Wall clock time and date at job start Tue Mar 31 2020 04:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 C 1.53000 * 109.46597 * 240.00135 * 2 1 3 5 5 N 1.46491 * 109.47211 * 120.00508 * 2 1 3 6 6 C 1.35881 * 126.06042 * 74.99620 * 5 2 1 7 7 C 1.35755 * 107.55605 * 179.97438 * 6 5 2 8 8 N 1.40759 * 126.07453 * 179.73690 * 7 6 5 9 9 C 1.38082 * 119.99566 * 180.02562 * 8 7 6 10 10 N 1.32903 * 120.81860 * 359.72096 * 9 8 7 11 11 C 1.32107 * 121.18966 * 179.71605 * 10 9 8 12 12 N 1.31518 * 122.65367 * 0.57899 * 11 10 9 13 13 C 1.33208 * 120.68503 * 359.71559 * 12 11 10 14 14 C 1.40852 * 120.81531 * 179.97438 * 9 8 7 15 15 C 1.41151 * 134.69920 * 0.02562 * 14 9 8 16 16 N 1.30264 * 108.47126 * 179.97438 * 15 14 9 17 17 N 1.36321 * 134.60958 * 179.97438 * 13 12 11 18 18 C 1.46498 * 125.87349 * 0.03814 * 17 13 12 19 19 C 1.50700 * 109.47110 * 89.99885 * 18 17 13 20 20 H 1.07998 * 120.00245 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99705 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99864 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46885 * 89.99638 * 23 21 19 25 25 H 1.48497 * 109.47041 * 210.00196 * 23 21 19 26 26 H 1.48502 * 109.46956 * 330.00326 * 23 21 19 27 27 C 1.40248 * 107.84502 * 0.02562 * 7 6 5 28 28 N 1.30839 * 108.34698 * 359.97438 * 27 7 6 29 29 H 1.09001 * 109.46547 * 299.99874 * 1 2 3 30 30 H 1.08997 * 109.47168 * 59.99492 * 1 2 3 31 31 H 1.08992 * 109.47308 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47386 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47467 * 300.00325 * 3 2 1 34 34 H 1.09007 * 109.47005 * 60.00249 * 3 2 1 35 35 H 1.08992 * 109.47426 * 300.00093 * 4 2 1 36 36 H 1.09006 * 109.47181 * 60.00177 * 4 2 1 37 37 H 1.09002 * 109.46887 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.22110 * 0.02562 * 6 5 2 39 39 H 0.96998 * 119.99827 * 359.97438 * 8 7 6 40 40 H 1.08001 * 118.67956 * 180.31520 * 11 10 9 41 41 H 1.07998 * 125.76723 * 359.94699 * 15 14 9 42 42 H 1.09003 * 109.46997 * 209.99742 * 18 17 13 43 43 H 1.09003 * 109.47125 * 329.99300 * 18 17 13 44 44 H 0.97005 * 119.99486 * 180.02562 * 22 21 19 45 45 H 1.08001 * 125.82457 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1960 6 6 2.0169 -2.0340 1.4006 7 6 2.5517 -2.2620 2.6273 8 7 2.7304 -3.5201 3.2328 9 6 3.2899 -3.6069 4.4922 10 7 3.6705 -2.5135 5.1450 11 6 4.2014 -2.5876 6.3524 12 7 4.3955 -3.7306 6.9734 13 6 4.0522 -4.8828 6.3996 14 6 3.4761 -4.8567 5.1145 15 6 3.2136 -6.1953 4.7518 16 7 3.5946 -6.9696 5.7276 17 7 4.1209 -6.1935 6.7680 18 6 4.6521 -6.7025 8.0348 19 6 3.5410 -6.7816 9.0498 20 1 2.5394 -6.4823 8.7786 21 6 3.8032 -7.2363 10.3248 22 7 5.0228 -7.6013 10.6549 23 14 2.4262 -7.3337 11.5833 24 1 1.7801 -8.6686 11.5077 25 1 2.9842 -7.1300 12.9443 26 1 1.4196 -6.2798 11.2982 27 6 2.8884 -1.0208 3.1868 28 7 2.5698 -0.0834 2.3314 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 1.6566 -2.7840 0.7120 39 1 2.4599 -4.3259 2.7656 40 1 4.4916 -1.6730 6.8480 41 1 2.7712 -6.5223 3.8224 42 1 5.0734 -7.6957 7.8791 43 1 5.4297 -6.0310 8.3987 44 1 5.2072 -7.9215 11.5519 45 1 3.3346 -0.8654 4.1580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:45 Heat of formation + Delta-G solvation = 201.857202 kcal Electronic energy + Delta-G solvation = -28509.977443 eV Core-core repulsion = 24566.403786 eV Total energy + Delta-G solvation = -3943.573657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61036 -41.18322 -38.56386 -37.27650 -35.85519 -33.73381 -32.29999 -31.39161 -30.58262 -30.13051 -28.38263 -27.87665 -27.53822 -27.08517 -24.11453 -23.62757 -22.86609 -22.28403 -20.88465 -20.31238 -19.29126 -17.96417 -17.64097 -16.76423 -16.62701 -16.26761 -15.65064 -15.56439 -15.11904 -14.83315 -14.56276 -14.33928 -14.14155 -13.99142 -13.76773 -13.42577 -13.26338 -12.88862 -12.72757 -12.53115 -12.51708 -12.23539 -12.19598 -12.01072 -11.66490 -11.57302 -11.51902 -11.07624 -10.97693 -10.75885 -10.68992 -10.29824 -10.17063 -10.10333 -9.68167 -9.36525 -8.74170 -8.67451 -8.59455 -8.04033 -7.28469 -6.21967 -4.28442 1.15683 1.72723 1.99202 2.22123 2.88426 2.93870 3.07802 3.12810 3.24843 3.30516 3.36572 4.09585 4.30801 4.33273 4.37739 4.43513 4.53250 4.61643 4.71383 4.85878 4.96951 5.00131 5.10782 5.11749 5.13840 5.19817 5.27736 5.30788 5.37946 5.46179 5.51365 5.57394 5.63799 5.73303 5.74893 5.91482 6.24916 6.59597 6.73800 6.91901 6.99701 7.04243 7.08372 7.25374 7.47225 7.69431 7.76390 7.88668 7.90867 8.19069 8.69991 8.78506 9.36607 10.86235 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.002149 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.032173 B =13028.607300 C =13245.787081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.187 3.813 3 C -0.143 4.143 4 C -0.159 4.159 5 N -0.366 5.366 6 C 0.004 3.996 7 C 0.020 3.980 8 N -0.618 5.618 9 C 0.509 3.491 10 N -0.613 5.613 11 C 0.366 3.634 12 N -0.549 5.549 13 C 0.365 3.635 14 C -0.332 4.332 15 C 0.068 3.932 16 N -0.241 5.241 17 N -0.331 5.331 18 C 0.263 3.737 19 C -0.533 4.533 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.053 3.947 28 N -0.288 5.288 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.168 0.832 39 H 0.418 0.582 40 H 0.198 0.802 41 H 0.183 0.817 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.268 0.732 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 14.304 -24.575 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.104 3.896 3 C -0.201 4.201 4 C -0.217 4.217 5 N -0.153 5.153 6 C -0.143 4.143 7 C -0.086 4.086 8 N -0.243 5.243 9 C 0.258 3.742 10 N -0.343 5.343 11 C 0.072 3.928 12 N -0.273 5.273 13 C 0.117 3.883 14 C -0.350 4.350 15 C -0.127 4.127 16 N -0.056 5.056 17 N -0.117 5.117 18 C 0.146 3.854 19 C -0.572 4.572 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.135 4.135 28 N -0.109 5.109 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.185 0.815 39 H 0.255 0.745 40 H 0.215 0.785 41 H 0.200 0.800 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.201 15.034 -23.654 28.705 hybrid contribution -1.166 -1.476 0.080 1.883 sum -7.367 13.557 -23.574 28.174 Atomic orbital electron populations 1.22268 0.93249 1.03015 1.03241 1.20600 0.94100 0.93536 0.81317 1.21901 1.02251 0.92976 1.02975 1.22239 1.02397 1.00963 0.96124 1.48576 1.49171 1.03324 1.14198 1.21620 1.07441 0.87378 0.97884 1.17739 1.10094 0.86574 0.94157 1.41013 1.62823 1.06219 1.14202 1.17760 0.84980 0.87536 0.83971 1.67815 1.25078 1.28910 1.12464 1.24510 0.87829 0.94740 0.85692 1.67527 1.26109 0.96228 1.37475 1.18932 0.92616 0.87829 0.88936 1.19523 1.20333 0.94360 1.00759 1.23379 1.01227 0.89184 0.98951 1.76957 1.12994 1.19801 0.95892 1.49482 1.46943 0.99822 1.15432 1.19818 0.95077 0.96508 0.73960 1.21238 0.95068 1.45253 0.95636 0.92035 1.24902 0.96182 0.94585 0.98044 1.69923 1.19268 1.42937 1.20737 0.86336 0.81541 0.78581 0.80093 1.20366 1.20794 1.19746 1.24938 0.99832 0.87883 1.00872 1.77351 1.17319 1.22306 0.93891 0.91561 0.90618 0.91890 0.91596 0.91142 0.90919 0.91693 0.90305 0.91494 0.81455 0.74466 0.78543 0.79975 0.92757 0.92168 0.92255 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.73 37.16 0.32 -0.59 16 2 C 0.19 1.30 1.24 -131.82 -0.16 1.13 16 3 C -0.14 -0.96 8.09 37.15 0.30 -0.66 16 4 C -0.16 -0.78 8.29 37.16 0.31 -0.48 16 5 N -0.37 -3.66 3.45 -48.31 -0.17 -3.83 16 6 C 0.00 0.04 10.67 -16.65 -0.18 -0.14 16 7 C 0.02 0.23 6.92 -83.89 -0.58 -0.35 16 8 N -0.62 -7.23 5.59 -9.84 -0.06 -7.28 16 9 C 0.51 7.78 7.52 -154.82 -1.16 6.62 16 10 N -0.61 -9.43 6.65 -13.61 -0.09 -9.52 16 11 C 0.37 5.91 12.24 -92.12 -1.13 4.78 16 12 N -0.55 -11.30 10.47 -13.97 -0.15 -11.45 16 13 C 0.37 7.90 8.04 -156.22 -1.26 6.64 16 14 C -0.33 -5.87 6.14 -106.81 -0.66 -6.53 16 15 C 0.07 1.11 11.87 -17.11 -0.20 0.90 16 16 N -0.24 -5.05 12.45 30.80 0.38 -4.66 16 17 N -0.33 -7.80 3.63 -61.64 -0.22 -8.02 16 18 C 0.26 6.96 6.19 -5.19 -0.03 6.93 16 19 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 23 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.05 0.70 10.85 -17.22 -0.19 0.51 16 28 N -0.29 -3.67 11.65 30.70 0.36 -3.31 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.59 8.05 -51.92 -0.42 0.17 16 35 H 0.06 0.28 7.39 -51.93 -0.38 -0.10 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.17 1.03 7.58 -52.49 -0.40 0.63 16 39 H 0.42 3.62 8.69 -40.82 -0.35 3.26 16 40 H 0.20 2.35 8.06 -52.49 -0.42 1.92 16 41 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.22 2.94 5.62 -52.49 -0.29 2.65 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -34.14 382.53 -9.54 -43.68 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.04 Total: 1.84 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -5.04 Total: 5.07 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: 0.80 Total: -73.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.14 -9.54 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.535 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds