Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35958 * 116.99969 * 2 1 4 4 C 1.38036 * 119.99784 * 0.25983 * 3 2 1 5 5 C 1.40051 * 119.82975 * 180.29457 * 4 3 2 6 6 C 1.46840 * 120.08188 * 179.71837 * 5 4 3 7 7 C 1.35295 * 120.00002 * 316.31275 * 6 5 4 8 8 C 1.41771 * 120.00341 * 348.25592 * 7 6 5 9 9 O 1.21781 * 119.99800 * 353.42634 * 8 7 6 10 10 C 1.47809 * 120.00592 * 173.42037 * 8 7 6 11 11 C 1.39681 * 120.11484 * 359.72556 * 10 8 7 12 12 C 1.37824 * 119.87847 * 180.27016 * 11 10 8 13 13 C 1.38674 * 120.12030 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.88118 * 179.97438 * 13 12 11 15 15 C 1.38670 * 120.24060 * 359.97438 * 13 12 11 16 16 C 1.37831 * 120.12320 * 359.97438 * 15 13 12 17 17 C 1.40110 * 119.83817 * 359.44732 * 5 4 3 18 18 C 1.37609 * 119.98900 * 0.27842 * 17 5 4 19 19 C 1.39096 * 120.17137 * 359.97438 * 18 17 5 20 20 O 1.35581 * 119.91915 * 180.02562 * 19 18 17 21 21 C 1.34736 * 116.99701 * 354.36859 * 20 19 18 22 22 H 1.07992 * 120.00479 * 5.05318 * 21 20 19 23 23 C 1.38750 * 119.99423 * 185.06160 * 21 20 19 24 24 N 1.31485 * 120.00165 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99676 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47402 * 89.99306 * 25 23 21 27 27 H 1.48496 * 109.46870 * 209.99782 * 25 23 21 28 28 H 1.48507 * 109.46900 * 329.99484 * 25 23 21 29 29 H 1.09002 * 109.46958 * 59.99476 * 1 2 3 30 30 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46558 * 299.99924 * 1 2 3 32 32 H 1.07997 * 120.08480 * 0.03736 * 4 3 2 33 33 H 1.08003 * 119.99599 * 136.30785 * 6 5 4 34 34 H 1.07999 * 120.00025 * 168.26253 * 7 6 5 35 35 H 1.08003 * 120.06158 * 0.25952 * 11 10 8 36 36 H 1.07999 * 119.94114 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.94275 * 180.02562 * 15 13 12 38 38 H 1.07995 * 120.06833 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.00733 * 180.24695 * 17 5 4 40 40 H 1.08000 * 119.91044 * 180.02562 * 18 17 5 41 41 H 0.97002 * 119.99774 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2944 2.3690 0.0054 5 6 1.9339 3.6150 -0.0008 6 6 1.1395 4.8500 -0.0014 7 6 0.0577 4.9581 -0.8067 8 6 -0.1687 3.9958 -1.8229 9 8 0.6692 3.1418 -2.0502 10 6 -1.4216 4.0289 -2.6063 11 6 -2.3869 5.0037 -2.3437 12 6 -3.5558 5.0266 -3.0735 13 6 -3.7748 4.0838 -4.0666 14 9 -4.9226 4.1104 -4.7786 15 6 -2.8199 3.1138 -4.3314 16 6 -1.6469 3.0823 -3.6084 17 6 3.3335 3.6804 -0.0009 18 6 4.0761 2.5219 -0.0005 19 6 3.4410 1.2844 0.0004 20 8 4.1777 0.1462 0.0012 21 6 5.5130 0.2818 -0.1166 22 1 5.9573 1.2661 -0.1241 23 6 6.3173 -0.8432 -0.2286 24 7 5.7764 -2.0417 -0.2192 25 14 8.1686 -0.6552 -0.3928 26 1 8.7875 -0.6522 0.9570 27 1 8.7128 -1.7876 -1.1844 28 1 8.4771 0.6237 -1.0816 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 0.2159 2.3141 0.0103 33 1 1.4187 5.6719 0.6412 34 1 -0.6334 5.7777 -0.6756 35 1 -2.2176 5.7382 -1.5701 36 1 -4.3030 5.7797 -2.8710 37 1 -2.9953 2.3821 -5.1062 38 1 -0.9040 2.3262 -3.8151 39 1 3.8294 4.6397 -0.0017 40 1 5.1548 2.5737 -0.0001 41 1 6.3388 -2.8282 -0.2971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096766558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = -52.578456 kcal Electronic energy + Delta-G solvation = -28451.481229 eV Core-core repulsion = 24178.817193 eV Total energy + Delta-G solvation = -4272.664036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.110 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -49.23516 -40.32763 -39.42547 -38.20233 -37.51851 -36.07767 -33.19749 -32.30337 -31.46066 -31.09752 -29.46282 -28.50379 -26.70570 -25.57830 -24.65722 -23.34912 -22.36833 -21.50089 -20.97242 -18.92750 -18.19973 -18.05593 -17.47616 -16.83894 -16.42041 -16.06190 -15.91541 -15.27626 -15.18664 -14.98226 -14.72900 -14.43914 -14.29950 -13.96993 -13.78569 -13.62571 -13.43836 -13.33349 -13.23090 -12.89121 -12.69215 -12.30333 -12.23388 -11.75455 -11.61441 -11.40433 -11.22694 -11.07367 -10.97941 -10.64353 -10.51444 -10.36863 -9.55930 -9.46702 -9.45608 -9.25333 -8.97356 -8.75381 -7.59239 -6.81862 -6.51323 -4.02569 0.27371 0.94242 1.12354 2.30784 2.45668 2.98982 3.10636 3.12559 3.16624 3.74119 3.88874 3.91513 4.07657 4.20415 4.39197 4.53829 4.55378 4.90992 4.98574 5.00541 5.12325 5.17510 5.26644 5.50355 5.58600 5.59851 5.61574 5.63268 5.68755 5.75412 5.77615 5.89015 5.92175 6.05343 6.19643 6.29702 6.45856 6.49397 6.56643 6.63585 6.95559 7.11400 7.20679 7.33022 7.62384 7.88021 7.90327 8.22192 8.92396 9.64256 10.65190 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.002544 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.920651 B =11003.193490 C =11562.586266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.050 3.950 4 C -0.091 4.091 5 C -0.169 4.169 6 C 0.046 3.954 7 C -0.295 4.295 8 C 0.406 3.594 9 O -0.427 6.427 10 C -0.160 4.160 11 C -0.051 4.051 12 C -0.168 4.168 13 C 0.116 3.884 14 F -0.139 7.139 15 C -0.165 4.165 16 C -0.040 4.040 17 C -0.058 4.058 18 C -0.233 4.233 19 C 0.153 3.847 20 O -0.152 6.152 21 C -0.389 4.389 22 H 0.096 0.904 23 C 0.040 3.960 24 N -0.849 5.849 25 Si 0.943 3.057 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.617 14.180 -2.673 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.218 6.218 3 C 0.005 3.995 4 C -0.111 4.111 5 C -0.170 4.170 6 C 0.027 3.973 7 C -0.314 4.314 8 C 0.288 3.712 9 O -0.305 6.305 10 C -0.161 4.161 11 C -0.069 4.069 12 C -0.186 4.186 13 C 0.096 3.904 14 F -0.117 7.117 15 C -0.183 4.183 16 C -0.058 4.058 17 C -0.076 4.076 18 C -0.252 4.252 19 C 0.097 3.903 20 O -0.054 6.054 21 C -0.465 4.465 22 H 0.113 0.887 23 C -0.166 4.166 24 N -0.482 5.482 25 Si 0.767 3.233 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.190 1.190 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.105 13.005 -2.829 20.132 hybrid contribution 0.171 0.476 -0.345 0.612 sum -14.934 13.481 -3.173 20.368 Atomic orbital electron populations 1.22853 0.80548 1.02730 1.00141 1.86217 1.19259 1.26421 1.89871 1.17982 0.89288 0.84466 1.07714 1.20533 0.97636 0.90680 1.02233 1.18078 0.92833 0.91443 1.14630 1.22572 0.89869 0.94260 0.90604 1.22168 1.02926 1.04472 1.01849 1.19101 0.84771 0.83891 0.83472 1.90880 1.43042 1.33206 1.63360 1.20914 0.97780 0.97811 0.99579 1.21317 0.91466 0.96749 0.97389 1.21114 0.99748 1.00337 0.97436 1.17994 0.82876 0.96994 0.92516 1.91508 1.47424 1.96015 1.76772 1.21164 0.94285 0.99933 1.02947 1.21323 0.95715 0.96850 0.91923 1.20715 0.92080 0.97175 0.97667 1.20717 1.00428 0.90806 1.13270 1.18855 0.88218 0.87584 0.95649 1.83973 1.19593 1.25885 1.75912 1.21485 0.78545 0.94934 1.51505 0.88685 1.25381 1.00704 0.94182 0.96325 1.70039 1.36442 0.97752 1.43919 0.85678 0.80215 0.78604 0.78765 1.19731 1.20141 1.19006 0.93591 0.89165 0.93897 0.87093 0.85877 0.85676 0.84058 0.84370 0.84282 0.83773 0.87181 0.84830 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.30 -6.94 10.28 -34.22 -0.35 -7.29 16 3 C 0.05 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.09 -1.76 5.63 -38.98 -0.22 -1.98 16 5 C -0.17 -2.96 4.48 -105.04 -0.47 -3.43 16 6 C 0.05 0.60 9.80 -37.15 -0.36 0.23 16 7 C -0.30 -3.47 9.22 -39.28 -0.36 -3.83 16 8 C 0.41 5.66 5.98 -34.32 -0.21 5.46 16 9 O -0.43 -7.71 12.06 5.12 0.06 -7.65 16 10 C -0.16 -1.84 5.88 -104.91 -0.62 -2.46 16 11 C -0.05 -0.45 9.43 -39.19 -0.37 -0.82 16 12 C -0.17 -1.42 10.01 -39.57 -0.40 -1.82 16 13 C 0.12 1.13 7.31 -39.26 -0.29 0.85 16 14 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 15 C -0.16 -1.63 10.01 -39.57 -0.40 -2.03 16 16 C -0.04 -0.46 9.59 -39.19 -0.38 -0.83 16 17 C -0.06 -1.07 9.78 -39.11 -0.38 -1.45 16 18 C -0.23 -5.10 9.14 -39.49 -0.36 -5.46 16 19 C 0.15 3.86 6.67 -38.73 -0.26 3.60 16 20 O -0.15 -4.47 9.52 -13.77 -0.13 -4.60 16 21 C -0.39 -10.88 9.48 30.92 0.29 -10.59 16 22 H 0.10 2.42 5.18 -52.49 -0.27 2.15 16 23 C 0.04 1.10 5.50 -17.51 -0.10 1.00 16 24 N -0.85 -24.94 13.67 55.48 0.76 -24.18 16 25 Si 0.94 20.28 29.55 -169.99 -5.02 15.25 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 29 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 32 H 0.11 1.92 5.28 -52.49 -0.28 1.64 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.01 6.27 -52.49 -0.33 0.68 16 35 H 0.14 0.88 6.22 -52.48 -0.33 0.56 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -33.62 358.28 -7.33 -40.95 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.94 Total: 4.63 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -4.14 Total: -21.14 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.76 Total: -24.18 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.42 Total: -19.54 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.62 -7.33 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096766558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds