Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47036 * 2 1 4 4 C 1.46503 * 119.99672 * 270.00313 * 3 2 1 5 5 C 1.50704 * 109.47158 * 269.99739 * 4 3 2 6 6 H 1.08006 * 119.99792 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00314 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00452 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00036 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47423 * 89.99703 * 9 7 5 11 11 H 1.48498 * 109.47168 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46885 * 329.99657 * 9 7 5 13 13 C 1.34774 * 120.00363 * 90.00142 * 3 2 1 14 14 O 1.21591 * 120.00280 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99664 * 0.02562 * 13 3 2 16 16 C 1.39952 * 119.99870 * 184.58764 * 15 13 3 17 17 C 1.38868 * 120.06985 * 324.65523 * 16 15 13 18 18 C 1.38116 * 119.92574 * 179.69620 * 17 16 15 19 19 C 1.38281 * 120.06848 * 0.60134 * 18 17 16 20 20 C 1.50700 * 119.92444 * 179.69683 * 19 18 17 21 21 N 1.46506 * 109.47313 * 275.02283 * 20 19 18 22 22 C 1.36883 * 126.39453 * 94.92301 * 21 20 19 23 23 C 1.34668 * 106.81519 * 180.02562 * 22 21 20 24 24 N 1.34129 * 108.02119 * 359.97438 * 23 22 21 25 25 C 1.30501 * 109.25680 * 359.72923 * 24 23 22 26 26 C 1.50701 * 125.65109 * 180.28812 * 25 24 23 27 27 C 1.38278 * 120.14352 * 359.67874 * 19 18 17 28 28 C 1.38118 * 120.06975 * 0.02562 * 27 19 18 29 29 H 1.09004 * 109.46840 * 299.99865 * 1 2 3 30 30 H 1.08999 * 109.47167 * 60.00072 * 1 2 3 31 31 H 1.08994 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46840 * 240.00135 * 2 1 3 33 33 H 1.08999 * 109.47167 * 119.99928 * 2 1 3 34 34 H 1.09000 * 109.47544 * 29.99984 * 4 3 2 35 35 H 1.09005 * 109.47242 * 150.00665 * 4 3 2 36 36 H 0.97001 * 120.00631 * 180.02562 * 8 7 5 37 37 H 0.96998 * 119.99825 * 4.58700 * 15 13 3 38 38 H 1.07996 * 120.02996 * 359.97438 * 17 16 15 39 39 H 1.07993 * 119.96006 * 180.27826 * 18 17 16 40 40 H 1.08992 * 109.47354 * 35.02575 * 20 19 18 41 41 H 1.09007 * 109.46883 * 155.02585 * 20 19 18 42 42 H 1.07997 * 126.59163 * 0.03719 * 22 21 20 43 43 H 1.07995 * 125.98837 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.47045 * 275.15728 * 26 25 24 45 45 H 1.08997 * 109.46784 * 35.15657 * 26 25 24 46 46 H 1.09002 * 109.46927 * 155.15551 * 26 25 24 47 47 H 1.07996 * 119.96716 * 180.02562 * 27 19 18 48 48 H 1.08001 * 120.03499 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3904 -2.8776 8 7 5.3912 2.1834 -3.2575 9 14 3.0133 3.4370 -3.9282 10 1 3.1170 4.8570 -3.5060 11 1 3.4063 3.3148 -5.3550 12 1 1.6135 2.9712 -3.7587 13 6 2.2430 2.0166 1.1671 14 8 2.6487 3.1628 1.1671 15 7 2.0189 1.3811 2.3343 16 6 2.1597 2.0699 3.5444 17 6 3.1443 3.0394 3.6827 18 6 3.2765 3.7219 4.8762 19 6 2.4378 3.4319 5.9367 20 6 2.5893 4.1737 7.2397 21 7 3.6173 3.5226 8.0557 22 6 4.9404 3.8671 8.1219 23 6 5.5223 3.0140 8.9863 24 7 4.5800 2.1720 9.4360 25 6 3.4352 2.4745 8.8875 26 6 2.1275 1.7686 9.1377 27 6 1.4601 2.4630 5.8041 28 6 1.3188 1.7813 4.6112 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1385 36 1 5.7174 2.5745 -4.0831 37 1 1.7601 0.4463 2.3356 38 1 3.8029 3.2626 2.8565 39 1 4.0390 4.4790 4.9829 40 1 2.8832 5.2039 7.0392 41 1 1.6402 4.1643 7.7756 42 1 5.4246 4.6690 7.5844 43 1 6.5647 3.0092 9.2686 44 1 2.0540 0.8982 8.4858 45 1 2.0811 1.4480 10.1784 46 1 1.3017 2.4490 8.9299 47 1 0.8064 2.2391 6.6340 48 1 0.5553 1.0243 4.5083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096456332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 71.084351 kcal Electronic energy + Delta-G solvation = -29165.613020 eV Core-core repulsion = 25222.190308 eV Total energy + Delta-G solvation = -3943.422712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22930 -40.46702 -38.84633 -35.89355 -35.16455 -33.76950 -32.65338 -31.97170 -30.95867 -30.45323 -30.19228 -27.81074 -27.06066 -25.84576 -23.23107 -23.10264 -22.77726 -21.54380 -21.30657 -19.83221 -19.42947 -18.08664 -17.33987 -17.10103 -16.90640 -16.41959 -15.50720 -15.21499 -14.98050 -14.74338 -14.45063 -14.05679 -14.00082 -13.92339 -13.77575 -13.53493 -13.46803 -13.20912 -12.95599 -12.79667 -12.57842 -12.50947 -12.47118 -12.35340 -12.04081 -11.89595 -11.54375 -11.23392 -11.08919 -10.87403 -10.56006 -10.31202 -10.17819 -10.01575 -9.76955 -9.62484 -9.41088 -8.93624 -8.63394 -8.45712 -8.16060 -7.74339 -6.12939 -4.12239 1.10413 1.37855 1.93941 2.69600 2.98875 3.04913 3.25757 3.31588 3.33754 3.53164 3.89807 4.20462 4.29981 4.33673 4.35217 4.46970 4.66772 4.83668 4.87385 4.97064 5.09492 5.12228 5.19244 5.28322 5.29529 5.32693 5.39328 5.47259 5.54678 5.56097 5.64104 5.69499 5.81109 5.93280 6.02814 6.11725 6.20710 6.25436 6.33469 6.45164 6.56513 6.60905 6.65459 6.81366 7.05135 7.10211 7.16074 7.38428 7.56107 7.99914 8.34061 8.42254 8.89468 9.03086 9.46835 11.00397 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.002371 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.922890 B =11807.664508 C =12681.223071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.601 5.601 4 C 0.231 3.769 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.702 3.298 14 O -0.567 6.567 15 N -0.696 5.696 16 C 0.193 3.807 17 C -0.120 4.120 18 C -0.076 4.076 19 C -0.149 4.149 20 C 0.151 3.849 21 N -0.448 5.448 22 C -0.055 4.055 23 C -0.031 4.031 24 N -0.496 5.496 25 C 0.205 3.795 26 C -0.068 4.068 27 C -0.081 4.081 28 C -0.157 4.157 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.403 0.597 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -0.872 21.252 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.335 5.335 4 C 0.110 3.890 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.404 3.596 14 O -0.443 6.443 15 N -0.345 5.345 16 C 0.096 3.904 17 C -0.140 4.140 18 C -0.095 4.095 19 C -0.151 4.151 20 C 0.029 3.971 21 N -0.131 5.131 22 C -0.188 4.188 23 C -0.179 4.179 24 N -0.216 5.216 25 C -0.057 4.057 26 C -0.126 4.126 27 C -0.100 4.100 28 C -0.178 4.178 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.240 0.760 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.190 0.810 43 H 0.185 0.815 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.690 -0.566 21.416 23.943 hybrid contribution -0.517 0.718 -1.470 1.715 sum -11.207 0.152 19.946 22.880 Atomic orbital electron populations 1.22256 0.96535 1.01712 1.02475 1.21416 0.93549 0.83891 1.02954 1.47263 1.67194 1.13428 1.05619 1.19615 0.97346 0.93213 0.78787 1.21333 0.95351 1.33032 1.07196 0.90781 1.24844 0.95001 0.95787 0.97323 1.69892 1.15131 1.44868 1.23579 0.86858 0.81398 0.81638 0.79808 1.19883 1.21041 1.19084 1.15869 0.78971 0.84742 0.80067 1.90891 1.51069 1.16870 1.85507 1.42993 1.73515 1.14271 1.03694 1.17660 0.93570 0.94165 0.84982 1.21492 0.97617 0.96724 0.98211 1.20879 0.97809 0.98783 0.92071 1.19708 0.99707 1.00718 0.94950 1.20669 0.91236 0.96322 0.88853 1.45526 1.08580 1.25955 1.33003 1.22703 0.83966 1.05530 1.06560 1.22243 0.99428 0.95686 1.00551 1.70219 0.98505 1.26370 1.26500 1.23227 0.97174 0.91013 0.94257 1.20199 0.89112 0.99436 1.03869 1.20676 0.97503 0.94977 0.96861 1.20819 0.99929 1.03469 0.93617 0.93000 0.91944 0.91811 0.89153 0.92128 0.94994 0.94422 0.92511 0.75956 0.83404 0.86038 0.88225 0.88455 0.81047 0.81534 0.90044 0.89499 0.91066 0.85943 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.60 -11.86 2.46 -180.79 -0.44 -12.31 16 4 C 0.23 5.48 4.23 -5.19 -0.02 5.46 16 5 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.88 21.18 27.47 -169.99 -4.67 16.52 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.70 14.04 8.12 -86.92 -0.71 13.33 16 14 O -0.57 -13.59 13.37 5.29 0.07 -13.52 16 15 N -0.70 -10.58 5.22 -14.22 -0.07 -10.65 16 16 C 0.19 2.80 6.29 -83.68 -0.53 2.27 16 17 C -0.12 -1.88 8.69 -39.39 -0.34 -2.23 16 18 C -0.08 -0.95 9.71 -39.61 -0.38 -1.34 16 19 C -0.15 -1.52 5.46 -104.59 -0.57 -2.09 16 20 C 0.15 1.17 6.00 -5.19 -0.03 1.14 16 21 N -0.45 -4.45 2.73 -115.18 -0.31 -4.76 16 22 C -0.05 -0.56 11.58 -16.56 -0.19 -0.75 16 23 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 24 N -0.50 -6.62 11.25 -10.82 -0.12 -6.74 16 25 C 0.21 2.26 7.90 -155.41 -1.23 1.03 16 26 C -0.07 -0.49 10.11 36.01 0.36 -0.12 16 27 C -0.08 -0.77 9.67 -39.61 -0.38 -1.16 16 28 C -0.16 -1.74 9.97 -39.39 -0.39 -2.13 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.40 4.86 6.52 -40.82 -0.27 4.59 16 38 H 0.15 2.81 6.24 -52.49 -0.33 2.48 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.10 0.54 7.04 -51.93 -0.37 0.18 16 42 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.35 6.87 -51.93 -0.36 -0.01 16 47 H 0.12 0.81 7.77 -52.49 -0.41 0.40 16 48 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -36.51 398.60 -10.50 -47.00 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.01 Total: 5.53 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -4.71 Total: -0.52 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.18 Total: -61.01 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.51 -10.50 -47.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096456332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.086 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds