Wall clock time and date at job start Tue Mar 31 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46835 * 2 1 4 4 C 1.53000 * 109.47036 * 240.00061 * 2 1 3 5 5 C 1.53000 * 109.47443 * 174.99966 * 4 2 1 6 6 C 1.50695 * 109.47313 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79319 * 90.00014 * 6 5 4 8 8 C 1.41376 * 106.84242 * 179.73499 * 7 6 5 9 9 C 1.34516 * 106.84089 * 0.02562 * 8 7 6 10 10 O 1.34298 * 108.42070 * 0.02562 * 9 8 7 11 11 N 1.46500 * 109.47275 * 120.00190 * 2 1 3 12 12 C 1.38106 * 119.99538 * 275.00111 * 11 2 1 13 13 N 1.32855 * 120.81578 * 359.97438 * 12 11 2 14 14 C 1.32125 * 121.19144 * 179.97438 * 13 12 11 15 15 N 1.31504 * 122.64846 * 0.02562 * 14 13 12 16 16 C 1.33194 * 120.68441 * 359.97438 * 15 14 13 17 17 C 1.40820 * 120.80843 * 179.72053 * 12 11 2 18 18 C 1.41166 * 134.69907 * 0.02562 * 17 12 11 19 19 N 1.30243 * 108.47235 * 180.02562 * 18 17 12 20 20 N 1.36316 * 134.62039 * 180.02562 * 16 15 14 21 21 C 1.46498 * 125.87409 * 359.96943 * 20 16 15 22 22 C 1.50704 * 109.46987 * 90.00325 * 21 20 16 23 23 H 1.08001 * 119.99819 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99904 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99656 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47060 * 90.00315 * 26 24 22 28 28 H 1.48498 * 109.46839 * 209.99392 * 26 24 22 29 29 H 1.48490 * 109.47453 * 329.99800 * 26 24 22 30 30 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46821 * 299.99678 * 1 2 3 32 32 H 1.08996 * 109.47280 * 60.00148 * 1 2 3 33 33 H 1.09004 * 109.47127 * 54.99927 * 4 2 1 34 34 H 1.09008 * 109.47104 * 295.00155 * 4 2 1 35 35 H 1.09004 * 109.46990 * 59.99878 * 5 4 2 36 36 H 1.09003 * 109.46686 * 300.00019 * 5 4 2 37 37 H 1.07995 * 126.57546 * 359.70154 * 7 6 5 38 38 H 1.08003 * 126.57866 * 179.97438 * 8 7 6 39 39 H 1.08001 * 125.78815 * 179.97438 * 9 8 7 40 40 H 0.96999 * 119.99912 * 94.99461 * 11 2 1 41 41 H 1.08007 * 118.67685 * 180.02562 * 14 13 12 42 42 H 1.08006 * 125.76482 * 0.02737 * 18 17 12 43 43 H 1.09000 * 109.47668 * 210.00449 * 21 20 16 44 44 H 1.09009 * 109.47111 * 330.00682 * 21 20 16 45 45 H 0.96995 * 119.99630 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.2396 -0.7680 -3.7576 8 6 4.7288 -1.7859 -4.6081 9 6 4.8255 -2.9024 -3.8641 10 8 4.4225 -2.6164 -2.6153 11 7 2.0184 -0.6906 1.1961 12 6 2.1503 -0.0016 2.3858 13 7 1.8395 1.2877 2.4636 14 6 1.9623 1.9539 3.5979 15 7 2.3938 1.3937 4.7066 16 6 2.7308 0.1053 4.7305 17 6 2.6125 -0.6499 3.5473 18 6 3.0237 -1.9652 3.8534 19 7 3.3577 -2.0109 5.1114 20 7 3.1972 -0.7448 5.6887 21 6 3.4705 -0.3972 7.0854 22 6 2.2293 -0.6203 7.9106 23 1 1.3271 -0.9841 7.4414 24 6 2.2453 -0.3589 9.2643 25 7 3.3438 0.0846 9.8354 26 14 0.7066 -0.6347 10.2869 27 1 0.7010 -2.0254 10.8076 28 1 0.6907 0.3197 11.4244 29 1 -0.4950 -0.4177 9.4418 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7716 -1.2056 35 1 3.9995 -1.0729 -0.4261 36 1 3.8532 0.4370 -1.3575 37 1 4.0418 0.2582 -4.0297 38 1 4.9765 -1.6864 -5.6546 39 1 5.1682 -3.8656 -4.2122 40 1 2.2491 -1.6318 1.1525 41 1 1.6976 3.0009 3.6153 42 1 3.0558 -2.7937 3.1613 43 1 4.2768 -1.0248 7.4650 44 1 3.7651 0.6504 7.1482 45 1 3.3550 0.2682 10.7878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:41 Heat of formation + Delta-G solvation = 121.025938 kcal Electronic energy + Delta-G solvation = -28303.430318 eV Core-core repulsion = 24324.058803 eV Total energy + Delta-G solvation = -3979.371515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.84361 -41.36738 -38.72687 -37.52070 -34.56961 -33.65936 -33.18809 -32.21997 -31.27200 -31.01703 -28.84296 -28.26238 -27.16701 -24.44801 -23.89033 -23.44094 -22.48699 -22.04452 -21.02827 -20.62711 -20.10549 -17.92489 -17.62582 -17.38332 -16.65675 -16.45985 -16.20777 -15.64194 -15.19826 -14.97726 -14.75623 -14.40768 -13.99812 -13.86965 -13.71194 -13.58596 -13.33837 -13.12771 -13.07226 -12.82572 -12.52267 -12.25410 -12.15090 -11.90808 -11.64724 -11.35164 -11.18122 -11.10223 -10.97741 -10.88307 -10.72801 -10.27390 -10.21758 -10.06052 -9.82389 -9.24461 -8.74034 -8.64939 -8.58171 -8.20407 -7.61360 -6.20714 -4.27038 1.33438 1.43586 1.96456 2.31723 2.70383 2.95655 3.05358 3.15609 3.25213 3.30741 3.36909 4.20752 4.32263 4.41210 4.54177 4.59381 4.67293 4.69732 4.75755 4.77371 4.86691 5.01246 5.13272 5.15321 5.21365 5.26485 5.32883 5.41547 5.50776 5.52850 5.64221 5.65886 5.70884 5.73840 5.85317 5.91555 6.12351 6.20634 6.37081 6.71155 6.84937 6.95569 7.04784 7.12472 7.28087 7.52556 7.73763 7.92023 7.94670 8.25214 8.73412 8.85113 9.37843 10.87501 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.002171 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.797213 B =12894.665502 C =13490.641823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.096 0.904 4 C -0.124 4.124 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.215 4.215 8 C -0.214 4.214 9 C -0.046 4.046 10 O -0.175 6.175 11 N -0.703 5.703 12 C 0.511 3.489 13 N -0.617 5.617 14 C 0.366 3.634 15 N -0.555 5.555 16 C 0.363 3.637 17 C -0.338 4.338 18 C 0.068 3.932 19 N -0.244 5.244 20 N -0.332 5.332 21 C 0.264 3.736 22 C -0.532 4.532 23 H 0.061 0.939 24 C 0.066 3.934 25 N -0.891 5.891 26 Si 0.907 3.093 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.408 0.592 41 H 0.194 0.806 42 H 0.181 0.819 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -1.748 -28.544 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.114 0.886 4 C -0.162 4.162 5 C -0.079 4.079 6 C -0.056 4.056 7 C -0.234 4.234 8 C -0.233 4.233 9 C -0.114 4.114 10 O -0.072 6.072 11 N -0.337 5.337 12 C 0.259 3.741 13 N -0.348 5.348 14 C 0.072 3.928 15 N -0.280 5.280 16 C 0.115 3.885 17 C -0.356 4.356 18 C -0.127 4.127 19 N -0.059 5.059 20 N -0.119 5.119 21 C 0.147 3.853 22 C -0.571 4.571 23 H 0.079 0.921 24 C -0.137 4.137 25 N -0.529 5.529 26 Si 0.734 3.266 27 H -0.204 1.204 28 H -0.208 1.208 29 H -0.198 1.198 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.218 0.782 40 H 0.244 0.756 41 H 0.210 0.790 42 H 0.198 0.802 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.269 -1.602 -26.934 26.983 hybrid contribution -0.723 -0.813 -0.277 1.123 sum -0.992 -2.416 -27.210 27.335 Atomic orbital electron populations 1.22177 0.95230 1.01993 1.02702 1.20934 0.94039 0.97593 0.82595 0.88557 1.21956 0.94029 1.01974 0.98237 1.20194 0.95628 0.99597 0.92462 1.22533 1.03152 0.81993 0.97879 1.21609 1.07700 1.01120 0.92945 1.21841 1.06942 0.93296 1.01263 1.24027 1.04628 1.00829 0.81898 1.84034 1.64299 1.27343 1.31476 1.44485 1.70244 1.12256 1.06693 1.17894 0.84313 0.88017 0.83920 1.67936 1.30348 1.06445 1.30057 1.24401 0.88168 0.99138 0.81110 1.67508 1.20771 1.09294 1.30403 1.18945 0.92588 0.89301 0.87668 1.19622 1.21968 0.97510 0.96466 1.23361 1.00082 0.95414 0.93842 1.76941 1.19253 1.01381 1.08372 1.49461 1.49331 1.02631 1.10454 1.19789 0.98271 0.97740 0.69532 1.21246 0.96960 1.45902 0.93005 0.92082 1.24902 0.96939 0.94507 0.97392 1.69918 1.26932 1.44157 1.11901 0.86339 0.82598 0.78114 0.79510 1.20367 1.20809 1.19776 0.92806 0.91482 0.91870 0.89770 0.90964 0.89686 0.88565 0.83533 0.83598 0.78245 0.75601 0.78962 0.80165 0.92845 0.92245 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.50 37.16 0.35 -0.99 16 2 C 0.15 1.24 2.60 -67.93 -0.18 1.07 16 3 H 0.10 0.88 7.57 -51.93 -0.39 0.49 16 4 C -0.12 -0.78 4.74 -26.73 -0.13 -0.90 16 5 C -0.04 -0.30 5.64 -27.89 -0.16 -0.45 16 6 C -0.01 -0.05 6.57 -35.63 -0.23 -0.28 16 7 C -0.21 -1.75 10.81 -39.71 -0.43 -2.18 16 8 C -0.21 -1.62 10.91 -39.70 -0.43 -2.05 16 9 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 10 O -0.18 -1.67 10.65 5.72 0.06 -1.61 16 11 N -0.70 -7.14 4.65 -53.60 -0.25 -7.38 16 12 C 0.51 7.49 7.53 -154.86 -1.17 6.33 16 13 N -0.62 -9.31 9.34 -13.62 -0.13 -9.44 16 14 C 0.37 6.00 12.24 -92.12 -1.13 4.87 16 15 N -0.55 -11.60 10.47 -13.97 -0.15 -11.75 16 16 C 0.36 7.97 8.04 -156.23 -1.26 6.71 16 17 C -0.34 -6.02 6.14 -106.81 -0.66 -6.68 16 18 C 0.07 1.15 11.87 -17.11 -0.20 0.94 16 19 N -0.24 -5.23 12.45 30.80 0.38 -4.84 16 20 N -0.33 -7.97 3.63 -61.64 -0.22 -8.19 16 21 C 0.26 7.07 6.19 -5.19 -0.03 7.04 16 22 C -0.53 -15.28 9.39 -34.44 -0.32 -15.61 16 23 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 26 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.41 3.43 8.47 -40.82 -0.35 3.08 16 41 H 0.19 2.39 8.06 -52.48 -0.42 1.96 16 42 H 0.18 2.08 8.06 -52.48 -0.42 1.66 16 43 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -34.11 390.39 -10.60 -44.71 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.18 Total: 1.38 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -5.71 Total: -0.41 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 0.37 Total: -66.76 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: 0.06 Total: -1.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.11 -10.60 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.736 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds