Wall clock time and date at job start Tue Mar 31 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47189 * 2 1 4 4 C 1.53003 * 109.46981 * 119.99972 * 2 1 3 5 5 O 1.42899 * 109.47325 * 55.00147 * 4 2 1 6 6 C 1.35892 * 117.00056 * 180.02562 * 5 4 2 7 7 C 1.38767 * 120.04543 * 359.71954 * 6 5 4 8 8 C 1.38133 * 119.99877 * 179.75006 * 7 6 5 9 9 C 1.38250 * 120.07645 * 0.52513 * 8 7 6 10 10 C 1.38474 * 120.08601 * 359.75346 * 9 8 7 11 11 F 1.35103 * 119.99378 * 179.97438 * 10 9 8 12 12 C 1.38384 * 120.00386 * 359.96869 * 10 9 8 13 13 N 1.46502 * 109.46775 * 239.99617 * 2 1 3 14 14 C 1.34772 * 119.99833 * 85.00320 * 13 2 1 15 15 O 1.21591 * 120.00101 * 359.97438 * 14 13 2 16 16 C 1.47637 * 120.00203 * 179.97438 * 14 13 2 17 17 C 1.40011 * 119.89328 * 359.72442 * 16 14 13 18 18 C 1.36321 * 120.10635 * 179.75690 * 17 16 14 19 19 C 1.40891 * 119.89165 * 0.51873 * 18 17 16 20 20 C 1.41104 * 120.10490 * 179.71623 * 19 18 17 21 21 H 1.08000 * 120.00030 * 204.64958 * 20 19 18 22 22 C 1.40233 * 119.99924 * 24.65469 * 20 19 18 23 23 N 1.30644 * 120.00024 * 17.85635 * 22 20 19 24 24 Si 1.86801 * 119.99757 * 197.86596 * 22 20 19 25 25 H 1.48494 * 109.47387 * 59.99917 * 24 22 20 26 26 H 1.48502 * 109.46911 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47212 * 299.99507 * 24 22 20 28 28 C 1.40888 * 119.79082 * 359.73686 * 19 18 17 29 29 C 1.36315 * 119.89507 * 0.02562 * 28 19 18 30 30 H 1.08994 * 109.47286 * 59.99855 * 1 2 3 31 31 H 1.09004 * 109.47366 * 299.99772 * 1 2 3 32 32 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47127 * 175.00034 * 4 2 1 34 34 H 1.08998 * 109.46942 * 294.99756 * 4 2 1 35 35 H 1.08004 * 120.00229 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.96287 * 180.27954 * 8 7 6 37 37 H 1.08005 * 119.95395 * 179.76797 * 9 8 7 38 38 H 1.08006 * 120.03552 * 180.02562 * 12 10 9 39 39 H 0.96996 * 120.00180 * 264.99621 * 13 2 1 40 40 H 1.08001 * 119.95039 * 0.02562 * 17 16 14 41 41 H 1.07995 * 120.05471 * 180.23241 * 18 17 16 42 42 H 0.97005 * 120.00022 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.05252 * 179.97438 * 28 19 18 44 44 H 1.07999 * 119.94776 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.4702 -2.0304 1.3095 6 6 1.8226 -2.8086 2.3663 7 6 2.7035 -2.3240 3.3228 8 6 3.0570 -3.1139 4.3994 9 6 2.5426 -4.3915 4.5199 10 6 1.6678 -4.8805 3.5644 11 9 1.1666 -6.1295 3.6836 12 6 1.3068 -4.0900 2.4874 13 7 2.0183 -0.6907 -1.1962 14 6 2.1470 -0.0184 -2.3571 15 8 1.8574 1.1612 -2.4119 16 6 2.6395 -0.7143 -3.5625 17 6 2.9778 -2.0713 -3.4955 18 6 3.4284 -2.7193 -4.6070 19 6 3.5638 -2.0186 -5.8218 20 6 4.0354 -2.6834 -6.9736 21 1 4.5118 -2.1224 -7.7639 22 6 3.8854 -4.0727 -7.0921 23 7 3.0254 -4.7035 -6.3376 24 14 4.9154 -5.0212 -8.3285 25 1 6.3556 -4.8414 -8.0145 26 1 4.5701 -6.4638 -8.2572 27 1 4.6397 -4.5128 -9.6962 28 6 3.2272 -0.6519 -5.8828 29 6 2.7729 -0.0136 -4.7673 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7995 1.2057 34 1 1.7516 -0.1583 2.1370 35 1 3.1093 -1.3276 3.2278 36 1 3.7391 -2.7346 5.1459 37 1 2.8232 -5.0088 5.3605 38 1 0.6242 -4.4708 1.7420 39 1 2.2490 -1.6318 -1.1526 40 1 2.8775 -2.6066 -2.5629 41 1 3.6855 -3.7669 -4.5554 42 1 2.9213 -5.6645 -6.4198 43 1 3.3298 -0.1105 -6.8118 44 1 2.5151 1.0342 -4.8131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097230001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:33 Heat of formation + Delta-G solvation = -85.526840 kcal Electronic energy + Delta-G solvation = -28197.868085 eV Core-core repulsion = 23994.182484 eV Total energy + Delta-G solvation = -4203.685601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.17710 -40.50819 -39.21046 -37.76130 -37.08422 -34.98905 -33.87909 -31.60184 -30.99835 -30.03882 -29.56591 -29.40377 -27.04950 -25.89651 -23.31118 -23.01702 -22.19478 -21.09468 -20.55700 -19.72472 -18.78937 -17.53945 -17.25161 -16.65228 -16.54490 -16.31642 -16.24277 -15.80263 -15.50784 -15.23779 -14.60984 -14.16658 -14.12057 -14.00294 -13.85323 -13.43198 -13.14975 -13.05436 -12.80802 -12.67048 -12.34652 -12.20364 -12.06320 -11.95718 -11.76466 -11.37838 -11.34754 -11.26517 -11.13075 -11.03712 -10.99210 -10.64679 -10.07175 -9.56332 -9.35294 -9.20678 -8.99580 -8.68261 -8.61037 -7.72763 -7.55381 -7.04138 -4.61139 0.80552 0.97201 2.22157 2.73515 2.91949 2.94135 2.97919 3.03293 3.26816 3.68932 3.73120 3.84821 4.04678 4.34353 4.54796 4.60137 4.63697 4.69596 4.82365 4.92952 5.02449 5.06713 5.36562 5.46163 5.57634 5.61286 5.69953 5.76044 5.88832 5.91877 5.98068 6.05257 6.14856 6.30981 6.34447 6.40421 6.76333 6.81918 6.89562 7.02377 7.06657 7.12887 7.42692 7.64510 7.78495 7.85204 8.06376 8.21764 8.39152 8.62240 8.74647 9.04337 9.87732 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.002547 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.213719 B =10992.075904 C =13253.968196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.104 0.896 4 C 0.050 3.950 5 O -0.302 6.302 6 C 0.165 3.835 7 C -0.221 4.221 8 C -0.051 4.051 9 C -0.196 4.196 10 C 0.139 3.861 11 F -0.135 7.135 12 C -0.190 4.190 13 N -0.736 5.736 14 C 0.574 3.426 15 O -0.576 6.576 16 C -0.286 4.286 17 C -0.062 4.062 18 C -0.178 4.178 19 C 0.129 3.871 20 C -0.442 4.442 21 H 0.085 0.915 22 C 0.074 3.926 23 N -0.770 5.770 24 Si 0.914 3.086 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.262 1.262 28 C -0.240 4.240 29 C -0.022 4.022 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.401 0.599 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.287 0.713 43 H 0.098 0.902 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -0.358 18.862 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.122 0.878 4 C -0.025 4.025 5 O -0.215 6.215 6 C 0.119 3.881 7 C -0.240 4.240 8 C -0.069 4.069 9 C -0.215 4.215 10 C 0.119 3.881 11 F -0.113 7.113 12 C -0.210 4.210 13 N -0.390 5.390 14 C 0.369 3.631 15 O -0.459 6.459 16 C -0.290 4.290 17 C -0.081 4.081 18 C -0.198 4.198 19 C 0.126 3.874 20 C -0.470 4.470 21 H 0.103 0.897 22 C -0.147 4.147 23 N -0.393 5.393 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.259 4.259 29 C -0.041 4.041 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.237 0.763 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.912 0.152 18.711 18.734 hybrid contribution 0.474 -1.174 -0.330 1.308 sum -0.438 -1.021 18.380 18.414 Atomic orbital electron populations 1.22125 0.94866 1.02807 1.02221 1.20883 0.95112 0.96654 0.82826 0.87848 1.23316 0.98508 0.81347 0.99358 1.86129 1.66757 1.26492 1.42104 1.18625 0.92503 0.90171 0.86806 1.21364 1.03144 1.02357 0.97124 1.20777 0.97052 0.92484 0.96558 1.21041 1.01593 0.97956 1.00953 1.17297 0.95417 0.80002 0.95353 1.91524 1.85807 1.38221 1.95772 1.20309 1.06716 0.93233 1.00719 1.45961 1.69551 1.14276 1.09226 1.18597 0.75689 0.85955 0.82859 1.90627 1.53249 1.16536 1.85449 1.18873 1.21595 0.94956 0.93586 1.20480 0.97674 0.92831 0.97093 1.20975 1.06650 1.00359 0.91775 1.17783 0.85981 0.91101 0.92573 1.19825 1.31955 0.91945 1.03277 0.89736 1.26105 0.93766 0.98330 0.96521 1.69736 1.24988 1.11246 1.33364 0.86260 0.81033 0.78159 0.80815 1.18476 1.20033 1.18653 1.20713 1.11641 0.96256 0.97307 1.20358 0.94439 0.97632 0.91650 0.91616 0.92285 0.91676 0.90877 0.90433 0.84705 0.84723 0.84699 0.83730 0.76310 0.89355 0.86224 0.90137 0.88401 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.29 37.16 0.35 -1.70 16 2 C 0.15 1.94 2.98 -67.93 -0.20 1.73 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 4 C 0.05 0.49 4.48 37.16 0.17 0.65 16 5 O -0.30 -3.40 8.99 -19.40 -0.17 -3.58 16 6 C 0.17 1.74 6.68 -39.23 -0.26 1.48 16 7 C -0.22 -1.89 9.04 -39.42 -0.36 -2.25 16 8 C -0.05 -0.38 10.04 -39.62 -0.40 -0.78 16 9 C -0.20 -1.67 10.02 -39.49 -0.40 -2.06 16 10 C 0.14 1.44 7.30 -39.44 -0.29 1.15 16 11 F -0.13 -1.50 17.27 2.25 0.04 -1.46 16 12 C -0.19 -2.06 9.97 -39.37 -0.39 -2.45 16 13 N -0.74 -11.94 5.01 -54.81 -0.27 -12.22 16 14 C 0.57 11.85 7.73 -12.43 -0.10 11.76 16 15 O -0.58 -13.17 15.99 5.29 0.08 -13.09 16 16 C -0.29 -6.47 5.89 -104.73 -0.62 -7.08 16 17 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 18 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 19 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 20 C -0.44 -10.98 9.04 -37.75 -0.34 -11.32 16 21 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 22 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 23 N -0.77 -18.48 10.95 55.56 0.61 -17.87 16 24 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 25 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 26 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 27 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 28 C -0.24 -5.78 9.73 -39.27 -0.38 -6.17 16 29 C -0.02 -0.51 9.52 -39.61 -0.38 -0.88 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.84 7.56 -51.93 -0.39 0.45 16 33 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 34 H 0.08 0.56 7.67 -51.93 -0.40 0.17 16 35 H 0.14 0.90 6.30 -52.48 -0.33 0.57 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.40 6.19 6.38 -40.82 -0.26 5.93 16 40 H 0.09 1.69 6.37 -52.49 -0.33 1.36 16 41 H 0.12 2.98 6.16 -52.49 -0.32 2.65 16 42 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 43 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -28.61 377.66 -9.37 -37.98 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.32 Total: 12.37 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -5.00 Total: -20.04 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.33 Total: -30.09 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.09 Total: -16.67 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.61 -9.37 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097230001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.550 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds