Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00462 * 2 1 4 4 C 1.38216 * 120.00289 * 180.23534 * 3 2 1 5 5 C 1.38254 * 119.99778 * 359.52957 * 4 3 2 6 6 C 1.38215 * 120.00175 * 0.28339 * 5 4 3 7 7 C 1.38214 * 119.99775 * 179.83211 * 2 1 3 8 8 C 1.50700 * 120.00323 * 0.02562 * 7 2 1 9 9 H 1.09000 * 115.54609 * 25.60187 * 8 7 2 10 10 C 1.52999 * 117.49963 * 171.27649 * 8 7 2 11 11 C 1.52999 * 117.49633 * 239.93530 * 8 7 2 12 12 H 1.08993 * 117.49977 * 359.97438 * 11 8 7 13 13 C 1.50708 * 117.49589 * 144.99567 * 11 8 7 14 14 O 1.21281 * 119.99741 * 0.02562 * 13 11 8 15 15 N 1.34776 * 119.99647 * 179.97438 * 13 11 8 16 16 C 1.46501 * 119.99477 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.46761 * 179.97438 * 16 15 13 18 18 C 1.53039 * 109.46186 * 295.06352 * 17 16 15 19 19 C 1.53191 * 109.31462 * 178.61353 * 18 17 16 20 20 N 1.46934 * 108.77392 * 54.63614 * 19 18 17 21 21 C 1.36940 * 120.62744 * 126.36757 * 20 19 18 22 22 H 1.07998 * 119.99644 * 207.69974 * 21 20 19 23 23 C 1.38813 * 120.00063 * 27.70218 * 21 20 19 24 24 N 1.31621 * 120.00009 * 17.35233 * 23 21 20 25 25 Si 1.86796 * 120.00170 * 197.34718 * 23 21 20 26 26 H 1.48501 * 109.46993 * 60.00265 * 25 23 21 27 27 H 1.48500 * 109.47401 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47146 * 300.00296 * 25 23 21 29 29 C 1.46920 * 118.73822 * 306.39621 * 20 19 18 30 30 C 1.53052 * 109.45887 * 174.99849 * 17 16 15 31 31 H 1.08991 * 109.47049 * 270.16754 * 1 2 3 32 32 H 1.09004 * 109.46848 * 30.16930 * 1 2 3 33 33 H 1.08996 * 109.47219 * 150.16751 * 1 2 3 34 34 H 1.07997 * 119.99353 * 0.04318 * 3 2 1 35 35 H 1.08003 * 119.99853 * 179.80798 * 4 3 2 36 36 H 1.07999 * 119.99544 * 180.25757 * 5 4 3 37 37 H 1.08001 * 120.00046 * 179.97438 * 6 5 4 38 38 H 1.09007 * 117.49378 * 214.98063 * 10 8 7 39 39 H 1.08995 * 117.49845 * 359.97438 * 10 8 7 40 40 H 0.96999 * 120.00315 * 359.97438 * 15 13 11 41 41 H 1.09000 * 109.47400 * 299.99948 * 16 15 13 42 42 H 1.09002 * 109.47393 * 60.00054 * 16 15 13 43 43 H 1.08999 * 109.46351 * 55.02877 * 17 16 15 44 44 H 1.08994 * 109.50200 * 298.57189 * 18 17 16 45 45 H 1.08998 * 109.49400 * 58.66926 * 18 17 16 46 46 H 1.09003 * 109.58927 * 294.85897 * 19 18 17 47 47 H 1.08999 * 109.58956 * 174.42743 * 19 18 17 48 48 H 0.96992 * 120.00351 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.58673 * 293.81529 * 29 20 19 50 50 H 1.09001 * 109.58760 * 173.39350 * 29 20 19 51 51 H 1.09000 * 109.49344 * 301.33573 * 30 17 16 52 52 H 1.08998 * 109.49234 * 61.43200 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 0.0000 6 6 3.5806 -1.1970 0.0039 7 6 2.1980 -1.1970 0.0035 8 6 1.4445 -2.5021 0.0067 9 1 0.4416 -2.4669 -0.4187 10 6 2.2531 -3.7852 -0.1953 11 6 1.6797 -3.4506 1.1840 12 1 2.3797 -3.1309 1.9558 13 6 0.5069 -4.2649 1.6665 14 8 -0.5723 -4.1541 1.1243 15 7 0.6577 -5.1168 2.6999 16 6 -0.4822 -5.9087 3.1686 17 6 -0.0445 -6.7876 4.3420 18 6 0.9876 -7.8084 3.8573 19 6 1.4491 -8.6636 5.0415 20 7 0.2688 -9.2575 5.6843 21 6 0.1898 -10.6099 5.8845 22 1 -0.7745 -11.0946 5.9238 23 6 1.3493 -11.3578 6.0371 24 7 2.4843 -10.7597 6.3308 25 14 1.2986 -13.2131 5.8259 26 1 0.8373 -13.5426 4.4533 27 1 2.6575 -13.7729 6.0384 28 1 0.3608 -13.7987 6.8172 29 6 -0.8253 -8.3730 6.1074 30 6 -1.2613 -7.5209 4.9114 31 1 -0.3633 0.0030 1.0276 32 1 -0.3633 0.8885 -0.5165 33 1 -0.3633 -0.8914 -0.5112 34 1 1.6583 2.1326 0.0007 35 1 4.1205 2.1326 -0.0081 36 1 5.3517 0.0000 0.0004 37 1 4.1206 -2.1324 0.0073 38 1 1.7819 -4.5943 -0.7535 39 1 3.3299 -3.6853 -0.3310 40 1 1.5211 -5.2062 3.1328 41 1 -1.2802 -5.2406 3.4925 42 1 -0.8441 -6.5403 2.3572 43 1 0.3989 -6.1634 5.1177 44 1 0.5373 -8.4492 3.0992 45 1 1.8436 -7.2856 3.4307 46 1 1.9799 -8.0381 5.7592 47 1 2.1085 -9.4552 4.6855 48 1 3.2944 -11.2823 6.4378 49 1 -0.4799 -7.7237 6.9120 50 1 -1.6666 -8.9727 6.4548 51 1 -2.0058 -6.7935 5.2349 52 1 -1.6904 -8.1644 4.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096449618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = 17.327955 kcal Electronic energy + Delta-G solvation = -28982.539580 eV Core-core repulsion = 25140.326159 eV Total energy + Delta-G solvation = -3842.213421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.56507 -39.47812 -37.94021 -36.52719 -34.89740 -33.14392 -32.87949 -30.98497 -30.57930 -29.85952 -27.34213 -27.03336 -24.81444 -24.23004 -23.33194 -22.22037 -21.70964 -21.03693 -20.58329 -20.01556 -19.07961 -17.70842 -16.85942 -16.67206 -16.00535 -15.56201 -15.28301 -15.07020 -14.84240 -14.53355 -14.26176 -14.03525 -13.83780 -13.55601 -13.50785 -13.36559 -13.09211 -12.79230 -12.55407 -12.42466 -12.39314 -12.34894 -12.21374 -11.85570 -11.47085 -11.40236 -11.14023 -11.00157 -10.95023 -10.71760 -10.69528 -10.53532 -10.25665 -10.24311 -9.97232 -9.86636 -9.56260 -9.45356 -9.06447 -8.97662 -8.75301 -8.47230 -6.68191 -5.79894 -3.21529 0.99034 1.08685 2.45341 3.10147 3.37781 3.38185 3.43435 3.45064 3.78798 4.26748 4.43538 4.49197 4.55042 4.62279 4.63592 4.73359 4.86773 4.92693 5.01407 5.11354 5.24531 5.24783 5.35027 5.35550 5.37582 5.41911 5.45245 5.56605 5.57968 5.64847 5.77109 5.80114 5.86572 5.91485 5.92984 6.05395 6.14529 6.20581 6.21930 6.28223 6.39548 6.42354 6.52882 6.56812 6.66665 6.70913 6.75401 6.81101 6.97655 7.34995 7.53701 7.63334 7.78599 8.22248 8.44420 9.20812 9.84490 10.41007 11.28676 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.001853 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.136810 B =15104.455816 C =15766.958784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.054 4.054 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.145 4.145 11 C -0.176 4.176 12 H 0.124 0.876 13 C 0.540 3.460 14 O -0.546 6.546 15 N -0.718 5.718 16 C 0.124 3.876 17 C -0.090 4.090 18 C -0.135 4.135 19 C 0.171 3.829 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.146 3.854 30 C -0.125 4.125 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.403 0.597 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 22.795 -13.067 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.054 4.054 8 C -0.104 4.104 9 H 0.147 0.853 10 C -0.182 4.182 11 C -0.197 4.197 12 H 0.142 0.858 13 C 0.326 3.674 14 O -0.424 6.424 15 N -0.369 5.369 16 C 0.001 3.999 17 C -0.109 4.109 18 C -0.174 4.174 19 C 0.045 3.955 20 N -0.315 5.315 21 C -0.381 4.381 22 H 0.082 0.918 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 C 0.020 3.980 30 C -0.165 4.165 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.153 22.756 -13.387 26.427 hybrid contribution 0.618 -0.968 0.264 1.178 sum 1.771 21.788 -13.123 25.496 Atomic orbital electron populations 1.20872 0.91016 1.02951 1.02758 1.19757 0.96248 0.92341 0.99031 1.21031 0.94289 0.97385 1.01121 1.21140 0.94306 0.98089 1.00318 1.21105 0.99866 0.92421 1.00821 1.21076 0.93522 0.98415 1.00321 1.18983 0.93007 0.92735 1.00657 1.21110 1.00894 0.87908 1.00503 0.85299 1.23154 1.00417 0.98801 0.95815 1.22363 1.00328 1.03349 0.93685 0.85766 1.19567 0.88591 0.79473 0.79721 1.90681 1.27578 1.67016 1.57136 1.46004 1.14586 1.42120 1.34186 1.21568 0.87855 0.93321 0.97182 1.21310 0.97853 0.96156 0.95621 1.22252 0.96903 0.97455 1.00790 1.20774 0.89351 0.95293 0.90113 1.44048 1.17145 1.02939 1.67383 1.19152 0.92572 0.82495 1.43914 0.91754 1.25027 0.96572 0.98043 1.00086 1.70020 0.99548 1.34678 1.50595 0.86372 0.76642 0.85554 0.78232 1.21057 1.21656 1.20884 1.20883 0.91981 0.92387 0.92794 1.21988 0.95751 0.98543 1.00171 0.90920 0.91665 0.90835 0.86049 0.86153 0.86053 0.85762 0.87631 0.87374 0.76252 0.91972 0.91655 0.91330 0.92534 0.93580 0.96551 0.89475 0.93620 0.96526 0.92736 0.92957 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.60 36.00 0.35 -0.63 16 2 C -0.07 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 6 C -0.12 -0.96 9.30 -39.58 -0.37 -1.33 16 7 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 8 C -0.09 -0.84 5.02 -91.77 -0.46 -1.30 16 9 H 0.13 1.40 5.77 -51.93 -0.30 1.11 16 10 C -0.14 -1.25 9.57 -26.69 -0.26 -1.51 16 11 C -0.18 -1.76 5.82 -91.73 -0.53 -2.29 16 12 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 13 C 0.54 7.10 7.61 -10.98 -0.08 7.02 16 14 O -0.55 -9.03 16.26 5.56 0.09 -8.94 16 15 N -0.72 -8.97 5.27 -60.29 -0.32 -9.29 16 16 C 0.12 1.74 5.06 -4.04 -0.02 1.72 16 17 C -0.09 -1.40 2.19 -90.57 -0.20 -1.60 16 18 C -0.13 -2.40 5.25 -26.61 -0.14 -2.54 16 19 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 20 N -0.59 -14.56 3.00 -172.32 -0.52 -15.07 16 21 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 22 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 23 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 24 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 25 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.15 2.99 6.51 -3.72 -0.02 2.96 16 30 C -0.12 -2.08 5.36 -26.61 -0.14 -2.22 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.07 0.63 6.06 -51.93 -0.31 0.32 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.84 6.03 -52.49 -0.32 0.53 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.73 6.18 -51.93 -0.32 0.41 16 40 H 0.40 4.33 7.65 -40.82 -0.31 4.02 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -31.54 409.83 -12.04 -43.57 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.55 Total: 3.59 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -4.51 Total: -11.27 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.21 Total: -49.67 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.54 -12.04 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.903 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds