Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21294 * 120.00504 * 2 1 4 4 N 1.34783 * 119.99647 * 179.97438 * 2 1 3 5 5 C 1.39866 * 119.99992 * 184.50733 * 4 2 1 6 6 C 1.35261 * 119.99877 * 184.16233 * 5 4 2 7 7 C 1.47124 * 119.99831 * 186.43910 * 6 5 4 8 8 C 1.39867 * 120.17256 * 211.72020 * 7 6 5 9 9 C 1.37886 * 119.82258 * 179.73882 * 8 7 6 10 10 C 1.38402 * 120.17447 * 0.51231 * 9 8 7 11 11 C 1.38404 * 120.34914 * 359.76232 * 10 9 8 12 12 C 1.37887 * 120.17965 * 359.97438 * 11 10 9 13 13 C 1.47026 * 120.00039 * 4.15909 * 5 4 2 14 14 O 1.21657 * 119.99994 * 69.80740 * 13 5 4 15 15 N 1.34779 * 119.99970 * 249.80651 * 13 5 4 16 16 C 1.46967 * 120.59171 * 184.73109 * 15 13 5 17 17 C 1.53374 * 108.63477 * 235.24744 * 16 15 13 18 18 N 1.46960 * 108.63099 * 310.57823 * 17 16 15 19 19 C 1.36939 * 120.59150 * 235.19980 * 18 17 16 20 20 H 1.07997 * 120.00037 * 148.50886 * 19 18 17 21 21 C 1.38812 * 119.99847 * 328.23515 * 19 18 17 22 22 N 1.31614 * 120.00330 * 349.57470 * 21 19 18 23 23 Si 1.86803 * 120.00002 * 169.57677 * 21 19 18 24 24 H 1.48500 * 109.46917 * 59.99768 * 23 21 19 25 25 H 1.48502 * 109.47145 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47150 * 299.99987 * 23 21 19 27 27 C 1.46958 * 118.81706 * 55.47784 * 18 17 16 28 28 C 1.46955 * 120.59542 * 4.75094 * 15 13 5 29 29 H 1.09000 * 109.47723 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47416 * 300.00532 * 1 2 3 31 31 H 1.09000 * 109.46955 * 59.99997 * 1 2 3 32 32 H 0.97000 * 119.99989 * 4.51689 * 4 2 1 33 33 H 1.07999 * 120.00085 * 6.43558 * 6 5 4 34 34 H 1.07999 * 120.08738 * 359.97438 * 8 7 6 35 35 H 1.07993 * 119.91163 * 180.25327 * 9 8 7 36 36 H 1.08003 * 119.82545 * 179.73943 * 10 9 8 37 37 H 1.08010 * 119.91023 * 179.97438 * 11 10 9 38 38 H 1.07995 * 120.09450 * 180.02562 * 12 11 10 39 39 H 1.08995 * 109.60978 * 115.50067 * 16 15 13 40 40 H 1.09003 * 109.75029 * 355.07236 * 16 15 13 41 41 H 1.08993 * 109.60852 * 190.82971 * 17 16 15 42 42 H 1.09004 * 109.74492 * 70.40262 * 17 16 15 43 43 H 0.97003 * 120.00348 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.60872 * 64.26280 * 27 18 17 45 45 H 1.09000 * 109.61241 * 184.77344 * 27 18 17 46 46 H 1.09004 * 109.61309 * 244.49778 * 28 15 13 47 47 H 1.09000 * 109.61102 * 4.84113 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5763 -1.1692 0.0957 6 6 4.2583 -2.3343 0.0116 7 6 5.7095 -2.3562 0.2525 8 6 6.5202 -3.2751 -0.4217 9 6 7.8802 -3.2857 -0.1945 10 6 8.4420 -2.3973 0.7058 11 6 7.6458 -1.4887 1.3812 12 6 6.2848 -1.4618 1.1610 13 6 4.3018 0.0952 0.2871 14 8 4.2196 0.6894 1.3455 15 7 5.0580 0.5958 -0.7099 16 6 5.8701 1.8025 -0.4991 17 6 5.4938 2.8389 -1.5652 18 7 5.5206 2.1882 -2.8827 19 6 6.2882 2.6974 -3.8959 20 1 6.7187 2.0352 -4.6325 21 6 6.5083 4.0654 -3.9796 22 7 5.8215 4.8904 -3.2181 23 14 7.7794 4.7356 -5.1732 24 1 7.4117 4.3460 -6.5582 25 1 7.8221 6.2165 -5.0709 26 1 9.1144 4.1772 -4.8398 27 6 4.7042 0.9848 -3.0951 28 6 5.0848 -0.0548 -2.0273 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6981 -2.0060 -0.0653 33 1 3.7375 -3.2484 -0.2323 34 1 6.0827 -3.9720 -1.1212 35 1 8.5080 -3.9919 -0.7173 36 1 9.5073 -2.4133 0.8826 37 1 8.0916 -0.7989 2.0825 38 1 5.6649 -0.7520 1.6884 39 1 6.9271 1.5523 -0.5891 40 1 5.6737 2.2100 0.4926 41 1 6.2115 3.6590 -1.5475 42 1 4.4934 3.2239 -1.3676 43 1 5.9750 5.8464 -3.2769 44 1 3.6481 1.2383 -3.0027 45 1 4.9004 0.5803 -4.0881 46 1 6.0860 -0.4372 -2.2262 47 1 4.3692 -0.8768 -2.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096443694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = 16.414025 kcal Electronic energy + Delta-G solvation = -31602.260291 eV Core-core repulsion = 27558.748233 eV Total energy + Delta-G solvation = -4043.512057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.84273 -39.23467 -38.45813 -36.63448 -35.72042 -33.78535 -32.89310 -31.07583 -30.82718 -30.53703 -30.07971 -28.18536 -26.85890 -24.35677 -23.23279 -22.75908 -22.42985 -21.84853 -20.61458 -19.95637 -18.59163 -17.39578 -17.17808 -16.57110 -16.30917 -15.85262 -15.35200 -15.21813 -14.98179 -14.72243 -14.35803 -14.24379 -13.83447 -13.55058 -13.44786 -13.31436 -13.19040 -13.10474 -12.82928 -12.71997 -12.67717 -12.48560 -12.11906 -11.70976 -11.37202 -11.17761 -11.05938 -10.84713 -10.77207 -10.60417 -10.51096 -10.11893 -9.96903 -9.90419 -9.77425 -9.42680 -9.33274 -8.84429 -8.49338 -8.07786 -7.70981 -6.55557 -5.75415 -3.26553 0.83191 1.51889 1.97895 2.58293 2.78601 3.36524 3.39572 3.44323 3.45177 3.60848 3.96313 4.47244 4.53843 4.73830 4.92186 4.94401 4.98990 5.04668 5.22254 5.23352 5.37343 5.41798 5.47422 5.48462 5.59158 5.76202 5.82132 5.86252 5.90952 6.02163 6.03161 6.16577 6.26799 6.37679 6.46884 6.49719 6.55604 6.62406 6.64903 6.70319 6.82652 7.00591 7.07659 7.16786 7.43739 7.72046 7.78509 8.00391 8.02539 8.47778 8.66819 9.22000 9.82796 10.42546 11.31054 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.004675 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.089205 B = 5987.782752 C = 7934.641516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.494 3.506 3 O -0.480 6.480 4 N -0.661 5.661 5 C 0.112 3.888 6 C -0.163 4.163 7 C -0.041 4.041 8 C -0.108 4.108 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.578 3.422 14 O -0.545 6.545 15 N -0.573 5.573 16 C 0.094 3.906 17 C 0.162 3.838 18 N -0.589 5.589 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.906 3.094 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.134 3.866 28 C 0.096 3.904 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.412 0.588 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.025 0.975 43 H 0.256 0.744 44 H 0.021 0.979 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -19.095 6.901 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.282 3.718 3 O -0.351 6.351 4 N -0.306 5.306 5 C 0.012 3.988 6 C -0.188 4.188 7 C -0.042 4.042 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.135 4.135 13 C 0.365 3.635 14 O -0.425 6.425 15 N -0.304 5.304 16 C -0.029 4.029 17 C 0.036 3.964 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.007 3.993 28 C -0.029 4.029 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.248 0.752 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.173 -17.685 7.436 19.870 hybrid contribution 0.256 -0.185 -0.807 0.866 sum -4.916 -17.870 6.629 19.684 Atomic orbital electron populations 1.21807 0.90239 1.04313 1.05960 1.21230 0.91269 0.83308 0.76012 1.90937 1.69375 1.30445 1.44336 1.43780 1.04227 1.10427 1.72165 1.20113 0.83817 0.95777 0.99090 1.21409 0.93015 0.95991 1.08407 1.18606 0.91741 0.96642 0.97197 1.21167 0.93547 0.98688 0.99263 1.20995 0.94917 0.99407 0.98652 1.21206 0.99618 0.96040 0.97045 1.21053 0.93660 0.98504 0.99815 1.21927 0.95886 0.97937 0.97752 1.17307 0.78708 0.82977 0.84525 1.90773 1.64763 1.59686 1.27295 1.47685 1.44305 1.27724 1.10717 1.22483 0.93189 0.85699 1.01578 1.21172 1.00499 0.92843 0.81898 1.43925 1.49985 1.28483 1.08768 1.19126 1.23513 0.89859 1.06073 0.91799 1.25204 0.99076 0.96333 0.98702 1.69959 1.40831 1.02379 1.41453 0.86330 0.81437 0.77755 0.80933 1.20893 1.21593 1.20923 1.21329 0.94143 0.88470 0.95372 1.22391 1.01119 0.95781 0.83657 0.90446 0.88232 0.88162 0.75154 0.84929 0.86043 0.86218 0.86374 0.86181 0.84670 0.92374 0.90310 0.88278 0.95652 0.93423 0.96149 0.91842 0.91765 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.39 36.01 0.37 -0.97 16 2 C 0.49 6.87 7.88 -10.98 -0.09 6.79 16 3 O -0.48 -9.78 14.00 -15.99 -0.22 -10.00 16 4 N -0.66 -7.67 5.40 -8.59 -0.05 -7.72 16 5 C 0.11 1.65 4.84 -81.69 -0.40 1.25 16 6 C -0.16 -1.99 8.76 -37.04 -0.32 -2.31 16 7 C -0.04 -0.55 5.06 -105.07 -0.53 -1.09 16 8 C -0.11 -1.26 9.80 -39.10 -0.38 -1.65 16 9 C -0.12 -1.38 10.03 -39.65 -0.40 -1.78 16 10 C -0.12 -1.46 10.04 -39.46 -0.40 -1.86 16 11 C -0.11 -1.55 10.03 -39.65 -0.40 -1.95 16 12 C -0.12 -1.79 8.15 -39.10 -0.32 -2.11 16 13 C 0.58 11.15 1.66 -12.70 -0.02 11.13 16 14 O -0.55 -12.31 14.15 -16.31 -0.23 -12.54 16 15 N -0.57 -11.46 2.66 -173.63 -0.46 -11.92 16 16 C 0.09 2.07 6.59 -3.59 -0.02 2.04 16 17 C 0.16 4.17 5.45 -3.60 -0.02 4.15 16 18 N -0.59 -15.19 2.95 -171.77 -0.51 -15.70 16 19 C -0.26 -7.06 9.57 -15.06 -0.14 -7.20 16 20 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 21 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 22 N -0.90 -26.67 11.03 55.49 0.61 -26.05 16 23 Si 0.91 21.78 29.57 -169.99 -5.03 16.76 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.13 2.92 6.70 -3.37 -0.02 2.90 16 28 C 0.10 1.76 5.87 -3.37 -0.02 1.74 16 29 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.41 2.75 8.54 -40.82 -0.35 2.40 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.14 2.41 4.90 -52.49 -0.26 2.15 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.77 7.00 -51.93 -0.36 1.40 16 41 H 0.10 2.76 6.03 -51.93 -0.31 2.45 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.07 1.04 5.86 -51.93 -0.30 0.74 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -36.81 380.45 -9.95 -46.76 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.61 Total: 5.50 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -3.20 Total: 9.17 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.40 Total: -61.39 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.45 Total: -22.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.81 -9.95 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096443694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.177 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds