Wall clock time and date at job start Tue Mar 31 2020 05:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47045 * 119.99717 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 N 1.40062 * 125.87188 * 269.68706 * 10 9 7 12 12 C 1.30252 * 109.68901 * 179.87183 * 11 10 9 13 13 C 1.41169 * 108.47471 * 0.38914 * 12 11 10 14 14 C 1.36312 * 125.87024 * 90.00222 * 10 9 7 15 15 N 1.33199 * 134.62135 * 359.97438 * 14 10 9 16 16 C 1.31504 * 120.68365 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64911 * 359.96868 * 16 15 14 18 18 C 1.32863 * 121.18911 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.80931 * 179.97438 * 18 17 16 20 20 C 1.46826 * 111.00314 * 236.06950 * 19 18 17 21 21 C 1.53049 * 109.61065 * 174.32168 * 20 19 18 22 22 C 1.53251 * 109.14074 * 59.27573 * 21 20 19 23 23 H 1.08999 * 109.62270 * 182.03327 * 22 21 20 24 24 C 1.53041 * 109.10961 * 61.41524 * 22 21 20 25 25 C 1.52960 * 109.58353 * 181.23775 * 24 22 21 26 26 C 1.53019 * 109.41565 * 60.20872 * 25 24 22 27 27 C 1.52987 * 109.36740 * 299.77046 * 26 25 24 28 28 C 1.52845 * 109.61554 * 59.94508 * 27 26 25 29 29 H 1.08991 * 109.20857 * 180.45840 * 28 27 26 30 30 C 1.46878 * 111.00097 * 111.75823 * 19 18 17 31 31 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 33 33 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 34 34 H 1.08011 * 125.76007 * 180.14726 * 12 11 10 35 35 H 1.08006 * 118.67473 * 179.97438 * 16 15 14 36 36 H 1.08995 * 109.44522 * 294.36548 * 20 19 18 37 37 H 1.09003 * 109.44464 * 54.30765 * 20 19 18 38 38 H 1.09006 * 109.52199 * 179.17736 * 21 20 19 39 39 H 1.09004 * 109.52130 * 299.30697 * 21 20 19 40 40 H 1.09000 * 109.44839 * 301.27561 * 24 22 21 41 41 H 1.08996 * 109.44989 * 61.19935 * 24 22 21 42 42 H 1.08992 * 109.47959 * 300.22321 * 25 24 22 43 43 H 1.08999 * 109.47629 * 180.18908 * 25 24 22 44 44 H 1.09005 * 109.48890 * 179.80280 * 26 25 24 45 45 H 1.09004 * 109.51174 * 59.75337 * 26 25 24 46 46 H 1.09008 * 109.44326 * 299.90645 * 27 26 25 47 47 H 1.08992 * 109.42778 * 179.97438 * 27 26 25 48 48 H 1.09002 * 109.46822 * 305.63205 * 30 19 18 49 49 H 1.09000 * 109.46934 * 65.64158 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7317 -4.2405 -1.1344 12 6 3.5482 -5.1882 -0.7714 13 6 3.5853 -5.2308 0.6391 14 6 2.7221 -4.2198 1.1051 15 7 2.5794 -4.0523 2.4188 16 6 3.2324 -4.8156 3.2675 17 7 4.0524 -5.7755 2.8777 18 6 4.2613 -6.0207 1.5887 19 7 5.1205 -7.0258 1.1900 20 6 6.1685 -6.5020 0.3051 21 6 7.1808 -7.6078 -0.0029 22 6 6.4568 -8.7783 -0.6769 23 1 7.1642 -9.5855 -0.8672 24 6 5.8428 -8.2964 -1.9933 25 6 5.0909 -9.4492 -2.6606 26 6 3.9763 -9.9350 -1.7314 27 6 4.5883 -10.4221 -0.4166 28 6 5.3466 -9.2759 0.2522 29 1 5.7864 -9.6322 1.1836 30 6 4.3845 -8.1251 0.5519 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5570 -0.8897 33 1 0.6241 -2.5567 0.8904 34 1 4.1003 -5.8351 -1.4373 35 1 3.0928 -4.6512 4.3258 36 1 5.7180 -6.1533 -0.6241 37 1 6.6766 -5.6719 0.7960 38 1 7.9501 -7.2214 -0.6716 39 1 7.6416 -7.9483 0.9244 40 1 5.1503 -7.4789 -1.7930 41 1 6.6342 -7.9471 -2.6565 42 1 5.7823 -10.2683 -2.8580 43 1 4.6572 -9.1051 -3.5995 44 1 3.4374 -10.7543 -2.2073 45 1 3.2871 -9.1149 -1.5299 46 1 5.2762 -11.2432 -0.6188 47 1 3.7952 -10.7680 0.2462 48 1 3.5988 -8.4735 1.2222 49 1 3.9389 -7.7723 -0.3782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:17 Heat of formation + Delta-G solvation = 111.226510 kcal Electronic energy + Delta-G solvation = -30822.521355 eV Core-core repulsion = 26978.558000 eV Total energy + Delta-G solvation = -3843.963355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.191 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90320 -40.49643 -38.54222 -36.76437 -33.97700 -33.46999 -32.43821 -31.49456 -31.44084 -29.52375 -28.92846 -27.32163 -25.44181 -24.29862 -23.66582 -23.10090 -22.51875 -22.21976 -21.06437 -20.13820 -18.29469 -17.53920 -17.44578 -16.76377 -16.45163 -15.86440 -15.65890 -15.21494 -14.91861 -14.68424 -14.67950 -14.19974 -14.13237 -13.87340 -13.61473 -13.27709 -13.17299 -12.93262 -12.65616 -12.38739 -12.24146 -12.17282 -11.80067 -11.57083 -11.40463 -11.20099 -11.16056 -11.10308 -10.90052 -10.86013 -10.63365 -10.48065 -10.34346 -10.32999 -10.15058 -10.08991 -9.81663 -9.11809 -8.76652 -8.66528 -8.36679 -8.07793 -6.28638 -4.36043 0.84007 1.67297 2.75967 2.85054 3.22122 3.25522 3.29300 3.29906 4.09330 4.26677 4.36272 4.40059 4.44705 4.49056 4.58229 4.68177 4.80389 4.89207 5.01441 5.06256 5.06333 5.13355 5.17682 5.19015 5.20444 5.25802 5.29630 5.38390 5.44757 5.47738 5.61567 5.66815 5.69095 5.75362 5.82541 5.85394 5.87309 5.96860 6.04964 6.11627 6.16442 6.26046 6.28674 6.46374 6.77323 6.91334 6.94712 7.03205 7.25857 7.58465 7.72997 7.82100 8.02330 8.55171 8.66912 9.29522 10.79595 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003071 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.925534 B = 9115.650015 C = 9564.613635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.223 5.223 12 C 0.056 3.944 13 C -0.313 4.313 14 C 0.346 3.654 15 N -0.519 5.519 16 C 0.335 3.665 17 N -0.541 5.541 18 C 0.434 3.566 19 N -0.493 5.493 20 C 0.059 3.941 21 C -0.111 4.111 22 C -0.083 4.083 23 H 0.075 0.925 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.112 4.112 28 C -0.077 4.077 29 H 0.081 0.919 30 C 0.069 3.931 31 H 0.269 0.731 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -20.762 -1.454 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.039 5.039 12 C -0.139 4.139 13 C -0.331 4.331 14 C 0.096 3.904 15 N -0.239 5.239 16 C 0.042 3.958 17 N -0.259 5.259 18 C 0.184 3.816 19 N -0.216 5.216 20 C -0.068 4.068 21 C -0.148 4.148 22 C -0.101 4.101 23 H 0.093 0.907 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.150 4.150 28 C -0.096 4.096 29 H 0.100 0.900 30 C -0.057 4.057 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.218 0.782 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.928 -19.773 -1.129 22.620 hybrid contribution 0.425 0.924 -0.770 1.276 sum 11.353 -18.849 -1.900 22.086 Atomic orbital electron populations 1.69906 1.06020 1.27886 1.48940 1.24896 0.95002 0.99398 0.94276 0.86384 0.79455 0.81749 0.78927 1.19963 1.20796 1.19907 1.21182 0.93501 0.89605 1.53316 0.92087 1.19856 0.85632 0.79756 1.00141 1.49586 1.35915 1.27638 0.98614 1.76960 1.10257 1.07137 1.09550 1.23579 0.99590 0.98392 0.92368 1.20892 1.09306 1.06569 0.96294 1.19125 0.92048 0.90619 0.88577 1.67511 1.27129 1.29034 1.00214 1.24753 0.86496 0.85039 0.99516 1.68089 1.20392 1.21087 1.16364 1.19270 0.86926 0.87732 0.87690 1.58351 1.12538 1.08081 1.42587 1.22267 0.92072 0.97589 0.94880 1.21666 0.97043 0.95079 1.01051 1.21228 0.96684 0.97651 0.94580 0.90699 1.21749 0.99794 0.98232 0.96215 1.21505 0.97587 0.98181 0.98243 1.21611 0.97968 1.00959 0.95757 1.21494 0.99637 0.97324 0.96565 1.21097 0.95378 0.94227 0.98859 0.90049 1.22253 0.95608 0.90105 0.97733 0.92097 0.92638 0.92171 0.79988 0.78224 0.93148 0.90499 0.90958 0.90688 0.91816 0.91776 0.92077 0.92035 0.92102 0.91685 0.91614 0.91830 0.90620 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.16 9.39 -34.44 -0.32 -15.48 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.26 6.90 6.19 -5.19 -0.03 6.87 16 10 N -0.33 -7.76 3.63 -61.64 -0.22 -7.99 16 11 N -0.22 -4.69 12.45 30.81 0.38 -4.31 16 12 C 0.06 0.95 10.05 -17.11 -0.17 0.78 16 13 C -0.31 -5.69 5.42 -106.82 -0.58 -6.27 16 14 C 0.35 7.52 8.04 -156.23 -1.26 6.26 16 15 N -0.52 -10.81 10.47 -13.97 -0.15 -10.96 16 16 C 0.34 5.67 12.24 -92.12 -1.13 4.54 16 17 N -0.54 -9.11 10.45 -13.62 -0.14 -9.25 16 18 C 0.43 7.03 5.73 -154.85 -0.89 6.15 16 19 N -0.49 -6.37 4.69 -172.87 -0.81 -7.18 16 20 C 0.06 0.66 4.79 -3.84 -0.02 0.64 16 21 C -0.11 -0.92 5.60 -26.58 -0.15 -1.07 16 22 C -0.08 -0.63 2.57 -90.43 -0.23 -0.86 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 C -0.12 -0.94 4.63 -26.73 -0.12 -1.06 16 25 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 26 C -0.13 -0.94 5.66 -26.73 -0.15 -1.09 16 27 C -0.11 -0.81 5.44 -26.82 -0.15 -0.96 16 28 C -0.08 -0.64 2.56 -90.67 -0.23 -0.88 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 C 0.07 0.76 3.94 -3.85 -0.02 0.74 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.18 2.36 4.94 -52.48 -0.26 2.10 16 35 H 0.20 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.05 0.57 3.82 -51.93 -0.20 0.37 16 37 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.56 3.48 -51.93 -0.18 0.38 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 46 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 49 H 0.05 0.58 3.47 -51.93 -0.18 0.40 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -31.11 369.74 -12.39 -43.50 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.04 Total: -0.24 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -5.70 Total: -0.89 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.20 Total: -64.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.11 -12.39 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.731 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds