Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38422 * 122.54425 * 2 1 4 4 C 1.33387 * 114.92162 * 179.97438 * 3 2 1 5 5 S 1.75884 * 109.59536 * 359.75597 * 4 3 2 6 6 C 1.33393 * 122.53262 * 179.97438 * 2 1 3 7 7 C 1.50696 * 125.20631 * 359.97438 * 6 2 1 8 8 N 1.46906 * 109.47351 * 89.99854 * 7 6 2 9 9 C 1.46901 * 110.99793 * 293.95574 * 8 7 6 10 10 C 1.38108 * 110.99812 * 169.99883 * 8 7 6 11 11 N 1.32860 * 120.81388 * 0.02562 * 10 8 7 12 12 C 1.32121 * 121.19017 * 179.97438 * 11 10 8 13 13 N 1.31513 * 122.64804 * 359.97438 * 12 11 10 14 14 C 1.33194 * 120.68278 * 0.02562 * 13 12 11 15 15 C 1.40821 * 120.80810 * 179.71863 * 10 8 7 16 16 C 1.41172 * 134.69906 * 0.68483 * 15 10 8 17 17 N 1.30241 * 108.46698 * 179.54523 * 16 15 10 18 18 N 1.36311 * 134.61761 * 179.97438 * 14 13 12 19 19 C 1.46499 * 125.87110 * 359.97438 * 18 14 13 20 20 C 1.50704 * 109.47323 * 89.99920 * 19 18 14 21 21 H 1.07997 * 119.99865 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00056 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99964 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99882 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47155 * 89.99821 * 24 22 20 26 26 H 1.48503 * 109.47078 * 209.99560 * 24 22 20 27 27 H 1.48499 * 109.47174 * 329.99595 * 24 22 20 28 28 H 1.09002 * 109.46856 * 270.02147 * 1 2 3 29 29 H 1.09008 * 109.46811 * 30.01967 * 1 2 3 30 30 H 1.08994 * 109.47772 * 150.02058 * 1 2 3 31 31 H 1.07999 * 122.53541 * 359.96414 * 3 2 1 32 32 H 1.08002 * 125.20137 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47055 * 329.99910 * 7 6 2 34 34 H 1.09001 * 109.47156 * 209.99678 * 7 6 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 36 36 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 37 37 H 1.09004 * 109.46970 * 179.97438 * 9 8 7 38 38 H 1.07996 * 118.67947 * 180.02562 * 12 11 10 39 39 H 1.08001 * 125.76304 * 359.31778 * 16 15 10 40 40 H 1.09003 * 109.47112 * 209.99566 * 19 18 14 41 41 H 1.08998 * 109.47512 * 330.00101 * 19 18 14 42 42 H 0.97002 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9899 0.0005 5 16 3.9386 -0.7306 0.0081 6 6 2.2244 -1.1246 0.0005 7 6 1.6535 -2.5193 0.0017 8 7 1.4674 -2.9734 -1.3830 9 6 0.4396 -2.1756 -2.0650 10 6 1.1586 -4.3189 -1.4252 11 7 1.0628 -5.0306 -0.3074 12 6 0.7674 -6.3180 -0.3391 13 7 0.5516 -6.9689 -1.4613 14 6 0.6245 -6.3432 -2.6348 15 6 0.9313 -4.9685 -2.6538 16 6 0.9472 -4.5671 -4.0071 17 7 0.6670 -5.6013 -4.7475 18 7 0.4607 -6.7224 -3.9338 19 6 0.1261 -8.0708 -4.3988 20 6 -1.3717 -8.2184 -4.4757 21 1 -2.0105 -7.3905 -4.2057 22 6 -1.9265 -9.4101 -4.8919 23 7 -3.2336 -9.5391 -4.9585 24 14 -0.8216 -10.8418 -5.3596 25 1 -0.5529 -11.6726 -4.1585 26 1 -1.4942 -11.6691 -6.3933 27 1 0.4606 -10.3219 -5.8989 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.7966 2.1463 -0.0006 32 1 4.3079 1.7821 0.0002 33 1 0.6924 -2.5180 0.5159 34 1 2.3397 -3.1923 0.5157 35 1 0.7419 -1.1285 -2.0783 36 1 -0.5076 -2.2737 -1.5347 37 1 0.3223 -2.5326 -3.0883 38 1 0.6995 -6.8573 0.5941 39 1 1.1531 -3.5699 -4.3674 40 1 0.5582 -8.2322 -5.3864 41 1 0.5282 -8.8058 -3.7016 42 1 -3.6239 -10.3774 -5.2516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = 174.903062 kcal Electronic energy + Delta-G solvation = -26786.053102 eV Core-core repulsion = 23088.626173 eV Total energy + Delta-G solvation = -3697.426929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74761 -39.57911 -38.50909 -37.12733 -33.89331 -32.73765 -31.70140 -31.48527 -30.04084 -29.41693 -27.82947 -26.60345 -25.03730 -23.64457 -23.14443 -22.60728 -21.84607 -20.06048 -18.63984 -17.89937 -17.48101 -17.20732 -17.16500 -16.34652 -15.85482 -15.60457 -14.99407 -14.77493 -14.56212 -14.24518 -14.07284 -13.82682 -13.52502 -13.44781 -12.87541 -12.76569 -12.61064 -12.48874 -12.41798 -12.18859 -12.06990 -11.81341 -11.44024 -11.33064 -11.14434 -10.99992 -10.83762 -10.73922 -10.35016 -10.23774 -9.73779 -9.43370 -9.03219 -8.78903 -8.77472 -8.54268 -8.42002 -7.96565 -6.26455 -4.29566 0.71782 0.93645 1.43544 1.64781 1.82149 2.39359 2.74752 2.86135 3.18173 3.23977 3.25952 3.40240 4.11413 4.22578 4.30699 4.51827 4.55015 4.66071 4.76915 4.88552 4.92630 5.04432 5.12211 5.15216 5.19386 5.21280 5.33521 5.38421 5.39779 5.48262 5.59149 5.64273 5.74794 5.81777 6.13529 6.15804 6.22192 6.37287 6.42290 6.45294 6.77777 6.96563 7.13785 7.26170 7.54721 7.98158 8.25317 8.53620 8.74572 9.28084 10.86158 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.002462 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.821241 B =11368.876364 C =11475.485290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.216 4.216 5 S 0.118 5.882 6 C -0.176 4.176 7 C 0.135 3.865 8 N -0.468 5.468 9 C 0.018 3.982 10 C 0.433 3.567 11 N -0.598 5.598 12 C 0.353 3.647 13 N -0.535 5.535 14 C 0.356 3.644 15 C -0.294 4.294 16 C 0.074 3.926 17 N -0.232 5.232 18 N -0.331 5.331 19 C 0.236 3.764 20 C -0.540 4.540 21 H 0.078 0.922 22 C 0.081 3.919 23 N -0.887 5.887 24 Si 0.874 3.126 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.199 0.801 39 H 0.191 0.809 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.890 20.752 11.407 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.162 4.162 4 C -0.352 4.352 5 S 0.383 5.617 6 C -0.294 4.294 7 C 0.008 3.992 8 N -0.184 5.184 9 C -0.128 4.128 10 C 0.183 3.817 11 N -0.323 5.323 12 C 0.060 3.940 13 N -0.257 5.257 14 C 0.107 3.893 15 C -0.310 4.310 16 C -0.121 4.121 17 N -0.047 5.047 18 N -0.117 5.117 19 C 0.118 3.882 20 C -0.578 4.578 21 H 0.096 0.904 22 C -0.124 4.124 23 N -0.523 5.523 24 Si 0.700 3.300 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.180 0.820 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.251 18.677 10.541 25.210 hybrid contribution -1.249 0.680 0.144 1.429 sum 12.002 19.357 10.685 25.158 Atomic orbital electron populations 1.20890 0.89936 1.03493 1.02733 1.18870 0.97339 0.91608 1.03578 1.20006 0.92853 0.99138 1.04207 1.25621 0.99794 0.99442 1.10384 1.84392 1.05590 0.99704 1.71972 1.24183 0.96063 0.98299 1.10823 1.20427 1.01584 0.89742 0.87487 1.58579 1.42534 0.99837 1.17461 1.22930 0.91337 0.98569 0.99917 1.19396 0.85046 0.89739 0.87499 1.68336 1.24959 1.10292 1.28760 1.24532 0.88191 0.86143 0.95183 1.67523 1.21722 1.40188 0.96231 1.18982 0.93487 0.89047 0.87759 1.19628 1.19962 0.96464 0.94988 1.23609 1.00364 0.98803 0.89320 1.76988 1.16168 0.92663 1.18867 1.49016 1.53356 1.09706 0.99640 1.20124 0.98544 0.73041 0.96511 1.21082 0.88382 1.01010 1.47311 0.90400 1.24765 0.95099 0.98108 0.94402 1.69865 1.09929 1.26489 1.46062 0.86878 0.81088 0.82824 0.79197 1.19476 1.20462 1.18834 0.91160 0.91294 0.90630 0.84471 0.82040 0.90839 0.87971 0.89111 0.93401 0.89582 0.78499 0.79222 0.92889 0.93045 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 8.94 36.01 0.32 -0.47 16 2 C -0.10 -0.86 4.94 -106.25 -0.52 -1.39 16 3 C -0.13 -1.02 9.98 -41.21 -0.41 -1.43 16 4 C -0.22 -1.67 11.23 29.04 0.33 -1.34 16 5 S 0.12 1.07 23.33 -107.50 -2.51 -1.43 16 6 C -0.18 -1.70 5.43 -36.00 -0.20 -1.90 16 7 C 0.14 1.45 4.41 -4.97 -0.02 1.43 16 8 N -0.47 -5.67 4.77 -182.03 -0.87 -6.54 16 9 C 0.02 0.18 7.68 60.07 0.46 0.64 16 10 C 0.43 6.61 6.43 -154.85 -0.99 5.61 16 11 N -0.60 -9.09 8.76 -13.62 -0.12 -9.20 16 12 C 0.35 5.63 12.24 -92.11 -1.13 4.51 16 13 N -0.53 -10.78 10.47 -13.97 -0.15 -10.92 16 14 C 0.36 7.56 8.04 -156.24 -1.26 6.30 16 15 C -0.29 -5.23 5.73 -106.81 -0.61 -5.84 16 16 C 0.07 1.24 10.73 -17.11 -0.18 1.06 16 17 N -0.23 -4.80 12.45 30.80 0.38 -4.41 16 18 N -0.33 -7.61 3.63 -61.64 -0.22 -7.84 16 19 C 0.24 5.83 5.26 -5.19 -0.03 5.81 16 20 C -0.54 -15.43 9.94 -34.44 -0.34 -15.77 16 21 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 22 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 23 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 24 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.40 8.13 -51.92 -0.42 -0.02 16 30 H 0.08 0.57 3.74 -51.93 -0.19 0.37 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.07 0.77 7.30 -51.93 -0.38 0.40 16 34 H 0.10 1.18 7.54 -51.93 -0.39 0.79 16 35 H 0.09 0.79 5.65 -51.93 -0.29 0.49 16 36 H 0.05 0.48 6.81 -51.93 -0.35 0.12 16 37 H 0.09 0.88 5.04 -51.93 -0.26 0.62 16 38 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.19 2.30 6.86 -52.49 -0.36 1.94 16 40 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 41 H 0.05 1.25 7.57 -51.93 -0.39 0.85 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -33.09 356.55 -11.39 -44.48 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.70 Total: 1.03 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -4.69 Total: -0.58 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.20 Total: -64.83 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.09 -11.39 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.386 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds