Wall clock time and date at job start Tue Mar 31 2020 05:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 C 1.53001 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47203 * 299.99780 * 4 3 2 6 6 O 1.42903 * 109.46652 * 179.97438 * 5 4 3 7 7 C 1.42910 * 113.99564 * 150.00095 * 6 5 4 8 8 C 1.53120 * 109.51971 * 210.00006 * 7 6 5 9 9 C 1.53041 * 109.27509 * 182.37544 * 8 7 6 10 10 N 1.46847 * 109.52273 * 59.17878 * 9 8 7 11 11 C 1.46896 * 111.00074 * 174.15806 * 10 9 8 12 12 C 1.52997 * 109.47114 * 170.00310 * 11 10 9 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47089 * 179.97438 * 13 12 11 15 15 C 1.76198 * 99.99878 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00031 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00096 * 180.02562 * 15 14 13 18 18 N 1.31630 * 120.00158 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99736 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46768 * 90.00571 * 19 17 15 21 21 H 1.48501 * 109.47022 * 210.00163 * 19 17 15 22 22 H 1.48495 * 109.47092 * 330.00362 * 19 17 15 23 23 C 1.46842 * 111.19906 * 298.25858 * 10 9 8 24 24 C 1.53042 * 109.52712 * 61.74071 * 23 10 9 25 25 C 1.53004 * 109.47023 * 60.00308 * 5 4 3 26 26 C 1.52996 * 109.46900 * 299.99550 * 25 5 4 27 27 H 1.08999 * 109.47022 * 60.00885 * 1 2 3 28 28 H 1.09006 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47873 * 299.99982 * 1 2 3 30 30 H 1.08998 * 109.47513 * 239.99335 * 2 1 3 31 31 H 1.08996 * 109.47226 * 60.00062 * 3 2 1 32 32 H 1.08999 * 109.46560 * 299.99398 * 3 2 1 33 33 H 1.09005 * 109.46852 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46865 * 59.99776 * 4 3 2 35 35 H 1.08991 * 109.47131 * 300.00203 * 5 4 3 36 36 H 1.08999 * 109.52282 * 330.12468 * 7 6 5 37 37 H 1.09003 * 109.50235 * 62.44124 * 8 7 6 38 38 H 1.08997 * 109.53935 * 302.33464 * 8 7 6 39 39 H 1.08994 * 109.46241 * 299.16680 * 9 8 7 40 40 H 1.08997 * 109.45073 * 179.19215 * 9 8 7 41 41 H 1.08996 * 109.47194 * 50.00478 * 11 10 9 42 42 H 1.09001 * 109.47271 * 290.00041 * 11 10 9 43 43 H 1.09001 * 109.47502 * 60.00479 * 12 11 10 44 44 H 1.09001 * 109.47289 * 300.00275 * 12 11 10 45 45 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 46 46 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 47 47 H 0.96997 * 119.99587 * 179.97438 * 18 17 15 48 48 H 1.09008 * 109.46447 * 181.75710 * 23 10 9 49 49 H 1.08999 * 109.46532 * 301.72229 * 23 10 9 50 50 H 1.08989 * 109.50546 * 180.87969 * 24 23 10 51 51 H 1.09005 * 109.50013 * 60.75661 * 24 23 10 52 52 H 1.08996 * 109.46842 * 60.00163 * 25 5 4 53 53 H 1.08999 * 109.46560 * 180.02562 * 25 5 4 54 54 H 1.08998 * 109.47513 * 300.00665 * 26 25 5 55 55 H 1.09001 * 109.46781 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0794 0.7215 1.2502 6 8 5.5084 0.7211 1.2504 7 6 6.0894 0.7213 2.5561 8 6 7.4396 1.4425 2.5151 9 6 8.0838 1.3878 3.9023 10 7 8.2686 -0.0129 4.3026 11 6 9.0099 -0.1055 5.5675 12 6 8.9679 -1.5468 6.0789 13 6 9.7395 -1.6431 7.3966 14 16 9.6892 -3.3481 8.0020 15 6 10.6265 -3.1744 9.4839 16 1 11.0282 -2.2103 9.7589 17 6 10.8495 -4.2768 10.2973 18 7 11.5493 -4.1469 11.4046 19 14 10.1553 -5.9444 9.8213 20 1 11.1444 -6.6722 8.9862 21 1 9.8699 -6.7304 11.0485 22 1 8.8999 -5.7563 9.0508 23 6 6.9812 -0.7132 4.3947 24 6 6.3040 -0.7213 3.0223 25 6 3.5695 -0.7210 1.2502 26 6 2.0395 -0.7210 1.2497 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8901 33 1 3.9332 2.4703 0.0002 34 1 3.9336 0.9285 -0.8891 35 1 3.7157 1.2355 2.1399 36 1 5.4238 1.2335 3.2508 37 1 7.2881 2.4822 2.2250 38 1 8.0920 0.9540 1.7914 39 1 7.4376 1.8891 4.6228 40 1 9.0518 1.8880 3.8729 41 1 8.5540 0.5551 6.3049 42 1 10.0457 0.1921 5.4042 43 1 9.4239 -2.2075 5.3415 44 1 7.9321 -1.8445 6.2421 45 1 10.7754 -1.3454 7.2337 46 1 9.2832 -0.9826 8.1339 47 1 11.7048 -4.9172 11.9732 48 1 7.1484 -1.7391 4.7232 49 1 6.3402 -0.2020 5.1129 50 1 5.3415 -1.2274 3.0944 51 1 6.9383 -1.2444 2.3066 52 1 3.9332 -1.2349 0.3605 53 1 3.9321 -1.2345 2.1407 54 1 1.6758 -0.2070 2.1393 55 1 1.6762 -1.7487 1.2492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096444340.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:10 Heat of formation + Delta-G solvation = -103.486927 kcal Electronic energy + Delta-G solvation = -27627.944442 eV Core-core repulsion = 23981.361957 eV Total energy + Delta-G solvation = -3646.582485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.213 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.85982 -39.71159 -37.83565 -35.35231 -34.69098 -32.91404 -32.15624 -31.62401 -31.55350 -28.02472 -27.21607 -26.42973 -24.81150 -23.80317 -23.48197 -22.19432 -21.86247 -21.05032 -20.41922 -19.61656 -17.90118 -17.39420 -17.10367 -16.58287 -16.44397 -16.01498 -15.80861 -15.65296 -15.29903 -15.14828 -15.09211 -14.94632 -14.68758 -14.43490 -14.20623 -13.81904 -13.62392 -13.43329 -13.35527 -13.21949 -13.18792 -13.03446 -12.91748 -12.70186 -12.52601 -12.33958 -12.19510 -12.08098 -12.00002 -11.96777 -11.72861 -11.70736 -11.64653 -11.45862 -11.38189 -11.17271 -11.11673 -10.86653 -10.56777 -10.27304 -9.28573 -8.99690 -8.52591 -6.23939 1.11900 1.31752 1.47065 1.73646 2.24190 2.61643 2.67600 2.85452 2.90177 3.72816 3.74205 3.77185 3.81644 3.95364 3.98063 4.05728 4.09023 4.17668 4.21633 4.23111 4.30291 4.31925 4.38003 4.41977 4.47773 4.51317 4.56787 4.58102 4.61995 4.67942 4.74762 4.79217 4.79823 4.90232 4.94468 4.94827 4.97113 5.01098 5.04510 5.13865 5.14963 5.17499 5.22146 5.23554 5.25713 5.27396 5.36163 5.39391 5.45127 5.57284 5.68933 6.07134 6.09208 6.14804 6.39033 6.91469 8.60460 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.001766 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.693812 B =15849.480733 C =17122.248187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.089 3.911 6 O -0.389 6.389 7 C 0.093 3.907 8 C -0.107 4.107 9 C 0.059 3.941 10 N -0.546 5.546 11 C 0.069 3.931 12 C -0.091 4.091 13 C -0.069 4.069 14 S -0.220 6.220 15 C -0.524 4.524 16 H 0.050 0.950 17 C 0.038 3.962 18 N -0.922 5.922 19 Si 0.926 3.074 20 H -0.262 1.262 21 H -0.263 1.263 22 H -0.229 1.229 23 C 0.049 3.951 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.110 4.110 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.277 0.723 48 H 0.081 0.919 49 H 0.035 0.965 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.061 0.939 53 H 0.064 0.936 54 H 0.064 0.936 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.824 13.206 -25.944 36.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.145 4.145 4 C -0.151 4.151 5 C 0.031 3.969 6 O -0.309 6.309 7 C 0.035 3.965 8 C -0.145 4.145 9 C -0.069 4.069 10 N -0.271 5.271 11 C -0.060 4.060 12 C -0.130 4.130 13 C -0.218 4.218 14 S 0.008 5.992 15 C -0.671 4.671 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.560 5.560 19 Si 0.747 3.253 20 H -0.186 1.186 21 H -0.187 1.187 22 H -0.152 1.152 23 C -0.079 4.079 24 C -0.171 4.171 25 C -0.180 4.180 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.053 0.947 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.080 0.920 53 H 0.083 0.917 54 H 0.083 0.917 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.852 11.985 -26.743 36.556 hybrid contribution 0.459 0.698 1.976 2.146 sum -21.392 12.683 -24.767 35.098 Atomic orbital electron populations 1.21812 0.94460 1.01960 1.02107 1.21179 0.96036 0.95971 0.98126 1.21548 0.93502 0.96590 1.02822 1.21579 0.96116 1.00456 0.96986 1.22288 0.79969 0.95706 0.98903 1.87920 1.20205 1.94680 1.28067 1.22221 0.94840 0.95282 0.84114 1.21596 0.94871 1.01049 0.96960 1.22092 1.01090 0.88089 0.95606 1.62005 1.19498 1.14721 1.30865 1.22009 0.99354 0.95294 0.89362 1.21390 1.00275 0.97515 0.93822 1.23077 1.02921 0.95940 0.99908 1.83832 1.71703 1.15555 1.28095 1.22350 1.38074 0.98775 1.07913 0.93187 1.25785 0.94130 1.03003 0.93767 1.70039 1.39324 1.32998 1.13617 0.85710 0.81449 0.78763 0.79392 1.18631 1.18712 1.15219 1.22201 0.89252 0.99877 0.96560 1.22187 1.00799 0.97608 0.96464 1.22178 0.96536 0.96938 1.02397 1.21559 0.93950 1.00985 0.98306 0.92166 0.92587 0.92527 0.91466 0.91533 0.90576 0.91366 0.91843 0.92111 0.92079 0.89830 0.91272 0.94329 0.89368 0.94341 0.90045 0.90896 0.90861 0.91534 0.91670 0.91406 0.90100 0.94661 0.90445 0.91525 0.92019 0.91728 0.91707 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 71.98 0.66 -0.54 16 2 C -0.09 -0.94 2.72 -10.79 -0.03 -0.97 16 3 C -0.11 -1.02 5.20 30.60 0.16 -0.86 16 4 C -0.11 -1.43 5.57 30.59 0.17 -1.26 16 5 C 0.09 1.31 2.61 30.60 0.08 1.39 16 6 O -0.39 -7.37 9.67 -148.98 -1.44 -8.81 16 7 C 0.09 1.63 2.67 30.67 0.08 1.71 16 8 C -0.11 -1.82 5.75 30.65 0.18 -1.64 16 9 C 0.06 1.05 5.42 86.33 0.47 1.52 16 10 N -0.55 -11.95 4.81 -896.38 -4.31 -16.26 16 11 C 0.07 1.66 5.27 86.30 0.46 2.11 16 12 C -0.09 -2.67 4.47 30.60 0.14 -2.53 16 13 C -0.07 -2.64 5.67 71.98 0.41 -2.23 16 14 S -0.22 -10.63 19.41 -56.49 -1.10 -11.72 16 15 C -0.52 -31.14 10.04 67.95 0.68 -30.46 16 16 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 17 C 0.04 2.24 5.50 84.86 0.47 2.71 16 18 N -0.92 -57.03 13.97 21.65 0.30 -56.73 16 19 Si 0.93 44.35 27.74 68.60 1.90 46.25 16 20 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.23 -10.54 6.74 99.48 0.67 -9.87 16 23 C 0.05 1.02 4.85 86.33 0.42 1.44 16 24 C -0.13 -2.51 5.47 30.65 0.17 -2.34 16 25 C -0.14 -2.02 5.34 30.59 0.16 -1.85 16 26 C -0.11 -1.24 5.20 30.60 0.16 -1.08 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.85 7.37 -2.39 -0.02 0.83 16 36 H 0.06 0.99 7.37 -2.39 -0.02 0.98 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 41 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 2.10 6.21 -2.39 -0.01 2.08 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 47 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.08 1.84 5.81 -2.38 -0.01 1.82 16 49 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 50 H 0.08 1.33 5.61 -2.39 -0.01 1.32 16 51 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 52 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.06 0.96 5.55 -2.39 -0.01 0.95 16 54 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 55 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -65.57 420.80 0.96 -64.61 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.77 Total: 17.54 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.83 Total: -34.88 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -4.00 Total: -72.99 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -1.44 Total: -8.81 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -10.63 SS G_CDS: -1.10 Total: -11.72 kcal Total: -65.57 0.96 -64.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444340.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.879 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds