Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38261 * 120.00081 * 2 1 4 4 C 1.38215 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00123 * 359.80758 * 5 4 3 7 7 C 1.38220 * 120.00095 * 180.02562 * 2 1 3 8 8 C 1.50695 * 119.99827 * 359.97438 * 7 2 1 9 9 H 1.08998 * 115.56032 * 334.31009 * 8 7 2 10 10 C 1.53002 * 117.49798 * 188.62451 * 8 7 2 11 11 C 1.52999 * 117.49776 * 120.00202 * 8 7 2 12 12 H 1.09006 * 117.49696 * 214.97558 * 11 8 7 13 13 C 1.50699 * 117.50082 * 359.97438 * 11 8 7 14 14 O 1.21281 * 119.99739 * 0.02562 * 13 11 8 15 15 N 1.34778 * 119.99890 * 180.02562 * 13 11 8 16 16 C 1.46503 * 119.99822 * 180.02562 * 15 13 11 17 17 C 1.52990 * 109.47022 * 180.02562 * 16 15 13 18 18 C 1.53043 * 109.46295 * 295.02746 * 17 16 15 19 19 C 1.53182 * 109.31713 * 178.60337 * 18 17 16 20 20 N 1.46933 * 108.76600 * 54.65003 * 19 18 17 21 21 C 1.36945 * 120.62439 * 126.40809 * 20 19 18 22 22 H 1.07993 * 120.00377 * 331.80623 * 21 20 19 23 23 C 1.38807 * 119.99414 * 151.81519 * 21 20 19 24 24 N 1.31619 * 120.00478 * 343.07471 * 23 21 20 25 25 Si 1.86798 * 120.00074 * 163.07659 * 23 21 20 26 26 H 1.48502 * 109.47545 * 89.99446 * 25 23 21 27 27 H 1.48500 * 109.47623 * 209.99818 * 25 23 21 28 28 H 1.48506 * 109.47112 * 330.00142 * 25 23 21 29 29 C 1.46913 * 118.73917 * 306.38765 * 20 19 18 30 30 C 1.53040 * 109.46229 * 174.97057 * 17 16 15 31 31 H 1.08994 * 109.46913 * 269.97766 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.97914 * 1 2 3 33 33 H 1.09006 * 109.47063 * 149.98030 * 1 2 3 34 34 H 1.07993 * 119.99696 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.99972 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.99581 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.00187 * 180.23128 * 6 5 4 38 38 H 1.08993 * 117.49739 * 145.02038 * 10 8 7 39 39 H 1.08999 * 117.49915 * 359.97438 * 10 8 7 40 40 H 0.96994 * 120.00021 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.46994 * 300.00464 * 16 15 13 42 42 H 1.08996 * 109.46801 * 59.99870 * 16 15 13 43 43 H 1.09000 * 109.46405 * 54.99837 * 17 16 15 44 44 H 1.09004 * 109.49131 * 298.56861 * 18 17 16 45 45 H 1.08998 * 109.49759 * 58.65966 * 18 17 16 46 46 H 1.09000 * 109.60100 * 294.86665 * 19 18 17 47 47 H 1.08998 * 109.70988 * 174.50473 * 19 18 17 48 48 H 0.97001 * 120.00230 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.58904 * 293.81564 * 29 20 19 50 50 H 1.09011 * 109.58648 * 173.39369 * 29 20 19 51 51 H 1.09003 * 109.49818 * 301.33904 * 30 17 16 52 52 H 1.09006 * 109.49453 * 61.43509 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0040 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.4422 -2.4664 0.4261 10 6 2.2535 -3.7848 0.2024 11 6 1.6786 -3.4529 -1.1761 12 1 0.8301 -4.0428 -1.5229 13 6 2.6445 -3.0124 -2.2457 14 8 3.2028 -1.9397 -2.1541 15 7 2.8878 -3.8106 -3.3041 16 6 3.8273 -3.3827 -4.3437 17 6 3.9205 -4.4631 -5.4228 18 6 4.5302 -5.7320 -4.8227 19 6 4.5898 -6.8225 -5.8968 20 7 5.3142 -6.2984 -7.0628 21 6 6.3861 -6.9756 -7.5804 22 1 6.9892 -7.6023 -6.9402 23 6 6.6975 -6.8562 -8.9278 24 7 5.8044 -6.3815 -9.7701 25 14 8.3840 -7.3693 -9.5457 26 1 8.3540 -8.8022 -9.9345 27 1 8.7515 -6.5442 -10.7244 28 1 9.3874 -7.1695 -8.4693 29 6 4.8664 -5.0345 -7.6630 30 6 4.8034 -3.9641 -6.5690 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6583 2.1326 -0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3517 0.0001 0.0014 37 1 4.1206 -2.1322 0.0078 38 1 1.7832 -4.5930 0.7625 39 1 3.3307 -3.6848 0.3354 40 1 2.4410 -4.6684 -3.3776 41 1 3.4758 -2.4527 -4.7904 42 1 4.8109 -3.2243 -3.9015 43 1 2.9230 -4.6841 -5.8026 44 1 5.5374 -5.5177 -4.4652 45 1 3.9137 -6.0738 -3.9913 46 1 3.5781 -7.1020 -6.1907 47 1 5.1110 -7.6961 -5.5053 48 1 6.0219 -6.2985 -10.7118 49 1 3.8772 -5.1681 -8.1009 50 1 5.5715 -4.7266 -8.4353 51 1 4.3813 -3.0473 -6.9808 52 1 5.8080 -3.7666 -6.1949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096449617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = 29.447579 kcal Electronic energy + Delta-G solvation = -29758.486134 eV Core-core repulsion = 25916.798259 eV Total energy + Delta-G solvation = -3841.687875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.71007 -39.04754 -37.87126 -36.44871 -34.86668 -32.86733 -32.84397 -30.91412 -30.47430 -29.72334 -27.23292 -26.90286 -24.77586 -24.09427 -23.35003 -22.18377 -21.47917 -21.04090 -20.69822 -19.84559 -19.04865 -17.62668 -16.74237 -16.30077 -15.88894 -15.50586 -15.22827 -14.88119 -14.67586 -14.53056 -14.07195 -13.93699 -13.88373 -13.55384 -13.44962 -13.15243 -13.12558 -12.92600 -12.45352 -12.43772 -12.33351 -12.21976 -11.98028 -11.87595 -11.34581 -11.16704 -11.02693 -10.97443 -10.82312 -10.71359 -10.65626 -10.51620 -10.25093 -10.22788 -9.98312 -9.84812 -9.55540 -9.44595 -8.96146 -8.50432 -8.47468 -8.23678 -6.67182 -5.79635 -3.21968 1.34887 1.51668 2.51459 3.16846 3.36682 3.43957 3.46423 3.54533 3.94256 4.31557 4.49173 4.51440 4.61923 4.77047 4.83911 4.91262 4.98713 5.11744 5.12138 5.22534 5.23527 5.36124 5.37765 5.41144 5.43639 5.47159 5.57526 5.60300 5.60633 5.70137 5.84314 5.86578 5.95063 6.04523 6.09470 6.14748 6.15569 6.31560 6.43700 6.49813 6.54406 6.59591 6.60400 6.69031 6.69203 6.76026 6.80754 6.97086 7.09495 7.36294 7.56723 7.65110 7.78878 8.28937 8.44905 9.21038 9.84637 10.41321 11.28924 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.002064 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.439212 B =13562.046550 C =13954.534285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.047 4.047 7 C -0.046 4.046 8 C -0.083 4.083 9 H 0.120 0.880 10 C -0.149 4.149 11 C -0.182 4.182 12 H 0.125 0.875 13 C 0.531 3.469 14 O -0.522 6.522 15 N -0.721 5.721 16 C 0.126 3.874 17 C -0.090 4.090 18 C -0.126 4.126 19 C 0.145 3.855 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.064 0.936 23 C 0.002 3.998 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.172 3.828 30 C -0.133 4.133 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.399 0.601 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.050 0.950 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 9.942 21.785 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.066 4.066 7 C -0.046 4.046 8 C -0.101 4.101 9 H 0.138 0.862 10 C -0.186 4.186 11 C -0.203 4.203 12 H 0.143 0.857 13 C 0.317 3.683 14 O -0.398 6.398 15 N -0.373 5.373 16 C 0.003 3.997 17 C -0.109 4.109 18 C -0.165 4.165 19 C 0.019 3.981 20 N -0.315 5.315 21 C -0.382 4.382 22 H 0.082 0.918 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.046 3.954 30 C -0.172 4.172 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.233 0.767 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.106 0.894 51 H 0.069 0.931 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.913 10.729 21.629 26.496 hybrid contribution 0.623 -0.744 -0.717 1.207 sum -10.290 9.984 20.913 25.356 Atomic orbital electron populations 1.20786 0.91813 1.02631 1.01797 1.19535 0.95480 0.92536 1.00537 1.20822 0.94229 0.96963 1.03020 1.21003 0.94266 0.97747 1.00478 1.20939 0.99437 0.92569 1.02052 1.20677 0.93304 0.97538 0.95034 1.18621 0.93076 0.91903 1.01002 1.21073 1.00196 0.88961 0.99919 0.86166 1.23140 1.01002 0.98711 0.95730 1.22341 1.02182 1.05694 0.90064 0.85679 1.19658 0.82076 0.84463 0.82087 1.90793 1.50821 1.21760 1.76455 1.46102 1.46171 1.21987 1.23001 1.21538 0.92517 0.97799 0.87877 1.21303 1.00113 0.94491 0.94952 1.22060 1.00069 0.96319 0.98060 1.20888 0.95106 0.93948 0.88198 1.44050 1.33812 1.21463 1.32197 1.19162 1.02909 1.24917 0.91174 0.91801 1.25043 0.98085 1.00770 0.95792 1.70027 1.32323 1.50030 1.02389 0.86320 0.84375 0.77994 0.78222 1.21407 1.21541 1.20500 1.20761 0.98599 0.83461 0.92576 1.22176 0.98541 0.99456 0.97066 0.91538 0.91845 0.91587 0.86741 0.86772 0.86797 0.87117 0.87309 0.87849 0.76669 0.91962 0.91789 0.91397 0.92255 0.93496 0.96659 0.92913 0.93637 0.96473 0.89424 0.93123 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.33 36.00 0.34 -0.59 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 5 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 6 C -0.05 -0.59 6.19 -39.58 -0.24 -0.83 16 7 C -0.05 -0.53 4.35 -104.62 -0.46 -0.98 16 8 C -0.08 -0.74 5.15 -91.77 -0.47 -1.21 16 9 H 0.12 0.83 6.91 -51.93 -0.36 0.47 16 10 C -0.15 -1.14 9.58 -26.73 -0.26 -1.39 16 11 C -0.18 -1.62 6.19 -91.77 -0.57 -2.19 16 12 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 13 C 0.53 6.59 7.48 -10.99 -0.08 6.51 16 14 O -0.52 -8.13 11.73 5.56 0.07 -8.06 16 15 N -0.72 -8.54 5.27 -60.30 -0.32 -8.86 16 16 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 17 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 18 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 19 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 20 N -0.59 -14.62 2.99 -172.33 -0.52 -15.13 16 21 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 22 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 23 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 25 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.17 4.03 5.30 -3.72 -0.02 4.01 16 30 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.51 6.65 -51.93 -0.35 0.17 16 34 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.11 1.33 5.80 -52.49 -0.30 1.03 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.88 6.17 -51.93 -0.32 0.56 16 40 H 0.40 3.92 7.65 -40.82 -0.31 3.61 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.32 6.06 -51.92 -0.31 2.01 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -31.84 402.54 -12.05 -43.89 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.63 Total: 3.55 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.31 Total: -12.55 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.21 Total: -49.50 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.84 -12.05 -43.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.333 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds