Wall clock time and date at job start Tue Mar 31 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33330 * 122.70959 * 2 1 4 4 S 1.76165 * 108.09680 * 179.78717 * 3 2 1 5 5 C 1.70971 * 90.35574 * 0.30450 * 4 3 2 6 6 N 1.38608 * 124.95208 * 179.97438 * 5 4 3 7 7 C 1.46850 * 110.99636 * 359.68763 * 6 5 4 8 8 C 1.53037 * 109.52257 * 185.83989 * 7 6 5 9 9 C 1.53117 * 109.27938 * 300.82912 * 8 7 6 10 10 N 1.46503 * 109.52259 * 177.55861 * 9 8 7 11 11 C 1.38857 * 120.00129 * 154.71685 * 10 9 8 12 12 C 1.39560 * 119.84212 * 0.02562 * 11 10 9 13 13 C 1.36333 * 120.16229 * 179.71612 * 12 11 10 14 14 C 1.40885 * 119.83400 * 0.54620 * 13 12 11 15 15 C 1.41139 * 120.15678 * 179.70036 * 14 13 12 16 16 H 1.08002 * 120.00145 * 204.62577 * 15 14 13 17 17 C 1.39871 * 119.99927 * 24.63157 * 15 14 13 18 18 N 1.30899 * 119.99721 * 17.95547 * 17 15 14 19 19 Si 1.86798 * 119.99792 * 197.95570 * 17 15 14 20 20 H 1.48498 * 109.47374 * 90.00193 * 19 17 15 21 21 H 1.48506 * 109.46852 * 209.99771 * 19 17 15 22 22 H 1.48501 * 109.47301 * 329.99654 * 19 17 15 23 23 C 1.40882 * 119.69209 * 359.72462 * 14 13 12 24 24 C 1.36347 * 119.83532 * 359.97438 * 23 14 13 25 25 C 1.53116 * 109.16419 * 57.65136 * 9 8 7 26 26 C 1.46835 * 111.00388 * 123.90345 * 6 5 4 27 27 N 1.29693 * 110.10000 * 359.69276 * 5 4 3 28 28 H 1.08997 * 109.47613 * 269.97390 * 1 2 3 29 29 H 1.09007 * 109.47511 * 29.97449 * 1 2 3 30 30 H 1.08997 * 109.47409 * 149.97407 * 1 2 3 31 31 H 1.08004 * 125.94840 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.45905 * 65.83063 * 7 6 5 33 33 H 1.08998 * 109.45562 * 305.85246 * 7 6 5 34 34 H 1.09004 * 109.50556 * 180.87882 * 8 7 6 35 35 H 1.09008 * 109.49897 * 60.77081 * 8 7 6 36 36 H 1.09005 * 109.52032 * 297.67861 * 9 8 7 37 37 H 0.97002 * 119.99566 * 334.99980 * 10 9 8 38 38 H 1.08007 * 119.92026 * 359.96782 * 12 11 10 39 39 H 1.07998 * 120.08922 * 180.27049 * 13 12 11 40 40 H 0.97003 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.08595 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.92152 * 179.97438 * 24 23 14 43 43 H 1.08999 * 109.50042 * 62.28685 * 25 9 8 44 44 H 1.08997 * 109.50436 * 182.40316 * 25 9 8 45 45 H 1.09003 * 109.46447 * 294.17813 * 26 6 5 46 46 H 1.09003 * 109.46555 * 54.14520 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1219 0.0000 4 16 3.9321 0.6774 0.0062 5 6 3.5111 -0.9796 -0.0009 6 7 4.4166 -2.0290 -0.0006 7 6 5.7984 -1.5317 -0.0009 8 6 6.7655 -2.7087 -0.1474 9 6 6.5544 -3.6840 1.0139 10 7 7.4369 -4.8415 0.8477 11 6 7.8298 -5.5799 1.9560 12 6 7.3816 -5.2168 3.2269 13 6 7.7586 -5.9407 4.3189 14 6 8.6121 -7.0507 4.1635 15 6 9.0117 -7.8011 5.2901 16 1 9.9304 -8.3683 5.2630 17 6 8.2180 -7.8101 6.4418 18 7 6.9661 -7.4333 6.3767 19 14 8.9445 -8.3600 8.0725 20 1 9.5196 -7.1872 8.7788 21 1 7.8788 -8.9680 8.9092 22 1 10.0124 -9.3621 7.8259 23 6 9.0652 -7.4081 2.8783 24 6 8.6750 -6.6787 1.7944 25 6 5.0957 -4.1494 1.0206 26 6 4.1770 -2.9307 1.1332 27 7 2.2209 -1.1117 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.8344 2.1278 0.0004 32 1 5.9976 -1.0125 0.9366 33 1 5.9360 -0.8426 -0.8341 34 1 7.7915 -2.3408 -0.1319 35 1 6.5760 -3.2200 -1.0912 36 1 6.7827 -3.1842 1.9554 37 1 7.7500 -5.0896 -0.0363 38 1 6.7312 -4.3627 3.3450 39 1 7.4075 -5.6612 5.3013 40 1 6.4157 -7.4392 7.1755 41 1 9.7199 -8.2576 2.7519 42 1 9.0219 -6.9512 0.8085 43 1 4.8800 -4.6835 0.0952 44 1 4.9287 -4.8109 1.8706 45 1 4.3838 -2.4049 2.0654 46 1 3.1372 -3.2576 1.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097139341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:26 Heat of formation + Delta-G solvation = 74.357571 kcal Electronic energy + Delta-G solvation = -26514.309638 eV Core-core repulsion = 22916.063072 eV Total energy + Delta-G solvation = -3598.246566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.50533 -39.17019 -37.77357 -35.49924 -33.49305 -32.07381 -31.19920 -30.57276 -29.46539 -28.28789 -27.74804 -25.24566 -24.07083 -23.52572 -22.55471 -21.24053 -20.29027 -19.68303 -19.50756 -18.37998 -17.22500 -16.72279 -16.17844 -15.64145 -15.44667 -15.04937 -14.88873 -14.49386 -14.16650 -13.96377 -13.86870 -13.56913 -13.16288 -12.97722 -12.80017 -12.69086 -12.58580 -12.40329 -12.03674 -11.81891 -11.77531 -11.52393 -11.41723 -11.35278 -11.04954 -10.86488 -10.72658 -10.53371 -10.44993 -10.26880 -9.72441 -9.68670 -9.33625 -9.29260 -9.24258 -8.55337 -8.27087 -7.50858 -6.65721 -6.41000 -4.04478 0.56138 1.02579 1.52423 2.56688 2.90356 3.04135 3.08712 3.14692 3.17989 3.34227 4.04520 4.10748 4.28418 4.58527 4.71531 4.79839 4.86567 4.93216 5.03161 5.07474 5.12123 5.32768 5.34801 5.38725 5.42804 5.50142 5.54191 5.67533 5.77027 5.82495 5.91396 6.00280 6.16016 6.23701 6.28933 6.37125 6.48267 6.58122 6.91641 6.92595 7.18989 7.34673 7.54178 7.64698 7.67634 7.82610 8.14042 8.27594 8.47656 8.68293 8.78677 9.05113 9.13883 10.36268 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.002169 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.239893 B =12904.729519 C =13844.679849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.094 3.906 3 C -0.287 4.287 4 S 0.080 5.920 5 C 0.247 3.753 6 N -0.439 5.439 7 C 0.049 3.951 8 C -0.120 4.120 9 C 0.162 3.838 10 N -0.754 5.754 11 C 0.092 3.908 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.074 3.926 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.807 5.807 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.187 4.187 24 C -0.158 4.158 25 C -0.134 4.134 26 C 0.067 3.933 27 N -0.502 5.502 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.173 0.827 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.384 0.616 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.276 0.724 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 16.821 -11.743 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C -0.427 4.427 4 S 0.331 5.669 5 C -0.123 4.123 6 N -0.159 5.159 7 C -0.079 4.079 8 C -0.158 4.158 9 C 0.055 3.945 10 N -0.388 5.388 11 C -0.004 4.004 12 C -0.186 4.186 13 C -0.145 4.145 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.434 5.434 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.207 4.207 24 C -0.180 4.180 25 C -0.174 4.174 26 C -0.060 4.060 27 N -0.222 5.222 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.191 0.809 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.217 0.783 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.954 16.622 -11.888 21.929 hybrid contribution -0.521 0.037 0.962 1.095 sum -8.475 16.659 -10.926 21.650 Atomic orbital electron populations 1.20368 0.87128 1.03315 1.03012 1.20088 0.97956 0.86115 0.99672 1.26417 0.94346 1.03676 1.18247 1.84118 1.08456 1.03076 1.71235 1.25392 0.92607 0.93495 1.00781 1.58315 1.02380 1.12591 1.42653 1.22388 0.85086 0.98028 1.02431 1.21841 0.98472 0.95291 1.00209 1.20620 0.89155 0.87151 0.97606 1.43852 1.56067 1.32099 1.06814 1.17315 1.01156 0.95303 0.86670 1.20095 1.04980 1.01577 0.91936 1.20933 1.01060 0.95147 0.97328 1.17505 0.92070 0.91620 0.91663 1.19378 1.06926 1.26603 0.96863 0.90942 1.25795 0.94050 0.93724 1.00515 1.69853 1.05547 1.37823 1.30201 0.86408 0.79612 0.79496 0.81686 1.19560 1.20584 1.18860 1.20544 1.06628 1.01038 0.92491 1.19811 1.03056 0.97843 0.97287 1.22229 0.94850 0.96321 1.03992 1.22330 1.02170 0.92888 0.88655 1.66289 1.02986 1.31338 1.21587 0.90552 0.90728 0.90518 0.80918 0.92282 0.89400 0.89917 0.90365 0.90929 0.78288 0.89444 0.86443 0.91330 0.89093 0.89604 0.90793 0.89663 0.93243 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.00 0.37 -0.23 16 2 C 0.09 1.01 6.74 -84.18 -0.57 0.45 16 3 C -0.29 -2.69 11.10 29.02 0.32 -2.37 16 4 S 0.08 0.79 21.16 -107.50 -2.27 -1.49 16 5 C 0.25 3.04 6.81 -87.68 -0.60 2.44 16 6 N -0.44 -5.25 4.72 -175.42 -0.83 -6.08 16 7 C 0.05 0.48 4.50 -3.83 -0.02 0.47 16 8 C -0.12 -1.26 5.57 -26.65 -0.15 -1.40 16 9 C 0.16 2.21 2.20 -67.81 -0.15 2.06 16 10 N -0.75 -12.18 5.22 -51.91 -0.27 -12.45 16 11 C 0.09 1.92 6.65 -83.69 -0.56 1.36 16 12 C -0.16 -3.70 8.82 -39.77 -0.35 -4.05 16 13 C -0.12 -3.21 8.64 -39.27 -0.34 -3.55 16 14 C 0.07 1.99 5.57 -106.79 -0.60 1.39 16 15 C -0.47 -12.60 9.03 -37.87 -0.34 -12.94 16 16 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 17 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 18 N -0.81 -21.30 10.96 55.54 0.61 -20.69 16 19 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.19 -4.57 9.74 -39.26 -0.38 -4.95 16 24 C -0.16 -3.46 9.82 -39.77 -0.39 -3.85 16 25 C -0.13 -1.83 5.63 -26.65 -0.15 -1.98 16 26 C 0.07 0.84 5.38 -3.84 -0.02 0.82 16 27 N -0.50 -6.64 10.19 -11.36 -0.12 -6.75 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.06 0.57 8.01 -51.93 -0.42 0.15 16 33 H 0.09 0.76 7.46 -51.93 -0.39 0.37 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 1.08 6.43 -51.93 -0.33 0.75 16 37 H 0.38 5.56 8.60 -40.82 -0.35 5.21 16 38 H 0.09 1.79 6.06 -52.48 -0.32 1.47 16 39 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.35 7.74 -51.93 -0.40 0.95 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.25 7.81 -51.93 -0.41 0.84 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -29.20 380.42 -12.89 -42.09 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.71 Total: 10.00 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -4.00 Total: -24.52 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.61 Total: -45.98 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.27 Total: -1.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.20 -12.89 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097139341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.451 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds