Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47004 * 2 1 4 4 C 1.52993 * 109.47182 * 239.99601 * 2 1 3 5 5 O 1.42901 * 109.47373 * 305.00094 * 4 2 1 6 6 C 1.35898 * 117.00322 * 180.02562 * 5 4 2 7 7 C 1.38778 * 120.03936 * 359.72273 * 6 5 4 8 8 C 1.38133 * 119.98812 * 179.74937 * 7 6 5 9 9 C 1.38243 * 120.08416 * 0.52713 * 8 7 6 10 10 C 1.38478 * 120.08691 * 359.74839 * 9 8 7 11 11 F 1.35102 * 120.00009 * 179.97438 * 10 9 8 12 12 C 1.38391 * 120.00172 * 359.97438 * 10 9 8 13 13 N 1.46510 * 109.46961 * 119.99447 * 2 1 3 14 14 C 1.34767 * 120.00207 * 275.00048 * 13 2 1 15 15 O 1.21589 * 120.00449 * 359.97438 * 14 13 2 16 16 C 1.47639 * 120.00035 * 180.02562 * 14 13 2 17 17 C 1.40008 * 119.89581 * 359.72852 * 16 14 13 18 18 C 1.36327 * 120.10658 * 179.71802 * 17 16 14 19 19 C 1.40881 * 119.88819 * 0.57501 * 18 17 16 20 20 C 1.41116 * 120.10080 * 179.67300 * 19 18 17 21 21 H 1.07999 * 120.00114 * 204.65262 * 20 19 18 22 22 C 1.40234 * 119.99691 * 24.65528 * 20 19 18 23 23 N 1.30644 * 119.99856 * 17.86468 * 22 20 19 24 24 Si 1.86797 * 119.99695 * 197.86023 * 22 20 19 25 25 H 1.48502 * 109.46886 * 90.00100 * 24 22 20 26 26 H 1.48496 * 109.47081 * 209.99612 * 24 22 20 27 27 H 1.48494 * 109.47370 * 330.00506 * 24 22 20 28 28 C 1.40877 * 119.79832 * 359.69662 * 19 18 17 29 29 C 1.36320 * 119.89152 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47171 * 60.00112 * 1 2 3 31 31 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47281 * 300.00218 * 1 2 3 33 33 H 1.09003 * 109.47409 * 65.00166 * 4 2 1 34 34 H 1.09003 * 109.47408 * 184.99883 * 4 2 1 35 35 H 1.07998 * 120.00232 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.95320 * 180.27299 * 8 7 6 37 37 H 1.08001 * 119.96091 * 179.76685 * 9 8 7 38 38 H 1.07999 * 120.03581 * 180.02562 * 12 10 9 39 39 H 0.97004 * 119.99414 * 95.00481 * 13 2 1 40 40 H 1.08004 * 119.94946 * 359.97438 * 17 16 14 41 41 H 1.08004 * 120.05034 * 180.24621 * 18 17 16 42 42 H 0.97003 * 119.99869 * 179.97438 * 23 22 20 43 43 H 1.08008 * 120.05893 * 179.97438 * 28 19 18 44 44 H 1.08004 * 119.95201 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2491 5 8 1.4702 -2.0304 -1.3093 6 6 1.8234 -2.8092 -2.3655 7 6 2.6962 -2.3207 -3.3276 8 6 3.0586 -3.1150 -4.3980 9 6 2.5444 -4.3926 -4.5184 10 6 1.6687 -4.8813 -3.5633 11 9 1.1668 -6.1299 -3.6829 12 6 1.3077 -4.0906 -2.4864 13 7 2.0183 -0.6905 1.1963 14 6 2.1470 -0.0182 2.3572 15 8 1.8583 1.1617 2.4117 16 6 2.6396 -0.7139 3.5626 17 6 2.9671 -2.0737 3.4986 18 6 3.4278 -2.7190 4.6076 19 6 3.5627 -2.0183 5.8223 20 6 4.0326 -2.6836 6.9747 21 1 3.7760 -2.3114 7.9555 22 6 4.8329 -3.8280 6.8462 23 7 5.4307 -4.0831 5.7129 24 14 5.0441 -4.9873 8.2955 25 1 3.9846 -6.0271 8.2561 26 1 6.3776 -5.6364 8.2199 27 1 4.9379 -4.2203 9.5626 28 6 3.2265 -0.6516 5.8832 29 6 2.7730 -0.0132 4.7674 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 3.1263 -0.7995 -1.2055 35 1 3.0949 -1.3211 -3.2374 36 1 3.7413 -2.7359 -5.1441 37 1 2.8261 -5.0105 -5.3581 38 1 0.6252 -4.4713 -1.7410 39 1 2.2490 -1.6317 1.1527 40 1 2.8584 -2.6113 2.5682 41 1 3.6839 -3.7670 4.5562 42 1 5.9846 -4.8745 5.6242 43 1 3.3279 -0.1104 6.8124 44 1 2.5147 1.0345 4.8130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097230003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -85.641432 kcal Electronic energy + Delta-G solvation = -28197.187373 eV Core-core repulsion = 23993.496803 eV Total energy + Delta-G solvation = -4203.690570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.17924 -40.50552 -39.21255 -37.76038 -37.08598 -34.99131 -33.88026 -31.60327 -30.99868 -30.03692 -29.56787 -29.40552 -27.05213 -25.89839 -23.31096 -23.01708 -22.19557 -21.09685 -20.55823 -19.72617 -18.78850 -17.54169 -17.25275 -16.65317 -16.54000 -16.31932 -16.24511 -15.80430 -15.51073 -15.23011 -14.61491 -14.16878 -14.11976 -14.00607 -13.85472 -13.43330 -13.15225 -13.05680 -12.80731 -12.66494 -12.36647 -12.20906 -12.10044 -11.88614 -11.78445 -11.41141 -11.32823 -11.26241 -11.17702 -11.03690 -10.94742 -10.65564 -10.04743 -9.56714 -9.36452 -9.20531 -8.99647 -8.68656 -8.60821 -7.72965 -7.55603 -7.04536 -4.61339 0.80751 0.97495 2.21475 2.73502 2.91280 2.95546 2.97763 3.03082 3.27096 3.68740 3.73327 3.84522 4.04752 4.34632 4.54515 4.60354 4.64026 4.69830 4.82897 4.93030 5.02674 5.06852 5.36270 5.45859 5.57546 5.61563 5.69214 5.76108 5.88883 5.90811 5.98497 6.05077 6.14334 6.30696 6.33237 6.40261 6.76177 6.81849 6.89284 7.02225 7.06487 7.12641 7.42712 7.64266 7.78298 7.85331 8.06212 8.21528 8.39229 8.62231 8.74430 9.04095 9.87418 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.002550 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.664499 B =10978.372774 C =13242.664447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.104 0.896 4 C 0.050 3.950 5 O -0.302 6.302 6 C 0.165 3.835 7 C -0.221 4.221 8 C -0.050 4.050 9 C -0.196 4.196 10 C 0.139 3.861 11 F -0.135 7.135 12 C -0.190 4.190 13 N -0.736 5.736 14 C 0.574 3.426 15 O -0.576 6.576 16 C -0.285 4.285 17 C -0.062 4.062 18 C -0.178 4.178 19 C 0.129 3.871 20 C -0.442 4.442 21 H 0.085 0.915 22 C 0.074 3.926 23 N -0.771 5.771 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.259 1.259 28 C -0.239 4.239 29 C -0.022 4.022 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.401 0.599 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.287 0.713 43 H 0.098 0.902 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -1.141 -18.066 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.122 0.878 4 C -0.025 4.025 5 O -0.215 6.215 6 C 0.119 3.881 7 C -0.240 4.240 8 C -0.068 4.068 9 C -0.215 4.215 10 C 0.119 3.881 11 F -0.113 7.113 12 C -0.210 4.210 13 N -0.390 5.390 14 C 0.369 3.631 15 O -0.459 6.459 16 C -0.290 4.290 17 C -0.081 4.081 18 C -0.197 4.197 19 C 0.125 3.875 20 C -0.470 4.470 21 H 0.103 0.897 22 C -0.147 4.147 23 N -0.394 5.394 24 Si 0.738 3.262 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.183 1.183 28 C -0.259 4.259 29 C -0.041 4.041 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.237 0.763 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.767 -0.549 -17.988 18.386 hybrid contribution 0.420 -1.197 0.337 1.313 sum -3.346 -1.746 -17.651 18.050 Atomic orbital electron populations 1.22122 0.94877 1.02764 1.02220 1.20882 0.95081 0.96684 0.82835 0.87844 1.23317 0.98561 0.81327 0.99342 1.86122 1.66712 1.26494 1.42190 1.18626 0.92542 0.90160 0.86774 1.21370 1.03250 1.02234 0.97105 1.20778 0.96987 0.92465 0.96616 1.21039 1.01544 0.97992 1.00951 1.17298 0.95431 0.80001 0.95359 1.91522 1.85787 1.38257 1.95771 1.20297 1.06702 0.93272 1.00722 1.45963 1.69547 1.14283 1.09217 1.18595 0.75698 0.85947 0.82860 1.90627 1.53279 1.16476 1.85469 1.18875 1.21480 0.95145 0.93471 1.20483 0.97457 0.93036 0.97114 1.20978 1.05457 1.00197 0.93098 1.17790 0.86360 0.90459 0.92855 1.19866 1.25164 1.07343 0.94609 0.89685 1.26105 0.93478 0.97723 0.97415 1.69743 1.19536 1.24125 1.25993 0.86203 0.78516 0.80082 0.81449 1.18912 1.20012 1.18277 1.20715 1.12717 0.94892 0.97559 1.20361 0.94225 0.97760 0.91751 0.92274 0.91701 0.91636 0.90431 0.90838 0.84694 0.84713 0.84695 0.83763 0.76306 0.89350 0.86217 0.90217 0.88392 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.29 37.16 0.35 -1.66 16 2 C 0.15 1.93 2.98 -67.93 -0.20 1.73 16 3 H 0.10 1.39 7.58 -51.93 -0.39 0.99 16 4 C 0.05 0.49 4.48 37.15 0.17 0.66 16 5 O -0.30 -3.40 8.99 -19.42 -0.17 -3.57 16 6 C 0.17 1.74 6.69 -39.22 -0.26 1.48 16 7 C -0.22 -1.91 9.04 -39.42 -0.36 -2.27 16 8 C -0.05 -0.38 10.04 -39.62 -0.40 -0.78 16 9 C -0.20 -1.67 10.02 -39.49 -0.40 -2.07 16 10 C 0.14 1.43 7.30 -39.44 -0.29 1.14 16 11 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 12 C -0.19 -2.05 9.97 -39.37 -0.39 -2.44 16 13 N -0.74 -11.93 5.01 -54.82 -0.27 -12.21 16 14 C 0.57 11.85 7.73 -12.43 -0.10 11.75 16 15 O -0.58 -13.16 15.98 5.29 0.08 -13.08 16 16 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 17 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 18 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 19 C 0.13 3.27 5.57 -106.81 -0.60 2.67 16 20 C -0.44 -10.97 9.04 -37.74 -0.34 -11.32 16 21 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 22 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 23 N -0.77 -18.43 10.95 55.56 0.61 -17.83 16 24 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 26 H -0.28 -5.09 7.11 56.52 0.40 -4.68 16 27 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 28 C -0.24 -5.77 9.73 -39.27 -0.38 -6.16 16 29 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 34 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.40 6.19 6.38 -40.82 -0.26 5.93 16 40 H 0.09 1.69 6.37 -52.48 -0.33 1.36 16 41 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 42 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 43 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 44 H 0.10 2.27 7.63 -52.48 -0.40 1.87 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -28.56 377.66 -9.37 -37.93 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.32 Total: 12.30 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -5.00 Total: -20.02 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.33 Total: -30.03 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.09 Total: -16.65 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.56 -9.37 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097230003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.711 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds