Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46500 * 179.97438 * 16 15 13 18 18 C 1.38217 * 119.99406 * 264.71996 * 17 16 15 19 19 C 1.38433 * 119.98319 * 179.75115 * 18 17 16 20 20 F 1.35094 * 120.01615 * 180.27604 * 19 18 17 21 21 C 1.38488 * 119.96931 * 0.55325 * 19 18 17 22 22 C 1.38165 * 119.98541 * 359.70117 * 21 19 18 23 23 C 1.38310 * 119.99321 * 85.00386 * 17 16 15 24 24 Br 1.89104 * 119.98319 * 359.97438 * 23 17 16 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 31 31 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 32 32 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 33 33 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 34 34 H 1.08000 * 120.00345 * 359.97438 * 18 17 16 35 35 H 1.08002 * 120.00578 * 179.68096 * 21 19 18 36 36 H 1.07996 * 119.99311 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2028 -0.4557 5.9893 18 6 2.3045 -0.9764 6.9016 19 6 2.7661 -1.6335 8.0293 20 9 1.8887 -2.1475 8.9186 21 6 4.1278 -1.7586 8.2482 22 6 5.0247 -1.2330 7.3381 23 6 4.5627 -0.5814 6.2085 24 35 5.7910 0.1376 4.9634 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 1.9776 -1.5506 3.8326 31 1 3.6492 -1.1202 3.3980 32 1 3.3726 1.0773 4.5141 33 1 1.7011 0.6461 4.9483 34 1 1.2427 -0.8738 6.7329 35 1 4.4886 -2.2666 9.1304 36 1 6.0867 -1.3309 7.5085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097107242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -72.231895 kcal Electronic energy + Delta-G solvation = -20899.927231 eV Core-core repulsion = 17344.124512 eV Total energy + Delta-G solvation = -3555.802719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.26250 -39.79990 -38.74301 -34.96765 -34.03603 -32.36773 -32.32183 -30.47297 -29.22950 -28.46697 -25.28256 -24.87344 -23.00294 -21.75835 -20.68743 -19.34933 -17.66944 -17.10286 -16.96363 -16.26882 -15.96122 -15.66766 -15.23786 -15.03344 -14.45145 -14.26230 -13.85352 -13.56544 -13.38758 -12.82931 -12.71105 -12.37840 -12.10782 -11.94954 -11.69757 -11.43321 -11.18614 -11.06217 -10.94782 -10.78616 -10.66214 -10.32119 -10.27426 -10.22703 -9.41575 -9.05246 -8.99000 -8.80235 -8.53953 -7.88981 -6.11677 -4.20986 0.55988 0.76378 1.38965 3.03388 3.25771 3.31026 3.32136 3.42639 3.78893 4.06230 4.28571 4.36641 4.46363 4.72750 4.83378 5.09522 5.16664 5.20584 5.26499 5.38694 5.56653 5.66505 5.69037 5.71825 5.83983 6.16851 6.18141 6.38395 6.83335 6.97340 7.16241 7.47991 7.57266 7.70425 7.92659 8.16152 8.68722 8.78958 9.15067 9.46711 10.94259 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.002897 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.707247 B = 9662.408502 C =10636.503417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.556 6.556 15 C -0.136 4.136 16 C -0.077 4.077 17 C -0.017 4.017 18 C -0.146 4.146 19 C 0.116 3.884 20 F -0.135 7.135 21 C -0.158 4.158 22 C -0.059 4.059 23 C -0.106 4.106 24 Br -0.032 7.032 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 -5.635 21.704 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.287 3.713 14 O -0.435 6.435 15 C -0.177 4.177 16 C -0.114 4.114 17 C -0.019 4.019 18 C -0.166 4.166 19 C 0.097 3.903 20 F -0.114 7.114 21 C -0.178 4.178 22 C -0.079 4.079 23 C -0.186 4.186 24 Br 0.054 6.946 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.776 -4.404 21.112 23.284 hybrid contribution -0.023 -1.297 -0.390 1.355 sum 8.753 -5.701 20.722 23.206 Atomic orbital electron populations 1.22075 0.98537 0.99048 1.00873 1.18724 0.90973 0.93991 0.80070 0.93387 1.21197 1.32475 1.13235 0.90393 0.92138 1.24891 0.94812 0.94956 0.99048 1.69895 1.35819 1.22449 1.23968 0.86512 0.79180 0.79593 0.81830 1.21132 1.20169 1.20162 1.46526 1.65048 1.13549 1.10605 1.20318 0.78672 0.87531 0.84754 1.90655 1.51500 1.16113 1.85249 1.21633 1.03351 0.99161 0.93529 1.20564 1.03796 0.97702 0.89359 1.19790 0.90927 0.95121 0.96081 1.21104 1.01376 1.00485 0.93622 1.17771 0.87184 0.96820 0.88562 1.91526 1.68548 1.84617 1.66677 1.21108 0.91140 1.03790 1.01713 1.20960 1.00456 0.94887 0.91610 1.21889 0.93619 1.05614 0.97434 1.96805 1.56996 1.83923 1.56883 0.95531 0.96680 0.89182 0.92528 0.77940 0.89369 0.89090 0.88602 0.89284 0.83625 0.83986 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.72 2.56 -69.09 -0.18 6.54 16 3 H 0.05 1.41 7.58 -51.92 -0.39 1.02 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.60 5.07 -54.93 -0.28 -14.88 16 13 C 0.50 9.68 7.79 -10.98 -0.09 9.59 16 14 O -0.56 -12.89 15.65 5.56 0.09 -12.80 16 15 C -0.14 -1.86 5.67 -27.88 -0.16 -2.02 16 16 C -0.08 -0.98 4.07 -27.88 -0.11 -1.09 16 17 C -0.02 -0.18 5.13 -104.60 -0.54 -0.72 16 18 C -0.15 -1.44 9.66 -39.52 -0.38 -1.82 16 19 C 0.12 1.10 7.30 -39.42 -0.29 0.81 16 20 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 21 C -0.16 -1.26 10.03 -39.52 -0.40 -1.65 16 22 C -0.06 -0.49 9.79 -39.57 -0.39 -0.88 16 23 C -0.11 -1.08 6.22 -39.51 -0.25 -1.33 16 24 Br -0.03 -0.35 31.36 -68.01 -2.13 -2.48 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.15 7.62 -51.93 -0.40 0.76 16 32 H 0.10 1.35 6.85 -51.93 -0.36 1.00 16 33 H 0.09 1.15 8.01 -51.93 -0.42 0.74 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -30.40 332.33 -8.79 -39.19 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.30 Total: 4.66 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.82 Total: -8.66 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.21 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.13 Total: -2.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.40 -8.79 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097107242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.041 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds