Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35955 * 117.00155 * 2 1 4 4 C 1.38037 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.40059 * 119.83732 * 180.27354 * 4 3 2 6 6 C 1.46833 * 120.08614 * 179.70179 * 5 4 3 7 7 C 1.35299 * 119.99689 * 226.15487 * 6 5 4 8 8 C 1.41776 * 119.99964 * 11.01195 * 7 6 5 9 9 O 1.21778 * 120.00323 * 6.81380 * 8 7 6 10 10 C 1.47789 * 119.99759 * 186.81773 * 8 7 6 11 11 C 1.39682 * 120.16555 * 359.72128 * 10 8 7 12 12 C 1.37851 * 119.87023 * 179.74608 * 11 10 8 13 13 C 1.38468 * 120.22463 * 0.53522 * 12 11 10 14 14 C 1.38239 * 120.34023 * 359.71741 * 13 12 11 15 15 C 1.38299 * 120.11357 * 0.02638 * 14 13 12 16 16 F 1.35098 * 120.10366 * 179.97438 * 15 14 13 17 17 C 1.40114 * 119.82703 * 359.44889 * 5 4 3 18 18 C 1.37602 * 119.99684 * 0.54907 * 17 5 4 19 19 C 1.39103 * 120.16766 * 359.70419 * 18 17 5 20 20 O 1.35577 * 119.91772 * 180.02562 * 19 18 17 21 21 C 1.34741 * 117.00308 * 354.15825 * 20 19 18 22 22 H 1.07996 * 119.99355 * 5.06789 * 21 20 19 23 23 C 1.38743 * 120.00327 * 185.07393 * 21 20 19 24 24 N 1.31493 * 119.99912 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46853 * 59.99858 * 25 23 21 27 27 H 1.48502 * 109.47142 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47038 * 300.00144 * 25 23 21 29 29 H 1.08997 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47020 * 299.99499 * 1 2 3 31 31 H 1.08998 * 109.47381 * 59.99296 * 1 2 3 32 32 H 1.08002 * 120.08373 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00021 * 46.15208 * 6 5 4 34 34 H 1.08003 * 119.99498 * 191.00707 * 7 6 5 35 35 H 1.07997 * 120.06195 * 359.97438 * 11 10 8 36 36 H 1.08000 * 119.88550 * 180.23452 * 12 11 10 37 37 H 1.08000 * 119.83262 * 179.74660 * 13 12 11 38 38 H 1.07993 * 119.94379 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.00087 * 180.30193 * 17 5 4 40 40 H 1.08000 * 119.91863 * 179.72124 * 18 17 5 41 41 H 0.97001 * 120.00359 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2944 2.3690 0.0005 5 6 1.9337 3.6151 -0.0053 6 6 1.1393 4.8500 -0.0113 7 6 1.4561 5.8540 -0.8612 8 6 2.3958 5.6336 -1.8997 9 8 2.8242 4.5125 -2.1055 10 6 2.8553 6.7647 -2.7325 11 6 2.3618 8.0512 -2.5033 12 6 2.7986 9.1027 -3.2804 13 6 3.7163 8.8859 -4.2943 14 6 4.2067 7.6156 -4.5325 15 6 3.7821 6.5514 -3.7580 16 9 4.2611 5.3099 -3.9913 17 6 3.3333 3.6804 0.0001 18 6 4.0760 2.5220 -0.0004 19 6 3.4409 1.2844 0.0000 20 8 4.1776 0.1463 0.0001 21 6 5.5126 0.2817 -0.1224 22 1 5.9568 1.2660 -0.1326 23 6 6.3166 -0.8434 -0.2357 24 7 5.7758 -2.0419 -0.2230 25 14 8.1672 -0.6556 -0.4063 26 1 8.7048 0.0512 0.7840 27 1 8.7936 -1.9981 -0.5091 28 1 8.4745 0.1295 -1.6288 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2158 2.3140 0.0005 33 1 0.3020 4.9568 0.6625 34 1 0.9931 6.8232 -0.7484 35 1 1.6422 8.2223 -1.7163 36 1 2.4200 10.0981 -3.1008 37 1 4.0511 9.7136 -4.9019 38 1 4.9226 7.4539 -5.3247 39 1 3.8292 4.6398 0.0006 40 1 5.1548 2.5738 -0.0008 41 1 6.3378 -2.8285 -0.3018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096766540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -49.917855 kcal Electronic energy + Delta-G solvation = -28737.733220 eV Core-core repulsion = 24465.184557 eV Total energy + Delta-G solvation = -4272.548663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.110 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.81320 -40.11063 -39.37181 -38.32222 -37.48611 -36.00289 -33.13716 -32.26981 -31.61988 -30.65045 -29.49518 -28.59233 -26.56874 -25.51253 -24.72818 -23.31302 -22.23295 -21.51018 -20.91557 -18.78099 -18.06981 -17.94398 -17.40750 -16.50773 -16.40419 -16.03111 -15.62628 -15.38390 -15.08585 -14.92824 -14.66110 -14.57213 -14.21461 -14.08189 -13.69567 -13.41133 -13.35815 -13.22844 -13.10806 -12.78093 -12.38414 -12.27844 -12.13518 -11.70689 -11.61041 -11.37631 -11.35316 -11.05660 -10.90565 -10.62533 -10.49136 -10.34685 -9.49819 -9.33076 -9.29964 -9.14605 -8.91470 -8.67553 -7.79292 -6.67965 -6.44705 -3.96208 0.36000 0.96087 1.20701 2.27905 2.55518 3.06368 3.15159 3.18344 3.19899 3.74748 3.97610 4.02236 4.09631 4.24749 4.46185 4.58473 4.62716 4.86822 5.01106 5.06097 5.15324 5.19861 5.27262 5.50877 5.55475 5.59193 5.61810 5.71322 5.78216 5.79264 5.86756 5.91048 5.94743 6.05743 6.23508 6.30198 6.42438 6.56747 6.62552 6.69125 6.99535 7.11943 7.26337 7.40812 7.67114 7.93168 7.96835 8.25512 8.99181 9.70691 10.71945 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.003494 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.612701 B = 8012.304297 C =10062.935854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.041 3.959 4 C -0.133 4.133 5 C -0.166 4.166 6 C 0.042 3.958 7 C -0.286 4.286 8 C 0.404 3.596 9 O -0.415 6.415 10 C -0.188 4.188 11 C -0.052 4.052 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.171 4.171 15 C 0.151 3.849 16 F -0.114 7.114 17 C -0.021 4.021 18 C -0.218 4.218 19 C 0.152 3.848 20 O -0.154 6.154 21 C -0.389 4.389 22 H 0.094 0.906 23 C 0.041 3.959 24 N -0.852 5.852 25 Si 0.942 3.058 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.268 1.268 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 21.270 -3.604 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.153 4.153 5 C -0.167 4.167 6 C 0.024 3.976 7 C -0.305 4.305 8 C 0.284 3.716 9 O -0.291 6.291 10 C -0.190 4.190 11 C -0.070 4.070 12 C -0.167 4.167 13 C -0.089 4.089 14 C -0.190 4.190 15 C 0.131 3.869 16 F -0.092 7.092 17 C -0.039 4.039 18 C -0.237 4.237 19 C 0.096 3.904 20 O -0.055 6.055 21 C -0.465 4.465 22 H 0.111 0.889 23 C -0.165 4.165 24 N -0.485 5.485 25 Si 0.766 3.234 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.193 1.193 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.118 0.882 40 H 0.151 0.849 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.309 19.897 -3.725 21.881 hybrid contribution 0.714 0.391 -0.282 0.861 sum -7.595 20.287 -4.006 22.030 Atomic orbital electron populations 1.22858 0.80612 1.02787 1.00107 1.86226 1.19201 1.26403 1.90029 1.17915 0.89321 0.84383 1.08720 1.20656 0.98022 0.90841 1.05732 1.18060 0.92858 0.91357 1.14450 1.22538 0.92749 0.91034 0.91322 1.22165 1.06907 1.00803 1.00611 1.19047 0.81226 0.87344 0.83973 1.90933 1.49061 1.23761 1.65359 1.21003 1.01226 0.97181 0.99609 1.21354 0.97178 0.90589 0.97873 1.21174 0.99195 0.99456 0.96832 1.21180 0.95068 0.96102 0.96523 1.21203 1.03588 0.92338 1.01879 1.17988 0.93760 0.80514 0.94612 1.91635 1.85719 1.38690 1.93107 1.20530 0.91945 0.96684 0.94786 1.20743 1.00407 0.90833 1.11718 1.18818 0.88251 0.87536 0.95747 1.83969 1.19574 1.25776 1.76214 1.21420 0.78622 0.94876 1.51557 0.88851 1.25345 1.00608 0.94171 0.96364 1.70030 1.36462 0.97691 1.44286 0.85769 0.80257 0.78021 0.79368 1.19365 1.20178 1.19313 0.89188 0.93711 0.93720 0.86405 0.85956 0.85587 0.84225 0.85012 0.84876 0.84372 0.88166 0.84947 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.30 -6.97 10.28 -34.20 -0.35 -7.32 16 3 C 0.04 0.96 6.70 -39.13 -0.26 0.70 16 4 C -0.13 -2.58 8.78 -38.97 -0.34 -2.92 16 5 C -0.17 -3.07 4.38 -105.04 -0.46 -3.53 16 6 C 0.04 0.58 9.78 -37.15 -0.36 0.22 16 7 C -0.29 -3.61 9.24 -39.28 -0.36 -3.97 16 8 C 0.40 6.31 6.06 -34.33 -0.21 6.10 16 9 O -0.41 -8.39 11.18 5.12 0.06 -8.33 16 10 C -0.19 -2.47 5.88 -104.85 -0.62 -3.09 16 11 C -0.05 -0.47 9.43 -39.18 -0.37 -0.84 16 12 C -0.15 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.07 -0.55 10.04 -39.50 -0.40 -0.94 16 14 C -0.17 -1.76 10.02 -39.56 -0.40 -2.16 16 15 C 0.15 2.11 7.29 -38.95 -0.28 1.82 16 16 F -0.11 -1.99 15.55 2.25 0.04 -1.95 16 17 C -0.02 -0.42 6.70 -39.11 -0.26 -0.69 16 18 C -0.22 -5.13 9.14 -39.49 -0.36 -5.49 16 19 C 0.15 3.98 6.67 -38.73 -0.26 3.73 16 20 O -0.15 -4.64 9.52 -13.78 -0.13 -4.77 16 21 C -0.39 -11.30 9.48 30.92 0.29 -11.01 16 22 H 0.09 2.51 5.18 -52.49 -0.27 2.24 16 23 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 24 N -0.85 -25.63 13.67 55.48 0.76 -24.87 16 25 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 32 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.13 1.08 6.27 -52.48 -0.33 0.76 16 35 H 0.14 0.91 6.22 -52.49 -0.33 0.59 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.10 1.87 7.28 -52.49 -0.38 1.49 16 40 H 0.13 3.10 5.62 -52.49 -0.29 2.80 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -36.10 356.85 -7.41 -43.51 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.98 Total: 3.34 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -4.15 Total: -21.01 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.76 Total: -24.87 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.43 Total: -20.43 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.10 -7.41 -43.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096766540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.412 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds