Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47216 * 240.00515 * 3 2 1 5 5 H 1.48499 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46929 * 120.00127 * 3 2 1 7 7 C 1.38810 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00498 * 185.81207 * 7 2 1 9 9 N 1.36936 * 119.99718 * 5.80475 * 7 2 1 10 10 C 1.46966 * 120.59387 * 214.65264 * 9 7 2 11 11 C 1.53372 * 108.63484 * 235.20684 * 10 9 7 12 12 N 1.46970 * 108.63357 * 310.57552 * 11 10 9 13 13 C 1.34779 * 120.59215 * 235.20248 * 12 11 10 14 14 O 1.21770 * 120.00328 * 354.33168 * 13 12 11 15 15 C 1.46142 * 119.99888 * 174.32788 * 13 12 11 16 16 C 1.37837 * 126.03129 * 186.27948 * 15 13 12 17 17 C 1.39891 * 106.68208 * 180.02562 * 16 15 13 18 18 C 1.36107 * 107.17949 * 359.97438 * 17 16 15 19 19 O 1.35363 * 125.58231 * 179.97438 * 18 17 16 20 20 C 1.35882 * 118.00072 * 255.17918 * 19 18 17 21 21 C 1.38762 * 120.05805 * 174.99597 * 20 19 18 22 22 C 1.38139 * 119.93959 * 180.02562 * 21 20 19 23 23 C 1.38271 * 120.06010 * 0.03033 * 22 21 20 24 24 C 1.38272 * 120.11679 * 0.24857 * 23 22 21 25 25 C 1.38140 * 120.05717 * 359.45068 * 24 23 22 26 26 O 1.34036 * 108.83700 * 0.24491 * 18 17 16 27 27 C 1.46966 * 118.81208 * 55.47877 * 12 11 10 28 28 C 1.46961 * 120.59406 * 34.63169 * 9 7 2 29 29 H 0.97006 * 119.99692 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.61182 * 115.46280 * 10 9 7 31 31 H 1.09001 * 109.61063 * 354.94867 * 10 9 7 32 32 H 1.09004 * 109.61254 * 190.83659 * 11 10 9 33 33 H 1.08997 * 109.61196 * 70.31687 * 11 10 9 34 34 H 1.07995 * 126.65569 * 0.02660 * 16 15 13 35 35 H 1.08005 * 126.40858 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.02908 * 0.02562 * 21 20 19 37 37 H 1.08001 * 119.96320 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.94035 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.97413 * 179.72574 * 24 23 22 40 40 H 1.08003 * 120.03008 * 180.25862 * 25 24 23 41 41 H 1.08991 * 109.60823 * 64.26679 * 27 12 11 42 42 H 1.09000 * 109.60719 * 184.77969 * 27 12 11 43 43 H 1.09001 * 109.61170 * 244.53901 * 28 9 7 44 44 H 1.08999 * 109.61126 * 5.04897 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0860 -1.2046 0.0942 9 7 1.3308 -2.3849 -0.1210 10 6 1.7956 -3.5894 0.5812 11 6 1.9897 -4.7114 -0.4462 12 7 0.7824 -4.7990 -1.2797 13 6 0.1137 -5.9632 -1.3983 14 8 0.5639 -6.9777 -0.8975 15 6 -1.1517 -6.0080 -2.1280 16 6 -1.9950 -7.0942 -2.2229 17 6 -3.0789 -6.6935 -3.0112 18 6 -2.8621 -5.3967 -3.3635 19 8 -3.6834 -4.6407 -4.1291 20 6 -3.3149 -4.3999 -5.4146 21 6 -4.1720 -3.7189 -6.2674 22 6 -3.7951 -3.4759 -7.5740 23 6 -2.5654 -3.9111 -8.0324 24 6 -1.7119 -4.5950 -7.1864 25 6 -2.0812 -4.8352 -5.8771 26 8 -1.6993 -4.9928 -2.8332 27 6 0.3207 -3.5959 -1.9864 28 6 0.1235 -2.4725 -0.9544 29 1 -0.4850 0.8401 0.0004 30 1 1.0522 -3.8929 1.3183 31 1 2.7430 -3.3805 1.0781 32 1 2.1465 -5.6580 0.0710 33 1 2.8521 -4.4875 -1.0741 34 1 -1.8475 -8.0659 -1.7754 35 1 -3.9290 -7.2994 -3.2879 36 1 -5.1328 -3.3792 -5.9099 37 1 -4.4617 -2.9456 -8.2379 38 1 -2.2728 -3.7205 -9.0544 39 1 -0.7537 -4.9378 -7.5482 40 1 -1.4124 -5.3657 -5.2155 41 1 1.0671 -3.2944 -2.7212 42 1 -0.6248 -3.8056 -2.4864 43 1 -0.7389 -2.6964 -0.3267 44 1 -0.0334 -1.5259 -1.4717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096451326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = 31.748262 kcal Electronic energy + Delta-G solvation = -29872.020470 eV Core-core repulsion = 25758.766171 eV Total energy + Delta-G solvation = -4113.254299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.98327 -40.47033 -39.38874 -37.91128 -36.90877 -34.07627 -33.23573 -31.58142 -31.30114 -30.61046 -30.25745 -28.99992 -26.95324 -24.50461 -23.51376 -23.12331 -22.88657 -22.07926 -21.68397 -20.59686 -19.56222 -19.03451 -17.66227 -17.35087 -16.44988 -16.24818 -15.96293 -15.82766 -15.52387 -14.82091 -14.73967 -14.58584 -14.10396 -13.87503 -13.84417 -13.69689 -13.49281 -13.40140 -13.32408 -13.10084 -12.91385 -12.48099 -12.09991 -11.90629 -11.57790 -11.32620 -11.11276 -10.88181 -10.74707 -10.57833 -10.28325 -10.22745 -10.13733 -9.97842 -9.74251 -9.29090 -8.82766 -8.62798 -8.53884 -8.29580 -6.66283 -5.88053 -3.42407 0.75727 1.05276 1.09556 1.79762 2.17677 3.11687 3.29794 3.33047 3.38184 3.38580 3.44641 3.56751 4.40585 4.50694 4.59063 4.62197 4.69929 4.86371 4.98179 5.08634 5.18813 5.27974 5.31357 5.45527 5.52576 5.61779 5.70460 5.78051 5.83861 5.89169 5.95914 6.07709 6.08435 6.12185 6.17576 6.23764 6.36705 6.39552 6.52222 6.66071 6.75535 6.85748 7.17591 7.19270 7.46962 7.67381 7.73015 8.25857 8.37905 9.10419 9.69420 10.29423 11.19029 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003679 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.228806 B = 7608.698323 C = 9569.322526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.010 3.990 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.581 5.581 13 C 0.591 3.409 14 O -0.537 6.537 15 C -0.043 4.043 16 C -0.118 4.118 17 C -0.189 4.189 18 C 0.156 3.844 19 O -0.203 6.203 20 C 0.105 3.895 21 C -0.135 4.135 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.082 4.082 25 C -0.182 4.182 26 O -0.157 6.157 27 C 0.062 3.938 28 C 0.162 3.838 29 H 0.257 0.743 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.024 0.976 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -11.066 -13.892 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.311 5.311 13 C 0.378 3.622 14 O -0.418 6.418 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.208 4.208 18 C 0.063 3.937 19 O -0.114 6.114 20 C 0.063 3.937 21 C -0.154 4.154 22 C -0.103 4.103 23 C -0.165 4.165 24 C -0.100 4.100 25 C -0.200 4.200 26 O -0.056 6.056 27 C -0.060 4.060 28 C 0.036 3.964 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.186 0.814 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.042 0.958 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.168 -11.014 -13.559 18.882 hybrid contribution 0.318 1.005 0.007 1.054 sum -6.851 -10.009 -13.551 18.186 Atomic orbital electron populations 1.69905 1.05383 1.25929 1.53474 1.25296 0.95477 0.98567 0.99583 0.86305 0.78850 0.82941 0.78225 1.20822 1.21496 1.20702 1.19131 0.90238 0.83225 1.46467 0.91680 1.43932 1.29794 1.06050 1.51595 1.21340 0.98798 0.87186 0.92314 1.22369 0.85432 1.01048 0.93963 1.48056 1.27260 1.09383 1.46432 1.16626 0.81454 0.84074 0.80062 1.90849 1.67200 1.33567 1.50146 1.22538 0.97484 0.86348 1.03176 1.21980 0.92530 0.99532 0.99779 1.21463 1.02309 0.91883 1.05174 1.20318 0.86255 0.89590 0.97509 1.84594 1.38960 1.67766 1.20102 1.19334 0.94430 0.97566 0.82366 1.20440 1.00310 1.01670 0.92969 1.20993 0.96519 0.98381 0.94428 1.21164 0.94721 1.00328 1.00291 1.21003 0.99524 0.96887 0.92558 1.21368 0.96055 1.04641 0.97952 1.84465 1.30280 1.38189 1.52676 1.23444 0.99621 0.86185 0.96791 1.21264 0.88531 0.95948 0.90702 0.93266 0.95696 0.91166 0.89656 0.91444 0.81360 0.81809 0.84643 0.84902 0.85545 0.85356 0.85407 0.91456 0.88659 0.95763 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 10.99 55.49 0.61 -24.99 16 2 C 0.01 0.27 5.14 -17.43 -0.09 0.18 16 3 Si 0.91 21.13 29.56 -169.99 -5.02 16.11 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.95 9.56 -15.06 -0.14 -7.10 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.59 -14.56 2.95 -171.77 -0.51 -15.07 16 10 C 0.13 2.73 6.67 -3.60 -0.02 2.71 16 11 C 0.10 1.75 6.58 -3.59 -0.02 1.73 16 12 N -0.58 -10.98 2.94 -173.94 -0.51 -11.49 16 13 C 0.59 10.79 7.64 -13.09 -0.10 10.69 16 14 O -0.54 -10.57 16.31 5.13 0.08 -10.48 16 15 C -0.04 -0.70 6.89 -36.56 -0.25 -0.95 16 16 C -0.12 -1.55 10.67 -39.11 -0.42 -1.97 16 17 C -0.19 -2.26 10.89 -39.73 -0.43 -2.70 16 18 C 0.16 2.21 5.96 29.97 0.18 2.38 16 19 O -0.20 -2.82 10.11 -25.15 -0.25 -3.07 16 20 C 0.10 1.32 6.66 -39.19 -0.26 1.06 16 21 C -0.14 -1.41 9.99 -39.42 -0.39 -1.81 16 22 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 23 C -0.15 -1.29 10.04 -39.56 -0.40 -1.69 16 24 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 25 C -0.18 -2.20 9.18 -39.42 -0.36 -2.56 16 26 O -0.16 -2.50 6.49 -19.31 -0.13 -2.62 16 27 C 0.06 1.21 6.53 -3.36 -0.02 1.19 16 28 C 0.16 3.83 5.45 -3.37 -0.02 3.81 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 32 H 0.09 1.48 7.02 -51.93 -0.36 1.12 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.63 6.42 -52.48 -0.34 1.29 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 1.76 3.69 -55.66 -0.21 1.56 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 2.67 6.11 -51.93 -0.32 2.35 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -30.96 366.83 -9.17 -40.13 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.41 Total: 3.35 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.55 Total: 2.62 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.41 Total: -51.55 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.30 Total: -16.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.96 -9.17 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096451326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.875 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds