Wall clock time and date at job start Tue Mar 31 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 119.99816 * 2 1 4 4 C 1.38214 * 119.99797 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00231 * 359.97168 * 4 3 2 6 6 C 1.38214 * 119.99676 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99717 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00504 * 359.97438 * 7 2 1 9 9 H 1.09003 * 115.54536 * 25.55786 * 8 7 2 10 10 C 1.52994 * 117.50287 * 171.23259 * 8 7 2 11 11 C 1.52995 * 117.49924 * 239.89618 * 8 7 2 12 12 H 1.09006 * 117.50128 * 145.01979 * 11 8 7 13 13 C 1.50703 * 117.50288 * 359.97438 * 11 8 7 14 14 O 1.21276 * 119.99537 * 0.02562 * 13 11 8 15 15 N 1.34779 * 120.00299 * 180.02562 * 13 11 8 16 16 C 1.46495 * 119.99967 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.47107 * 180.02562 * 16 15 13 18 18 C 1.53042 * 109.46030 * 295.06969 * 17 16 15 19 19 C 1.53196 * 109.30911 * 178.61251 * 18 17 16 20 20 N 1.46921 * 108.77694 * 54.63978 * 19 18 17 21 21 C 1.36927 * 120.63378 * 126.40869 * 20 19 18 22 22 H 1.08002 * 120.00261 * 332.60599 * 21 20 19 23 23 C 1.38814 * 120.00255 * 152.60152 * 21 20 19 24 24 N 1.31620 * 120.00273 * 159.36122 * 23 21 20 25 25 Si 1.86807 * 119.99837 * 339.36697 * 23 21 20 26 26 H 1.48504 * 109.46910 * 92.90823 * 25 23 21 27 27 H 1.48496 * 109.47106 * 212.90534 * 25 23 21 28 28 H 1.48497 * 109.47121 * 332.90849 * 25 23 21 29 29 C 1.46931 * 118.73505 * 306.38396 * 20 19 18 30 30 C 1.53042 * 109.45946 * 175.00228 * 17 16 15 31 31 H 1.09007 * 109.47053 * 269.98172 * 1 2 3 32 32 H 1.09005 * 109.47391 * 29.97647 * 1 2 3 33 33 H 1.08994 * 109.47645 * 149.98144 * 1 2 3 34 34 H 1.08003 * 120.00411 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99789 * 179.97438 * 4 3 2 36 36 H 1.07998 * 120.00169 * 180.30000 * 5 4 3 37 37 H 1.07997 * 120.00078 * 179.97438 * 6 5 4 38 38 H 1.08993 * 117.50224 * 214.98218 * 10 8 7 39 39 H 1.09006 * 117.49546 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99588 * 0.02562 * 15 13 11 41 41 H 1.08993 * 109.47475 * 300.00452 * 16 15 13 42 42 H 1.09008 * 109.46979 * 60.00215 * 16 15 13 43 43 H 1.09000 * 109.45800 * 55.03296 * 17 16 15 44 44 H 1.08994 * 109.50115 * 298.56701 * 18 17 16 45 45 H 1.08995 * 109.49448 * 58.66420 * 18 17 16 46 46 H 1.08998 * 109.58800 * 294.84961 * 19 18 17 47 47 H 1.09002 * 109.58136 * 174.42575 * 19 18 17 48 48 H 0.97001 * 119.99726 * 180.02562 * 24 23 21 49 49 H 1.08993 * 109.59036 * 293.82676 * 29 20 19 50 50 H 1.09001 * 109.58309 * 173.39460 * 29 20 19 51 51 H 1.08996 * 109.49659 * 301.33651 * 30 17 16 52 52 H 1.08999 * 109.49688 * 61.43777 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0004 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4410 -2.4655 -0.4244 10 6 2.2528 -3.7845 -0.2080 11 6 1.6813 -3.4545 1.1732 12 1 0.8336 -4.0449 1.5212 13 6 2.6506 -3.0160 2.2406 14 8 3.2086 -1.9431 2.1492 15 7 2.8972 -3.8161 3.2968 16 6 3.8398 -3.3900 4.3341 17 6 3.9374 -4.4729 5.4105 18 6 2.5880 -4.6105 6.1192 19 6 2.6796 -5.7192 7.1724 20 7 3.8054 -5.4271 8.0700 21 6 3.6223 -5.3791 9.4261 22 1 2.6570 -5.1145 9.8317 23 6 4.6774 -5.6708 10.2797 24 7 4.6514 -5.2492 11.5263 25 14 6.1345 -6.6615 9.6591 26 1 7.1902 -5.7374 9.1724 27 1 6.6752 -7.4923 10.7648 28 1 5.6964 -7.5423 8.5467 29 6 5.1318 -5.1878 7.4847 30 6 5.0127 -4.0849 6.4281 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5141 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1326 -0.0010 36 1 5.3517 0.0000 0.0040 37 1 4.1206 -2.1323 -0.0008 38 1 1.7809 -4.5917 -0.7681 39 1 3.3295 -3.6841 -0.3449 40 1 2.4511 -4.6743 3.3697 41 1 4.8221 -3.2308 3.8893 42 1 3.4897 -2.4607 4.7838 43 1 4.2024 -5.4231 4.9467 44 1 2.3340 -3.6680 6.6043 45 1 1.8184 -4.8639 5.3902 46 1 2.8437 -6.6779 6.6804 47 1 1.7539 -5.7547 7.7469 48 1 5.3888 -5.4527 12.1226 49 1 5.4958 -6.1031 7.0182 50 1 5.8241 -4.8726 8.2654 51 1 5.9688 -3.9643 5.9188 52 1 4.7359 -3.1474 6.9103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096449621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:11 Heat of formation + Delta-G solvation = 17.378418 kcal Electronic energy + Delta-G solvation = -29843.658819 eV Core-core repulsion = 26001.447586 eV Total energy + Delta-G solvation = -3842.211233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.55141 -40.12929 -39.38679 -37.32615 -36.30286 -34.49632 -33.61831 -32.89700 -31.89363 -31.34583 -28.79433 -27.66029 -26.12449 -24.93157 -24.70119 -23.94471 -22.70434 -22.25968 -21.54396 -21.02118 -20.48227 -18.82034 -18.37417 -17.36463 -17.14374 -16.72492 -16.40276 -16.24501 -15.91222 -15.62336 -15.43147 -15.26561 -15.01157 -14.99348 -14.71346 -14.48686 -14.43858 -14.03688 -13.89614 -13.73632 -13.62224 -13.40346 -13.09773 -12.94976 -12.88024 -12.75132 -12.55184 -12.25633 -12.13046 -11.89864 -11.73913 -11.70717 -11.59835 -11.57287 -11.30751 -11.28521 -11.20717 -10.79973 -10.65672 -10.00191 -9.34767 -9.07430 -8.92615 -8.17149 -5.48343 0.53096 0.66385 1.29652 1.40308 1.49857 1.63739 2.23887 2.41359 2.80061 3.05302 3.18715 3.37047 3.61077 3.78725 3.83691 3.86747 3.93343 3.98794 4.05618 4.10275 4.17886 4.22565 4.37034 4.40914 4.43526 4.49225 4.53847 4.63081 4.71462 4.74009 4.76205 4.82122 4.87933 4.88190 4.90755 4.96654 5.00252 5.05563 5.10733 5.16103 5.18821 5.20519 5.26593 5.30923 5.39763 5.48220 5.61317 5.71526 5.75602 5.86993 5.87691 6.12342 6.28812 6.66463 6.92933 7.38135 7.63597 8.03550 9.02987 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002164 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.061284 B =12934.477086 C =13191.697277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.131 4.131 5 C -0.155 4.155 6 C -0.060 4.060 7 C -0.058 4.058 8 C -0.094 4.094 9 H 0.144 0.856 10 C -0.134 4.134 11 C -0.181 4.181 12 H 0.155 0.845 13 C 0.525 3.475 14 O -0.558 6.558 15 N -0.714 5.714 16 C 0.140 3.860 17 C -0.078 4.078 18 C -0.117 4.117 19 C 0.142 3.858 20 N -0.622 5.622 21 C -0.248 4.248 22 H 0.049 0.951 23 C -0.040 4.040 24 N -0.960 5.960 25 Si 0.950 3.050 26 H -0.276 1.276 27 H -0.313 1.313 28 H -0.257 1.257 29 C 0.120 3.880 30 C -0.121 4.121 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.261 0.739 49 H 0.038 0.962 50 H 0.045 0.955 51 H 0.080 0.920 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 4.424 -31.527 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.149 4.149 5 C -0.173 4.173 6 C -0.079 4.079 7 C -0.058 4.058 8 C -0.112 4.112 9 H 0.162 0.838 10 C -0.171 4.171 11 C -0.202 4.202 12 H 0.173 0.827 13 C 0.313 3.687 14 O -0.436 6.436 15 N -0.366 5.366 16 C 0.016 3.984 17 C -0.097 4.097 18 C -0.156 4.156 19 C 0.017 3.983 20 N -0.347 5.347 21 C -0.378 4.378 22 H 0.067 0.933 23 C -0.234 4.234 24 N -0.606 5.606 25 Si 0.779 3.221 26 H -0.203 1.203 27 H -0.242 1.242 28 H -0.181 1.181 29 C -0.005 4.005 30 C -0.160 4.160 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.109 0.891 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.098 0.902 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.006 5.174 -31.436 32.620 hybrid contribution 0.931 -0.486 1.177 1.577 sum -6.074 4.687 -30.260 31.217 Atomic orbital electron populations 1.20832 0.89833 1.03720 1.02342 1.19959 0.97149 0.92488 0.99925 1.21154 0.94383 0.98026 1.02875 1.21260 0.94836 0.98206 1.00620 1.21160 0.99939 0.93176 1.03051 1.20785 0.94079 0.97366 0.95621 1.18949 0.92999 0.93470 1.00397 1.21250 1.01312 0.88144 1.00468 0.83802 1.23260 1.00491 0.98739 0.94592 1.22392 1.02252 1.06223 0.89299 0.82700 1.20306 0.82079 0.83860 0.82485 1.90800 1.52343 1.23380 1.77125 1.45942 1.45748 1.22544 1.22379 1.21147 0.92792 0.96791 0.87683 1.21165 0.95657 0.98779 0.94105 1.21941 0.96858 0.98945 0.97824 1.21139 0.89807 0.96082 0.91257 1.44510 1.05887 1.82328 1.01983 1.18870 0.97922 1.39129 0.81846 0.93350 1.25955 1.01488 1.00743 0.95230 1.69982 1.34248 1.48680 1.07724 0.85856 0.79860 0.79584 0.76806 1.20282 1.24167 1.18090 1.21390 0.87238 0.96583 0.95250 1.21886 0.99278 0.98477 0.96399 0.91709 0.90811 0.89880 0.85178 0.85418 0.86419 0.87337 0.84241 0.89062 0.75017 0.92116 0.93572 0.89179 0.93894 0.89099 0.93999 0.93014 0.93030 0.94395 0.93674 0.90171 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.60 71.24 0.68 -0.87 16 2 C -0.10 -1.96 5.88 -19.87 -0.12 -2.07 16 3 C -0.15 -3.12 9.70 22.27 0.22 -2.90 16 4 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 5 C -0.16 -3.72 10.05 22.27 0.22 -3.50 16 6 C -0.06 -1.42 6.16 22.27 0.14 -1.29 16 7 C -0.06 -1.22 4.37 -19.87 -0.09 -1.30 16 8 C -0.09 -1.30 5.51 -11.54 -0.06 -1.36 16 9 H 0.14 1.31 6.24 -2.39 -0.01 1.29 16 10 C -0.13 -1.39 9.58 30.62 0.29 -1.10 16 11 C -0.18 -2.37 6.19 -11.52 -0.07 -2.44 16 12 H 0.16 1.13 8.14 -2.38 -0.02 1.11 16 13 C 0.53 11.02 7.47 87.66 0.65 11.67 16 14 O -0.56 -16.16 11.69 -3.02 -0.04 -16.19 16 15 N -0.71 -13.26 5.27 -463.07 -2.44 -15.71 16 16 C 0.14 3.31 5.06 86.38 0.44 3.75 16 17 C -0.08 -1.98 2.19 -10.77 -0.02 -2.00 16 18 C -0.12 -3.22 5.25 30.67 0.16 -3.06 16 19 C 0.14 5.05 6.52 86.36 0.56 5.61 16 20 N -0.62 -28.63 2.77 -699.09 -1.94 -30.57 16 21 C -0.25 -14.13 10.03 84.04 0.84 -13.29 16 22 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 23 C -0.04 -2.35 5.23 84.86 0.44 -1.90 16 24 N -0.96 -61.16 13.97 21.65 0.30 -60.86 16 25 Si 0.95 46.62 24.35 68.60 1.67 48.29 16 26 H -0.28 -12.84 6.62 99.48 0.66 -12.18 16 27 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 28 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 29 C 0.12 4.93 4.20 86.36 0.36 5.29 16 30 C -0.12 -3.89 5.36 30.67 0.16 -3.72 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16 33 H 0.08 0.84 6.06 -2.39 -0.01 0.82 16 34 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.11 2.45 5.77 -2.91 -0.02 2.44 16 38 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 1.20 6.18 -2.38 -0.01 1.18 16 40 H 0.41 5.37 7.65 -92.71 -0.71 4.66 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.82 7.15 -2.39 -0.02 1.80 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 48 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 49 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 50 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 51 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.76 395.42 2.72 -73.04 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.11 Total: 19.20 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 5.05 Total: -17.20 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.07 Total: -107.13 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.04 Total: -16.19 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.67 Total: 48.29 kcal Total: -75.76 2.72 -73.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.416 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds