Wall clock time and date at job start Tue Mar 31 2020 04:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46835 * 2 1 4 4 C 1.53000 * 109.47036 * 240.00061 * 2 1 3 5 5 C 1.53000 * 109.47443 * 174.99966 * 4 2 1 6 6 C 1.50695 * 109.47313 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79319 * 90.00014 * 6 5 4 8 8 C 1.41376 * 106.84242 * 179.73499 * 7 6 5 9 9 C 1.34516 * 106.84089 * 0.02562 * 8 7 6 10 10 O 1.34298 * 108.42070 * 0.02562 * 9 8 7 11 11 N 1.46500 * 109.47275 * 120.00190 * 2 1 3 12 12 C 1.38106 * 119.99538 * 275.00111 * 11 2 1 13 13 N 1.32855 * 120.81578 * 359.97438 * 12 11 2 14 14 C 1.32125 * 121.19144 * 179.97438 * 13 12 11 15 15 N 1.31504 * 122.64846 * 0.02562 * 14 13 12 16 16 C 1.33194 * 120.68441 * 359.97438 * 15 14 13 17 17 C 1.40820 * 120.80843 * 179.72053 * 12 11 2 18 18 C 1.41166 * 134.69907 * 0.02562 * 17 12 11 19 19 N 1.30243 * 108.47235 * 180.02562 * 18 17 12 20 20 N 1.36316 * 134.62039 * 180.02562 * 16 15 14 21 21 C 1.46498 * 125.87409 * 359.96943 * 20 16 15 22 22 C 1.50704 * 109.46987 * 90.00325 * 21 20 16 23 23 H 1.08001 * 119.99819 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99904 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99656 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47060 * 90.00315 * 26 24 22 28 28 H 1.48498 * 109.46839 * 209.99392 * 26 24 22 29 29 H 1.48490 * 109.47453 * 329.99800 * 26 24 22 30 30 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46821 * 299.99678 * 1 2 3 32 32 H 1.08996 * 109.47280 * 60.00148 * 1 2 3 33 33 H 1.09004 * 109.47127 * 54.99927 * 4 2 1 34 34 H 1.09008 * 109.47104 * 295.00155 * 4 2 1 35 35 H 1.09004 * 109.46990 * 59.99878 * 5 4 2 36 36 H 1.09003 * 109.46686 * 300.00019 * 5 4 2 37 37 H 1.07995 * 126.57546 * 359.70154 * 7 6 5 38 38 H 1.08003 * 126.57866 * 179.97438 * 8 7 6 39 39 H 1.08001 * 125.78815 * 179.97438 * 9 8 7 40 40 H 0.96999 * 119.99912 * 94.99461 * 11 2 1 41 41 H 1.08007 * 118.67685 * 180.02562 * 14 13 12 42 42 H 1.08006 * 125.76482 * 0.02737 * 18 17 12 43 43 H 1.09000 * 109.47668 * 210.00449 * 21 20 16 44 44 H 1.09009 * 109.47111 * 330.00682 * 21 20 16 45 45 H 0.96995 * 119.99630 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.2396 -0.7680 -3.7576 8 6 4.7288 -1.7859 -4.6081 9 6 4.8255 -2.9024 -3.8641 10 8 4.4225 -2.6164 -2.6153 11 7 2.0184 -0.6906 1.1961 12 6 2.1503 -0.0016 2.3858 13 7 1.8395 1.2877 2.4636 14 6 1.9623 1.9539 3.5979 15 7 2.3938 1.3937 4.7066 16 6 2.7308 0.1053 4.7305 17 6 2.6125 -0.6499 3.5473 18 6 3.0237 -1.9652 3.8534 19 7 3.3577 -2.0109 5.1114 20 7 3.1972 -0.7448 5.6887 21 6 3.4705 -0.3972 7.0854 22 6 2.2293 -0.6203 7.9106 23 1 1.3271 -0.9841 7.4414 24 6 2.2453 -0.3589 9.2643 25 7 3.3438 0.0846 9.8354 26 14 0.7066 -0.6347 10.2869 27 1 0.7010 -2.0254 10.8076 28 1 0.6907 0.3197 11.4244 29 1 -0.4950 -0.4177 9.4418 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7716 -1.2056 35 1 3.9995 -1.0729 -0.4261 36 1 3.8532 0.4370 -1.3575 37 1 4.0418 0.2582 -4.0297 38 1 4.9765 -1.6864 -5.6546 39 1 5.1682 -3.8656 -4.2122 40 1 2.2491 -1.6318 1.1525 41 1 1.6976 3.0009 3.6153 42 1 3.0558 -2.7937 3.1613 43 1 4.2768 -1.0248 7.4650 44 1 3.7651 0.6504 7.1482 45 1 3.3550 0.2682 10.7878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:40 Heat of formation + Delta-G solvation = 101.488279 kcal Electronic energy + Delta-G solvation = -28304.277534 eV Core-core repulsion = 24324.058803 eV Total energy + Delta-G solvation = -3980.218731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.41546 -42.78835 -39.97426 -38.53028 -35.89209 -35.26274 -33.95087 -33.40692 -32.82369 -32.06648 -30.06446 -29.09462 -28.82503 -25.56999 -25.32830 -24.73157 -23.85636 -22.61125 -21.91774 -21.50813 -21.18496 -19.34300 -18.81582 -18.59130 -18.16228 -17.71617 -17.00976 -16.71281 -16.66094 -16.26006 -15.77757 -15.57839 -15.13095 -15.03698 -14.88046 -14.67735 -14.47528 -14.18975 -13.82600 -13.67886 -13.66483 -13.45115 -13.18730 -13.04426 -12.88155 -12.75031 -12.70874 -12.37456 -12.30011 -12.19390 -11.87436 -11.80610 -11.68482 -11.44708 -10.79455 -10.75894 -10.58056 -10.01554 -9.75089 -9.30729 -8.94255 -8.35397 -6.52415 0.00453 0.56778 0.86798 1.32731 1.35725 1.40947 1.50166 1.65788 1.76307 2.08096 2.18711 2.31549 2.94050 3.05309 3.31023 3.42954 3.62695 3.72064 3.80489 4.03005 4.10935 4.13003 4.16344 4.22182 4.34803 4.45558 4.57729 4.65954 4.72570 4.82919 4.87342 4.88973 4.94043 5.01265 5.05816 5.13600 5.21752 5.31364 5.34382 5.45256 5.48095 5.58530 5.68068 5.77991 5.80009 6.03203 6.18520 6.28339 6.53388 6.61678 6.82551 7.16967 7.49788 8.72125 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.002171 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.797213 B =12894.665502 C =13490.641823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.092 0.908 4 C -0.110 4.110 5 C -0.039 4.039 6 C -0.022 4.022 7 C -0.225 4.225 8 C -0.229 4.229 9 C -0.052 4.052 10 O -0.195 6.195 11 N -0.679 5.679 12 C 0.521 3.479 13 N -0.610 5.610 14 C 0.375 3.625 15 N -0.607 5.607 16 C 0.336 3.664 17 C -0.346 4.346 18 C 0.099 3.901 19 N -0.292 5.292 20 N -0.367 5.367 21 C 0.285 3.715 22 C -0.551 4.551 23 H 0.045 0.955 24 C 0.018 3.982 25 N -0.919 5.919 26 Si 0.976 3.024 27 H -0.267 1.267 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.230 0.770 40 H 0.419 0.581 41 H 0.229 0.771 42 H 0.237 0.763 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -2.352 -31.549 31.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.110 0.890 4 C -0.148 4.148 5 C -0.076 4.076 6 C -0.072 4.072 7 C -0.244 4.244 8 C -0.247 4.247 9 C -0.119 4.119 10 O -0.092 6.092 11 N -0.311 5.311 12 C 0.267 3.733 13 N -0.341 5.341 14 C 0.083 3.917 15 N -0.335 5.335 16 C 0.089 3.911 17 C -0.364 4.364 18 C -0.095 4.095 19 N -0.107 5.107 20 N -0.154 5.154 21 C 0.166 3.834 22 C -0.589 4.589 23 H 0.063 0.937 24 C -0.183 4.183 25 N -0.557 5.557 26 Si 0.799 3.201 27 H -0.192 1.192 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.246 0.754 40 H 0.258 0.742 41 H 0.245 0.755 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.750 -2.234 -30.029 30.163 hybrid contribution -0.264 -0.588 0.328 0.724 sum -2.014 -2.823 -29.701 29.902 Atomic orbital electron populations 1.22137 0.94747 1.02302 1.02532 1.21096 0.94240 0.97473 0.82183 0.89017 1.21851 0.93363 1.02118 0.97476 1.20196 0.96067 0.99665 0.91680 1.22774 1.03908 0.81997 0.98489 1.21916 1.07479 1.01926 0.93069 1.22177 1.07044 0.93290 1.02235 1.24696 1.03859 1.02126 0.81207 1.84022 1.64777 1.27822 1.32541 1.44655 1.67995 1.12754 1.05744 1.17986 0.82996 0.87872 0.84451 1.68100 1.30393 1.06452 1.29122 1.25165 0.85822 1.00427 0.80330 1.67518 1.23582 1.09602 1.32764 1.19376 0.92916 0.90237 0.88571 1.19761 1.22804 0.97554 0.96275 1.24240 0.96059 0.96364 0.92887 1.76886 1.22541 1.00734 1.10555 1.49086 1.52135 1.04289 1.09864 1.19102 0.96902 0.95499 0.71902 1.21378 0.97013 1.46576 0.93928 0.93685 1.25815 1.00284 0.93804 0.98367 1.70014 1.28832 1.44388 1.12515 0.85290 0.78225 0.78690 0.77846 1.19209 1.19361 1.19877 0.92264 0.93944 0.89787 0.88188 0.90424 0.90485 0.88079 0.82332 0.81924 0.75420 0.74188 0.75511 0.74704 0.95210 0.94974 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.50 71.98 0.68 -1.44 16 2 C 0.15 2.01 2.60 44.99 0.12 2.12 16 3 H 0.09 1.39 7.57 -2.39 -0.02 1.37 16 4 C -0.11 -1.00 4.74 30.59 0.14 -0.86 16 5 C -0.04 -0.46 5.64 29.85 0.17 -0.29 16 6 C -0.02 -0.33 6.57 24.83 0.16 -0.17 16 7 C -0.22 -3.21 10.81 22.19 0.24 -2.97 16 8 C -0.23 -2.98 10.91 22.19 0.24 -2.74 16 9 C -0.05 -0.66 12.09 66.97 0.81 0.15 16 10 O -0.19 -3.34 10.65 -2.45 -0.03 -3.37 16 11 N -0.68 -11.77 4.65 -323.48 -1.50 -13.27 16 12 C 0.52 14.34 7.53 133.65 1.01 15.35 16 13 N -0.61 -17.42 9.34 -197.01 -1.84 -19.26 16 14 C 0.38 12.09 12.24 180.87 2.21 14.31 16 15 N -0.61 -26.18 10.47 -198.10 -2.07 -28.26 16 16 C 0.34 15.24 8.04 134.15 1.08 16.32 16 17 C -0.35 -12.12 6.14 -21.29 -0.13 -12.25 16 18 C 0.10 3.23 11.87 85.65 1.02 4.25 16 19 N -0.29 -12.87 12.45 -56.46 -0.70 -13.58 16 20 N -0.37 -18.58 3.63 -348.93 -1.27 -19.85 16 21 C 0.28 16.41 6.19 85.63 0.53 16.94 16 22 C -0.55 -33.18 9.39 25.60 0.24 -32.94 16 23 H 0.04 2.79 7.81 -2.91 -0.02 2.76 16 24 C 0.02 1.04 5.46 84.66 0.46 1.51 16 25 N -0.92 -55.08 13.29 21.45 0.28 -54.79 16 26 Si 0.98 45.46 29.54 68.60 2.03 47.49 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.08 1.03 7.75 -2.39 -0.02 1.01 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.23 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.42 5.51 8.47 -92.71 -0.79 4.72 16 41 H 0.23 5.31 8.06 -2.91 -0.02 5.28 16 42 H 0.24 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.03 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -79.28 390.39 4.12 -75.16 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.23 Total: 12.44 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 8.99 Total: 17.28 kcal Atomic # 7 Polarization: -141.90 SS G_CDS: -7.10 Total: -149.01 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.03 Total: -3.37 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.28 4.12 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.650 kcal (2) G-P(sol) polarization free energy of solvation -79.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds