Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99841 * 2 1 3 5 5 H 1.07999 * 120.00376 * 119.99739 * 4 2 1 6 6 C 1.37876 * 120.00418 * 300.00150 * 4 2 1 7 7 N 1.31518 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47193 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47320 * 119.99881 * 8 6 4 11 11 H 1.48506 * 109.47170 * 239.99433 * 8 6 4 12 12 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 13 13 C 1.34777 * 120.00271 * 84.99619 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 13 18 18 C 1.38208 * 119.98824 * 264.72248 * 17 16 15 19 19 C 1.38436 * 119.98472 * 179.75199 * 18 17 16 20 20 F 1.35099 * 120.02097 * 180.27259 * 19 18 17 21 21 C 1.38485 * 119.96657 * 0.54638 * 19 18 17 22 22 C 1.38167 * 119.98246 * 359.70603 * 21 19 18 23 23 C 1.38301 * 119.99510 * 84.99861 * 17 16 15 24 24 Br 1.89106 * 119.98348 * 359.97438 * 23 17 16 25 25 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 26 26 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 28 28 H 0.97003 * 120.00117 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00266 * 265.00202 * 12 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 31 31 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 32 32 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 33 33 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 34 34 H 1.08002 * 120.00994 * 359.97438 * 18 17 16 35 35 H 1.07997 * 120.00685 * 179.68505 * 21 19 18 36 36 H 1.08001 * 119.98971 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1455 -2.2876 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7289 -3.5878 16 6 2.7008 0.2544 -4.7588 17 6 3.2020 -0.4564 -5.9896 18 6 4.5427 -0.4022 -6.3208 19 6 5.0039 -1.0594 -7.4485 20 9 6.3152 -1.0114 -7.7700 21 6 4.1194 -1.7614 -8.2503 22 6 2.7785 -1.8104 -7.9207 23 6 2.3194 -1.1581 -6.7904 24 35 0.4839 -1.2258 -6.3402 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 1.9758 -1.5507 -3.8326 31 1 3.6478 -1.1215 -3.3986 32 1 1.7018 0.6472 -4.9481 33 1 3.3739 1.0759 -4.5138 34 1 5.2311 0.1498 -5.6980 35 1 4.4777 -2.2701 -9.1330 36 1 2.0887 -2.3582 -8.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097107241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = -72.317995 kcal Electronic energy + Delta-G solvation = -20902.560803 eV Core-core repulsion = 17346.754350 eV Total energy + Delta-G solvation = -3555.806453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.032 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.25838 -39.80229 -38.74444 -34.96866 -34.03730 -32.37030 -32.32683 -30.47421 -29.23419 -28.46828 -25.28322 -24.87525 -23.00535 -21.75834 -20.68917 -19.34891 -17.66932 -17.11588 -16.95114 -16.27240 -15.95852 -15.66702 -15.23766 -15.05444 -14.43046 -14.28168 -13.83650 -13.53669 -13.41437 -12.89020 -12.63744 -12.38215 -12.15474 -11.95048 -11.66067 -11.46487 -11.17803 -11.07329 -10.95537 -10.77160 -10.67254 -10.29824 -10.28306 -10.23598 -9.41661 -9.04014 -8.98832 -8.80684 -8.54759 -7.88967 -6.12227 -4.21377 0.55818 0.76325 1.37759 3.03292 3.23466 3.31293 3.33934 3.42650 3.78978 4.06178 4.28348 4.36597 4.46195 4.72722 4.83287 5.09442 5.16801 5.20164 5.26422 5.38669 5.56797 5.66488 5.68753 5.71904 5.83919 6.16920 6.17893 6.38362 6.83874 6.98226 7.16716 7.48050 7.57507 7.70441 7.92653 8.16002 8.68723 8.78979 9.15067 9.46482 10.93775 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002870 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.864703 B = 9753.208221 C =10842.726205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.503 3.497 14 O -0.556 6.556 15 C -0.136 4.136 16 C -0.077 4.077 17 C -0.017 4.017 18 C -0.146 4.146 19 C 0.117 3.883 20 F -0.135 7.135 21 C -0.158 4.158 22 C -0.059 4.059 23 C -0.106 4.106 24 Br -0.033 7.033 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -7.011 -23.104 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.287 3.713 14 O -0.435 6.435 15 C -0.177 4.177 16 C -0.114 4.114 17 C -0.019 4.019 18 C -0.166 4.166 19 C 0.097 3.903 20 F -0.114 7.114 21 C -0.178 4.178 22 C -0.079 4.079 23 C -0.185 4.185 24 Br 0.053 6.947 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.432 -6.064 -22.798 23.716 hybrid contribution 1.094 -0.988 0.695 1.629 sum 3.526 -7.051 -22.103 23.467 Atomic orbital electron populations 1.22072 0.98518 0.99074 1.00879 1.18732 0.91007 0.93980 0.80093 0.93394 1.21268 1.32333 1.13178 0.90368 0.92044 1.24897 0.94836 0.94962 0.99079 1.69918 1.35957 1.22480 1.23748 0.86400 0.78605 0.79531 0.82595 1.19737 1.20877 1.20884 1.46529 1.65057 1.13548 1.10597 1.20315 0.78726 0.87525 0.84709 1.90654 1.51508 1.16133 1.85224 1.21633 1.03187 0.99391 0.93462 1.20565 1.04082 0.97402 0.89377 1.19786 0.91818 0.94521 0.95784 1.21111 0.95918 1.02209 0.97326 1.17775 0.78195 0.98871 0.95465 1.91528 1.32695 1.94750 1.92377 1.21107 0.92962 1.02285 1.01399 1.20957 0.95140 0.96944 0.94880 1.21873 0.92099 1.05081 0.99490 1.96793 1.06748 1.97726 1.93454 0.96639 0.95518 0.89207 0.92646 0.77935 0.89154 0.89303 0.88644 0.89237 0.83592 0.83983 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.70 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.71 -14.59 5.07 -54.94 -0.28 -14.87 16 13 C 0.50 9.67 7.79 -10.98 -0.09 9.59 16 14 O -0.56 -12.89 15.64 5.56 0.09 -12.80 16 15 C -0.14 -1.86 5.67 -27.88 -0.16 -2.02 16 16 C -0.08 -0.98 4.07 -27.88 -0.11 -1.09 16 17 C -0.02 -0.18 5.13 -104.61 -0.54 -0.72 16 18 C -0.15 -1.44 9.66 -39.52 -0.38 -1.83 16 19 C 0.12 1.11 7.30 -39.42 -0.29 0.82 16 20 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 21 C -0.16 -1.25 10.03 -39.52 -0.40 -1.65 16 22 C -0.06 -0.49 9.79 -39.57 -0.39 -0.87 16 23 C -0.11 -1.07 6.22 -39.52 -0.25 -1.32 16 24 Br -0.03 -0.36 31.36 -68.01 -2.13 -2.49 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 30 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.34 6.84 -51.93 -0.36 0.98 16 33 H 0.09 1.17 8.01 -51.93 -0.42 0.75 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -30.41 332.33 -8.79 -39.20 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.30 Total: 4.63 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.82 Total: -8.64 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.35 Total: -39.17 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.13 Total: -2.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.41 -8.79 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097107241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.119 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds