Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48504 * 109.47292 * 270.00149 * 3 2 1 5 5 H 1.48508 * 109.46871 * 30.00142 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99922 * 3 2 1 7 7 C 1.37877 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00047 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47279 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87558 * 270.04486 * 10 9 7 12 12 C 1.30261 * 109.69308 * 179.97438 * 11 10 9 13 13 C 1.41151 * 108.46935 * 359.97438 * 12 11 10 14 14 C 1.36315 * 125.87784 * 89.99592 * 10 9 7 15 15 N 1.33210 * 134.60844 * 0.03870 * 14 10 9 16 16 C 1.31521 * 120.69091 * 179.97438 * 15 14 10 17 17 N 1.32106 * 122.64760 * 359.97057 * 16 15 14 18 18 C 1.32901 * 121.19356 * 0.05108 * 17 16 15 19 19 N 1.38088 * 120.81647 * 180.24261 * 18 17 16 20 20 C 1.40752 * 120.00177 * 359.71439 * 19 18 17 21 21 C 1.40249 * 126.07289 * 0.02971 * 20 19 18 22 22 N 1.30840 * 108.34527 * 179.97438 * 21 20 19 23 23 N 1.40071 * 108.37156 * 0.02562 * 22 21 20 24 24 C 1.46497 * 126.06031 * 179.97438 * 23 22 21 25 25 C 1.50699 * 109.47263 * 304.97376 * 24 23 22 26 26 N 1.34773 * 119.99948 * 180.02562 * 25 24 23 27 27 O 1.21285 * 119.99649 * 359.97438 * 25 24 23 28 28 C 1.35746 * 126.07891 * 179.71633 * 20 19 18 29 29 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46958 * 59.99652 * 9 7 2 31 31 H 1.09001 * 109.47123 * 299.99720 * 9 7 2 32 32 H 1.07995 * 125.76714 * 180.02562 * 12 11 10 33 33 H 1.07997 * 118.67496 * 180.02562 * 16 15 14 34 34 H 0.97006 * 119.99871 * 179.72145 * 19 18 17 35 35 H 1.07996 * 125.82933 * 359.97438 * 21 20 19 36 36 H 1.09001 * 109.47166 * 64.97724 * 24 23 22 37 37 H 1.09005 * 109.47161 * 184.97211 * 24 23 22 38 38 H 0.96993 * 120.00322 * 359.97438 * 26 25 24 39 39 H 0.97004 * 120.00114 * 179.97438 * 26 25 24 40 40 H 1.08002 * 126.22100 * 0.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.7369 -4.2360 -1.1344 12 6 3.5500 -5.1868 -0.7714 13 6 3.5865 -5.2297 0.6390 14 6 2.7220 -4.2199 1.1050 15 7 2.5785 -4.0529 2.4188 16 6 3.2311 -4.8166 3.2678 17 7 4.0511 -5.7763 2.8783 18 6 4.2614 -6.0208 1.5890 19 7 5.1165 -7.0292 1.1906 20 6 5.7825 -7.8091 2.1546 21 6 5.6721 -7.6738 3.5462 22 7 6.4376 -8.5730 4.1094 23 7 7.0645 -9.3142 3.0997 24 6 8.0050 -10.4196 3.2987 25 6 9.1442 -9.9591 4.1711 26 7 10.1366 -10.8133 4.4901 27 8 9.1684 -8.8194 4.5853 28 6 6.6414 -8.8297 1.9027 29 1 -0.4849 0.8401 0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 4.1034 -5.8325 -1.4370 33 1 3.0902 -4.6530 4.3260 34 1 5.2582 -7.2001 0.2463 35 1 5.0597 -6.9507 4.0644 36 1 7.4912 -11.2513 3.7810 37 1 8.3944 -10.7437 2.3336 38 1 10.1175 -11.7246 4.1585 39 1 10.8702 -10.5168 5.0513 40 1 6.9370 -9.1893 0.9282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = 180.052288 kcal Electronic energy + Delta-G solvation = -27894.719081 eV Core-core repulsion = 23748.940886 eV Total energy + Delta-G solvation = -4145.778195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59615 -41.16742 -39.63780 -38.46442 -36.28764 -34.23330 -33.77889 -33.07377 -32.25496 -31.34912 -30.24272 -28.95072 -27.46380 -26.82041 -24.08766 -23.57828 -22.55006 -22.18400 -21.03088 -20.89261 -19.75540 -18.33522 -17.87964 -17.56660 -17.34352 -16.69358 -16.41805 -16.26104 -16.07279 -15.25917 -15.20327 -14.78840 -14.63922 -14.31020 -14.12475 -13.86047 -13.66377 -13.38892 -13.24919 -12.89326 -12.61063 -12.20097 -11.93384 -11.65559 -11.07034 -10.96992 -10.82203 -10.73871 -10.52192 -10.28502 -10.20326 -10.16005 -10.09438 -9.67118 -9.38596 -8.74214 -8.66418 -8.58261 -8.03784 -7.30465 -6.20802 -4.27214 1.14935 1.68074 1.95096 2.10452 2.12694 2.88939 2.94598 2.99758 3.07647 3.13584 3.26080 3.31743 3.38115 4.17913 4.31003 4.32204 4.38745 4.53020 4.55776 4.61776 4.72629 4.87076 5.08493 5.14368 5.15407 5.43027 5.54489 5.61621 5.74595 6.22601 6.25645 6.58473 6.62696 6.75452 6.86676 6.97641 7.04454 7.09369 7.24569 7.47443 7.68110 7.74022 7.76480 7.89232 7.91971 8.19933 8.71206 8.79675 9.37877 10.87410 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002099 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.573469 B =13338.245731 C =13670.322256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.240 5.240 12 C 0.068 3.932 13 C -0.332 4.332 14 C 0.365 3.635 15 N -0.549 5.549 16 C 0.367 3.633 17 N -0.612 5.612 18 C 0.509 3.491 19 N -0.617 5.617 20 C 0.029 3.971 21 C 0.055 3.945 22 N -0.263 5.263 23 N -0.374 5.374 24 C 0.127 3.873 25 C 0.499 3.501 26 N -0.857 5.857 27 O -0.506 6.506 28 C -0.001 4.001 29 H 0.268 0.732 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.199 0.801 34 H 0.419 0.581 35 H 0.220 0.780 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.401 0.599 39 H 0.405 0.595 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 -26.606 4.093 31.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.056 5.056 12 C -0.127 4.127 13 C -0.349 4.349 14 C 0.117 3.883 15 N -0.273 5.273 16 C 0.073 3.927 17 N -0.342 5.342 18 C 0.257 3.743 19 N -0.242 5.242 20 C -0.076 4.076 21 C -0.134 4.134 22 N -0.082 5.082 23 N -0.160 5.160 24 C 0.001 3.999 25 C 0.281 3.719 26 N -0.423 5.423 27 O -0.378 6.378 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.201 0.799 33 H 0.215 0.785 34 H 0.256 0.744 35 H 0.236 0.764 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.229 0.771 39 H 0.237 0.763 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.236 -25.269 5.311 30.501 hybrid contribution 1.101 0.281 -1.441 1.835 sum 17.338 -24.988 3.870 30.659 Atomic orbital electron populations 1.69920 1.05993 1.27635 1.49323 1.24897 0.94990 0.99367 0.94437 0.86339 0.79749 0.82207 0.78272 1.20372 1.20800 1.19734 1.21242 0.93562 0.89646 1.52760 0.92022 1.19819 0.85667 0.79812 1.00070 1.49479 1.35751 1.27709 0.98747 1.76954 1.11325 1.07959 1.09379 1.23378 0.99176 0.97990 0.92191 1.19522 1.12345 1.07754 0.95296 1.18931 0.91009 0.89802 0.88557 1.67531 1.29281 1.30512 0.99954 1.24523 0.84969 0.83828 0.99384 1.67815 1.26464 1.25513 1.14385 1.17759 0.84202 0.83903 0.88411 1.41001 1.43916 1.31748 1.07580 1.17704 1.02187 0.97484 0.90220 1.25009 0.98342 0.98364 0.91713 1.77504 1.10724 1.07452 1.12555 1.47577 1.36251 1.28402 1.03742 1.21276 0.88546 0.87991 1.02135 1.20704 0.83541 0.86100 0.81574 1.43785 1.26561 1.15665 1.56273 1.90884 1.76389 1.18570 1.51936 1.21658 1.02472 0.99449 0.91091 0.92263 0.92754 0.92150 0.79941 0.78477 0.74374 0.76420 0.86968 0.85921 0.77076 0.76332 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.26 6.98 6.19 -5.20 -0.03 6.95 16 10 N -0.33 -7.83 3.63 -61.65 -0.22 -8.05 16 11 N -0.24 -5.05 12.45 30.80 0.38 -4.66 16 12 C 0.07 1.11 11.87 -17.11 -0.20 0.91 16 13 C -0.33 -5.89 6.14 -106.81 -0.66 -6.55 16 14 C 0.37 7.95 8.04 -156.22 -1.26 6.69 16 15 N -0.55 -11.40 10.47 -13.97 -0.15 -11.55 16 16 C 0.37 6.04 12.24 -92.12 -1.13 4.91 16 17 N -0.61 -9.64 6.65 -13.61 -0.09 -9.73 16 18 C 0.51 7.87 7.52 -154.82 -1.16 6.71 16 19 N -0.62 -7.25 5.59 -9.85 -0.06 -7.31 16 20 C 0.03 0.36 6.92 -83.89 -0.58 -0.23 16 21 C 0.06 0.77 10.85 -17.22 -0.19 0.59 16 22 N -0.26 -3.68 11.63 30.70 0.36 -3.33 16 23 N -0.37 -3.79 3.43 -62.19 -0.21 -4.01 16 24 C 0.13 0.65 7.00 -5.20 -0.04 0.62 16 25 C 0.50 3.81 8.13 -10.99 -0.09 3.72 16 26 N -0.86 -2.48 8.87 31.22 0.28 -2.21 16 27 O -0.51 -7.05 16.55 5.55 0.09 -6.96 16 28 C 0.00 -0.01 11.52 -16.65 -0.19 -0.20 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.42 3.54 8.69 -40.82 -0.35 3.19 16 35 H 0.22 3.15 5.62 -52.49 -0.29 2.85 16 36 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.12 0.12 8.07 -51.93 -0.42 -0.30 16 38 H 0.40 -0.38 8.83 -40.82 -0.36 -0.74 16 39 H 0.41 1.15 8.93 -40.82 -0.36 0.78 16 40 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -40.30 359.55 -8.31 -48.60 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.88 Total: 1.68 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -5.95 Total: 10.34 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: 1.03 Total: -75.89 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.09 Total: -6.96 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.30 -8.31 -48.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.654 kcal (2) G-P(sol) polarization free energy of solvation -40.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds