Wall clock time and date at job start Tue Mar 31 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99914 * 2 1 4 4 H 1.48503 * 109.47301 * 270.00097 * 3 2 1 5 5 H 1.48496 * 109.47315 * 30.00134 * 3 2 1 6 6 H 1.48500 * 109.47059 * 149.99955 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00082 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.87132 * 90.02742 * 10 9 7 12 12 C 1.30242 * 109.69579 * 179.97438 * 11 10 9 13 13 C 1.41170 * 108.47105 * 359.97438 * 12 11 10 14 14 C 1.36318 * 125.87534 * 269.98309 * 10 9 7 15 15 N 1.33193 * 134.61839 * 0.04031 * 14 10 9 16 16 C 1.31507 * 120.68098 * 180.02562 * 15 14 10 17 17 N 1.32113 * 122.64875 * 359.97438 * 16 15 14 18 18 C 1.32861 * 121.19655 * 359.97438 * 17 16 15 19 19 N 1.38114 * 120.81686 * 179.97438 * 18 17 16 20 20 C 1.46809 * 110.99562 * 124.48610 * 19 18 17 21 21 C 1.53106 * 109.69117 * 174.40937 * 20 19 18 22 22 C 1.53003 * 109.09299 * 58.96350 * 21 20 19 23 23 H 1.09000 * 109.52922 * 61.83968 * 22 21 20 24 24 C 1.52916 * 109.98308 * 182.20984 * 22 21 20 25 25 C 1.53071 * 109.25657 * 180.19015 * 24 22 21 26 26 C 1.52949 * 109.65163 * 300.18973 * 25 24 22 27 27 C 1.53072 * 109.66306 * 59.54923 * 26 25 24 28 28 C 1.52912 * 109.26064 * 300.20097 * 27 26 25 29 29 H 1.09000 * 109.46423 * 300.63963 * 28 27 26 30 30 C 1.46916 * 110.99977 * 0.02646 * 19 18 17 31 31 H 0.97004 * 120.00039 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.46605 * 60.00146 * 9 7 2 33 33 H 1.09003 * 109.46748 * 300.00485 * 9 7 2 34 34 H 1.08006 * 125.76872 * 179.97438 * 12 11 10 35 35 H 1.08000 * 118.67288 * 179.97438 * 16 15 14 36 36 H 1.08994 * 109.43346 * 294.47434 * 20 19 18 37 37 H 1.08993 * 109.43452 * 54.34481 * 20 19 18 38 38 H 1.09007 * 109.53270 * 299.08401 * 21 20 19 39 39 H 1.08998 * 109.53688 * 178.84726 * 21 20 19 40 40 H 1.08997 * 109.50360 * 60.25181 * 24 22 21 41 41 H 1.08999 * 109.54225 * 300.14953 * 24 22 21 42 42 H 1.08995 * 109.43756 * 180.12952 * 25 24 22 43 43 H 1.09000 * 109.43853 * 60.24571 * 25 24 22 44 44 H 1.09002 * 109.43872 * 299.49148 * 26 25 24 45 45 H 1.09001 * 109.41001 * 179.59035 * 26 25 24 46 46 H 1.08995 * 109.50726 * 180.25978 * 27 26 25 47 47 H 1.09001 * 109.53602 * 60.15661 * 27 26 25 48 48 H 1.08997 * 109.49110 * 305.70740 * 30 19 18 49 49 H 1.09004 * 109.49316 * 65.76528 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7359 -4.2368 1.1345 12 6 3.5485 -5.1878 0.7716 13 6 3.5850 -5.2310 -0.6389 14 6 2.7219 -4.2201 -1.1051 15 7 2.5791 -4.0527 -2.4187 16 6 3.2312 -4.8169 -3.2673 17 7 4.0509 -5.7769 -2.8775 18 6 4.2608 -6.0213 -1.5885 19 7 5.1190 -7.0272 -1.1897 20 6 6.1606 -6.5064 -0.2957 21 6 7.0087 -7.6640 0.2378 22 6 7.6405 -8.4065 -0.9414 23 1 8.2967 -7.7297 -1.4888 24 6 8.4488 -9.6013 -0.4341 25 6 9.0767 -10.3286 -1.6257 26 6 7.9759 -10.8158 -2.5692 27 6 7.1587 -9.6213 -3.0676 28 6 6.5308 -8.9053 -1.8712 29 1 5.8880 -9.5990 -1.3293 30 6 5.7028 -7.7124 -2.3508 31 1 -0.4850 0.8401 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6246 -2.5570 0.8897 34 1 4.1011 -5.8343 1.4374 35 1 3.0910 -4.6532 -4.3256 36 1 6.7974 -5.8137 -0.8458 37 1 5.6938 -5.9839 0.5392 38 1 6.3764 -8.3488 0.8030 39 1 7.7938 -7.2727 0.8848 40 1 7.7907 -10.2840 0.1034 41 1 9.2354 -9.2519 0.2347 42 1 9.6518 -11.1824 -1.2675 43 1 9.7370 -9.6458 -2.1605 44 1 7.3215 -11.5063 -2.0371 45 1 8.4276 -11.3266 -3.4196 46 1 6.3723 -9.9718 -3.7359 47 1 7.8109 -8.9315 -3.6032 48 1 4.9049 -8.0629 -3.0053 49 1 6.3438 -7.0204 -2.8970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:21 Heat of formation + Delta-G solvation = 100.567048 kcal Electronic energy + Delta-G solvation = -29921.997857 eV Core-core repulsion = 26077.572273 eV Total energy + Delta-G solvation = -3844.425584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69044 -40.25290 -38.50582 -37.02795 -33.94280 -33.47097 -32.49039 -31.54106 -31.41223 -29.54585 -29.17603 -27.29008 -25.20666 -24.32408 -23.33473 -22.93707 -22.33518 -21.94239 -20.44969 -20.08031 -19.88454 -17.58397 -17.39736 -16.70923 -16.39770 -15.48422 -15.41599 -15.13783 -14.93777 -14.60339 -14.54171 -14.19576 -14.10918 -14.05038 -13.85851 -13.39459 -13.15018 -12.94399 -12.67855 -12.21139 -12.15873 -11.81966 -11.77936 -11.66822 -11.49350 -11.26396 -11.15975 -11.10842 -11.03141 -10.88881 -10.79412 -10.64580 -10.31858 -10.22008 -10.12806 -10.08393 -9.81962 -9.26081 -8.80416 -8.62432 -8.33226 -7.86734 -6.24535 -4.31330 1.04084 1.76343 2.90086 2.96427 3.22694 3.28262 3.33381 3.37479 4.18844 4.29495 4.32837 4.34762 4.38685 4.44935 4.65165 4.74954 4.78046 4.88562 4.95443 5.06135 5.10259 5.11360 5.13485 5.19240 5.23413 5.26960 5.31666 5.40065 5.46078 5.53102 5.56318 5.61052 5.71040 5.74839 5.76170 5.81163 5.88395 5.92835 5.96279 5.99079 6.07234 6.24777 6.33790 6.52045 6.64898 6.99513 7.04993 7.12312 7.30208 7.62997 7.78987 7.87621 8.13765 8.62804 8.72988 9.33807 10.83716 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.002473 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.753215 B =11320.616729 C =11666.614961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.235 5.235 12 C 0.069 3.931 13 C -0.298 4.298 14 C 0.351 3.649 15 N -0.535 5.535 16 C 0.349 3.651 17 N -0.598 5.598 18 C 0.433 3.567 19 N -0.470 5.470 20 C 0.057 3.943 21 C -0.112 4.112 22 C -0.086 4.086 23 H 0.069 0.931 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.112 4.112 28 C -0.083 4.083 29 H 0.079 0.921 30 C 0.073 3.927 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.188 0.812 35 H 0.196 0.804 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.713 -20.977 -3.660 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.051 5.051 12 C -0.126 4.126 13 C -0.315 4.315 14 C 0.103 3.897 15 N -0.257 5.257 16 C 0.055 3.945 17 N -0.324 5.324 18 C 0.183 3.817 19 N -0.186 5.186 20 C -0.069 4.069 21 C -0.150 4.150 22 C -0.105 4.105 23 H 0.087 0.913 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.102 4.102 29 H 0.097 0.903 30 C -0.053 4.053 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.205 0.795 35 H 0.213 0.787 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.107 0.893 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.421 -20.188 -3.219 25.608 hybrid contribution 1.087 0.967 -0.279 1.481 sum 16.508 -19.222 -3.498 25.578 Atomic orbital electron populations 1.69918 1.06004 1.27681 1.49208 1.24899 0.94994 0.99377 0.94407 0.86338 0.79661 0.82183 0.78381 1.20271 1.20787 1.19774 1.21229 0.93512 0.89639 1.52909 0.92075 1.19823 0.85667 0.79802 1.00079 1.49512 1.35821 1.27782 0.98702 1.76972 1.10955 1.07803 1.09371 1.23554 0.99000 0.97579 0.92458 1.19679 1.10311 1.05930 0.95542 1.19028 0.91656 0.90474 0.88556 1.67522 1.27869 1.30117 1.00156 1.24507 0.85896 0.84743 0.99311 1.68328 1.24689 1.23683 1.15651 1.19418 0.89676 0.84931 0.87691 1.58474 1.18542 1.22968 1.18627 1.22368 0.91464 0.96779 0.96265 1.21684 0.98687 0.96964 0.97678 1.21250 0.96396 0.96731 0.96124 0.91290 1.21550 0.99108 0.96868 0.97430 1.21534 0.97743 0.99844 0.96612 1.21514 0.97454 0.97615 0.98962 1.21506 0.99278 0.97110 0.97096 1.21261 0.95957 0.96604 0.96340 0.90270 1.22041 0.98215 0.94769 0.90308 0.92218 0.92245 0.92675 0.79510 0.78733 0.93401 0.89034 0.90545 0.90676 0.91809 0.92018 0.92226 0.92128 0.91986 0.92148 0.91666 0.91906 0.89289 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 7.00 6.19 -5.19 -0.03 6.97 16 10 N -0.33 -7.93 3.63 -61.64 -0.22 -8.16 16 11 N -0.24 -5.04 12.45 30.80 0.38 -4.66 16 12 C 0.07 1.20 10.69 -17.11 -0.18 1.01 16 13 C -0.30 -5.52 5.74 -106.82 -0.61 -6.13 16 14 C 0.35 7.77 8.04 -156.23 -1.26 6.52 16 15 N -0.53 -11.27 10.47 -13.97 -0.15 -11.42 16 16 C 0.35 5.89 12.24 -92.13 -1.13 4.76 16 17 N -0.60 -9.63 8.85 -13.62 -0.12 -9.75 16 18 C 0.43 6.94 6.43 -154.84 -1.00 5.94 16 19 N -0.47 -5.87 4.67 -172.84 -0.81 -6.67 16 20 C 0.06 0.60 5.23 -3.82 -0.02 0.58 16 21 C -0.11 -0.88 5.42 -26.67 -0.14 -1.03 16 22 C -0.09 -0.65 2.01 -90.59 -0.18 -0.83 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 C -0.11 -0.71 5.25 -26.74 -0.14 -0.85 16 25 C -0.12 -0.72 5.92 -26.72 -0.16 -0.87 16 26 C -0.12 -0.73 5.92 -26.72 -0.16 -0.89 16 27 C -0.11 -0.79 5.25 -26.74 -0.14 -0.93 16 28 C -0.08 -0.68 2.10 -90.63 -0.19 -0.87 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 C 0.07 0.79 3.99 -3.85 -0.02 0.77 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 33 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.19 2.37 6.86 -52.48 -0.36 2.01 16 35 H 0.20 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.00 4.95 -51.93 -0.26 0.74 16 38 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 49 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -31.47 383.44 -12.95 -44.41 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.75 Total: -1.60 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -5.78 Total: 0.42 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -0.18 Total: -65.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.47 -12.95 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.980 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds