Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 119.99816 * 2 1 4 4 C 1.38214 * 119.99797 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00231 * 359.97168 * 4 3 2 6 6 C 1.38214 * 119.99676 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99717 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00504 * 359.97438 * 7 2 1 9 9 H 1.09003 * 115.54536 * 25.55786 * 8 7 2 10 10 C 1.52994 * 117.50287 * 171.23259 * 8 7 2 11 11 C 1.52995 * 117.49924 * 239.89618 * 8 7 2 12 12 H 1.09006 * 117.50128 * 145.01979 * 11 8 7 13 13 C 1.50703 * 117.50288 * 359.97438 * 11 8 7 14 14 O 1.21276 * 119.99537 * 0.02562 * 13 11 8 15 15 N 1.34779 * 120.00299 * 180.02562 * 13 11 8 16 16 C 1.46495 * 119.99967 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.47107 * 180.02562 * 16 15 13 18 18 C 1.53042 * 109.46030 * 295.06969 * 17 16 15 19 19 C 1.53196 * 109.30911 * 178.61251 * 18 17 16 20 20 N 1.46921 * 108.77694 * 54.63978 * 19 18 17 21 21 C 1.36927 * 120.63378 * 126.40869 * 20 19 18 22 22 H 1.08002 * 120.00261 * 332.60599 * 21 20 19 23 23 C 1.38814 * 120.00255 * 152.60152 * 21 20 19 24 24 N 1.31620 * 120.00273 * 159.36122 * 23 21 20 25 25 Si 1.86807 * 119.99837 * 339.36697 * 23 21 20 26 26 H 1.48504 * 109.46910 * 92.90823 * 25 23 21 27 27 H 1.48496 * 109.47106 * 212.90534 * 25 23 21 28 28 H 1.48497 * 109.47121 * 332.90849 * 25 23 21 29 29 C 1.46931 * 118.73505 * 306.38396 * 20 19 18 30 30 C 1.53042 * 109.45946 * 175.00228 * 17 16 15 31 31 H 1.09007 * 109.47053 * 269.98172 * 1 2 3 32 32 H 1.09005 * 109.47391 * 29.97647 * 1 2 3 33 33 H 1.08994 * 109.47645 * 149.98144 * 1 2 3 34 34 H 1.08003 * 120.00411 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99789 * 179.97438 * 4 3 2 36 36 H 1.07998 * 120.00169 * 180.30000 * 5 4 3 37 37 H 1.07997 * 120.00078 * 179.97438 * 6 5 4 38 38 H 1.08993 * 117.50224 * 214.98218 * 10 8 7 39 39 H 1.09006 * 117.49546 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99588 * 0.02562 * 15 13 11 41 41 H 1.08993 * 109.47475 * 300.00452 * 16 15 13 42 42 H 1.09008 * 109.46979 * 60.00215 * 16 15 13 43 43 H 1.09000 * 109.45800 * 55.03296 * 17 16 15 44 44 H 1.08994 * 109.50115 * 298.56701 * 18 17 16 45 45 H 1.08995 * 109.49448 * 58.66420 * 18 17 16 46 46 H 1.08998 * 109.58800 * 294.84961 * 19 18 17 47 47 H 1.09002 * 109.58136 * 174.42575 * 19 18 17 48 48 H 0.97001 * 119.99726 * 180.02562 * 24 23 21 49 49 H 1.08993 * 109.59036 * 293.82676 * 29 20 19 50 50 H 1.09001 * 109.58309 * 173.39460 * 29 20 19 51 51 H 1.08996 * 109.49659 * 301.33651 * 30 17 16 52 52 H 1.08999 * 109.49688 * 61.43777 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0004 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4410 -2.4655 -0.4244 10 6 2.2528 -3.7845 -0.2080 11 6 1.6813 -3.4545 1.1732 12 1 0.8336 -4.0449 1.5212 13 6 2.6506 -3.0160 2.2406 14 8 3.2086 -1.9431 2.1492 15 7 2.8972 -3.8161 3.2968 16 6 3.8398 -3.3900 4.3341 17 6 3.9374 -4.4729 5.4105 18 6 2.5880 -4.6105 6.1192 19 6 2.6796 -5.7192 7.1724 20 7 3.8054 -5.4271 8.0700 21 6 3.6223 -5.3791 9.4261 22 1 2.6570 -5.1145 9.8317 23 6 4.6774 -5.6708 10.2797 24 7 4.6514 -5.2492 11.5263 25 14 6.1345 -6.6615 9.6591 26 1 7.1902 -5.7374 9.1724 27 1 6.6752 -7.4923 10.7648 28 1 5.6964 -7.5423 8.5467 29 6 5.1318 -5.1878 7.4847 30 6 5.0127 -4.0849 6.4281 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5141 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1326 -0.0010 36 1 5.3517 0.0000 0.0040 37 1 4.1206 -2.1323 -0.0008 38 1 1.7809 -4.5917 -0.7681 39 1 3.3295 -3.6841 -0.3449 40 1 2.4511 -4.6743 3.3697 41 1 4.8221 -3.2308 3.8893 42 1 3.4897 -2.4607 4.7838 43 1 4.2024 -5.4231 4.9467 44 1 2.3340 -3.6680 6.6043 45 1 1.8184 -4.8639 5.3902 46 1 2.8437 -6.6779 6.6804 47 1 1.7539 -5.7547 7.7469 48 1 5.3888 -5.4527 12.1226 49 1 5.4958 -6.1031 7.0182 50 1 5.8241 -4.8726 8.2654 51 1 5.9688 -3.9643 5.9188 52 1 4.7359 -3.1474 6.9103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096449621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = 36.661227 kcal Electronic energy + Delta-G solvation = -29842.822654 eV Core-core repulsion = 26001.447586 eV Total energy + Delta-G solvation = -3841.375067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.76801 -39.13556 -38.12531 -36.53393 -35.02821 -32.90107 -32.88019 -31.17679 -30.56361 -30.33827 -27.43131 -26.94965 -24.76452 -24.13193 -23.42757 -22.58519 -21.51731 -21.25187 -20.77002 -19.94155 -19.30540 -17.68598 -16.78871 -16.37457 -16.06064 -15.61331 -15.33172 -15.12530 -14.80047 -14.55448 -14.20803 -14.10648 -13.94792 -13.82877 -13.46864 -13.29312 -13.17019 -13.00694 -12.86469 -12.51328 -12.36736 -12.22503 -12.10329 -12.03396 -11.78100 -11.42363 -11.19548 -11.00698 -10.87437 -10.84191 -10.69794 -10.64467 -10.51763 -10.15055 -9.98255 -9.87356 -9.67010 -9.43573 -9.04978 -8.63027 -8.53667 -8.27627 -6.98710 -5.95677 -3.31370 1.31746 1.48368 2.45158 3.08724 3.30842 3.47042 3.49650 3.50197 3.89729 4.26530 4.45160 4.51937 4.57341 4.73445 4.79997 4.86380 4.89811 4.92843 4.98609 5.08351 5.09876 5.16932 5.21518 5.30815 5.39701 5.41926 5.50510 5.53215 5.57318 5.68933 5.69457 5.76655 5.79574 5.87290 5.93989 6.04584 6.06229 6.12017 6.16030 6.27247 6.37642 6.44247 6.49293 6.51100 6.56869 6.61574 6.63830 6.65944 6.69117 6.95398 7.06167 7.47942 7.95741 8.21627 8.32196 8.93607 9.71472 10.09428 11.20395 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002164 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.061284 B =12934.477086 C =13191.697277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.133 4.133 6 C -0.046 4.046 7 C -0.048 4.048 8 C -0.083 4.083 9 H 0.122 0.878 10 C -0.150 4.150 11 C -0.181 4.181 12 H 0.126 0.874 13 C 0.532 3.468 14 O -0.520 6.520 15 N -0.722 5.722 16 C 0.126 3.874 17 C -0.091 4.091 18 C -0.128 4.128 19 C 0.148 3.852 20 N -0.606 5.606 21 C -0.260 4.260 22 H 0.085 0.915 23 C 0.022 3.978 24 N -0.909 5.909 25 Si 0.883 3.117 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.126 3.874 30 C -0.126 4.126 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.399 0.601 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.021 0.979 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.024 0.976 50 H 0.073 0.927 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 5.966 -28.045 29.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.151 4.151 6 C -0.064 4.064 7 C -0.048 4.048 8 C -0.101 4.101 9 H 0.140 0.860 10 C -0.187 4.187 11 C -0.202 4.202 12 H 0.144 0.856 13 C 0.318 3.682 14 O -0.397 6.397 15 N -0.374 5.374 16 C 0.003 3.997 17 C -0.110 4.110 18 C -0.168 4.168 19 C 0.022 3.978 20 N -0.330 5.330 21 C -0.388 4.388 22 H 0.102 0.898 23 C -0.177 4.177 24 N -0.552 5.552 25 Si 0.714 3.286 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.196 1.196 29 C 0.001 3.999 30 C -0.166 4.166 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.233 0.767 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.042 0.958 50 H 0.091 0.909 51 H 0.074 0.926 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.111 6.739 -27.893 29.339 hybrid contribution 0.732 -1.039 0.106 1.275 sum -5.380 5.700 -27.787 28.871 Atomic orbital electron populations 1.20807 0.91780 1.02249 1.02216 1.19535 0.95513 0.92535 1.00350 1.20828 0.94233 0.96996 1.02978 1.21009 0.94277 0.97758 1.00350 1.20931 0.99401 0.92579 1.02230 1.20656 0.93277 0.97483 0.95032 1.18607 0.93077 0.91928 1.01193 1.21102 1.00243 0.88920 0.99846 0.86033 1.23151 1.00988 0.98865 0.95713 1.22345 1.02127 1.05759 0.90015 0.85620 1.19665 0.82080 0.84428 0.82034 1.90797 1.50868 1.21689 1.76310 1.46078 1.46207 1.21994 1.23095 1.21498 0.92357 0.98200 0.87653 1.21299 0.97368 0.97578 0.94729 1.22071 0.95029 1.01479 0.98182 1.20913 0.91838 0.93827 0.91177 1.44351 1.03803 1.81732 1.03102 1.18922 0.99507 1.41039 0.79327 0.89760 1.25287 0.98094 0.99260 0.95023 1.69840 1.32813 1.46461 1.06047 0.86940 0.82986 0.81225 0.77438 1.21620 1.23185 1.19644 1.21327 0.88848 0.94747 0.95001 1.21992 0.96787 1.01034 0.96750 0.91341 0.91904 0.91629 0.86688 0.86750 0.86829 0.87179 0.87325 0.87905 0.76652 0.91903 0.91502 0.91246 0.91721 0.93028 0.96145 0.91926 0.92774 0.95808 0.90866 0.92628 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.60 36.01 0.35 -0.57 16 2 C -0.08 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.13 -1.44 9.70 -39.59 -0.38 -1.82 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 6 C -0.05 -0.55 6.16 -39.58 -0.24 -0.80 16 7 C -0.05 -0.53 4.37 -104.62 -0.46 -0.99 16 8 C -0.08 -0.70 5.51 -91.78 -0.51 -1.21 16 9 H 0.12 0.80 6.24 -51.93 -0.32 0.47 16 10 C -0.15 -1.05 9.58 -26.70 -0.26 -1.31 16 11 C -0.18 -1.52 6.19 -91.74 -0.57 -2.09 16 12 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 13 C 0.53 6.23 7.47 -10.98 -0.08 6.15 16 14 O -0.52 -7.78 11.69 5.56 0.07 -7.71 16 15 N -0.72 -7.88 5.27 -60.30 -0.32 -8.20 16 16 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 17 C -0.09 -1.29 2.19 -90.58 -0.20 -1.49 16 18 C -0.13 -1.94 5.25 -26.61 -0.14 -2.08 16 19 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 20 N -0.61 -14.14 2.77 -172.32 -0.48 -14.62 16 21 C -0.26 -7.22 10.03 -15.06 -0.15 -7.38 16 22 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 23 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 24 N -0.91 -27.91 13.97 55.49 0.78 -27.13 16 25 Si 0.88 22.33 24.35 -169.99 -4.14 18.19 16 26 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 27 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.27 -6.71 6.64 56.52 0.38 -6.34 16 29 C 0.13 2.70 4.20 -3.70 -0.02 2.68 16 30 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.06 0.43 6.06 -51.93 -0.31 0.12 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.11 1.25 5.77 -52.49 -0.30 0.94 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.80 6.18 -51.93 -0.32 0.48 16 40 H 0.40 3.52 7.65 -40.82 -0.31 3.20 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 50 H 0.07 1.74 4.50 -51.93 -0.23 1.50 16 51 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 52 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -33.15 395.42 -10.97 -44.12 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.49 Total: 2.76 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -4.34 Total: -13.37 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.02 Total: -49.95 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.71 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.15 -10.97 -44.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.782 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds