Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47218 * 2 1 4 4 C 1.53002 * 109.47306 * 120.00761 * 2 1 3 5 5 C 1.53001 * 117.49540 * 8.61614 * 4 2 1 6 6 C 1.52997 * 60.00153 * 252.51673 * 5 4 2 7 7 N 1.46499 * 109.47218 * 240.00308 * 2 1 3 8 8 C 1.46505 * 120.00287 * 305.06561 * 7 2 1 9 9 C 1.50703 * 109.46719 * 269.99895 * 8 7 2 10 10 H 1.08005 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00058 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99863 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00317 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46965 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47196 * 119.99817 * 13 11 9 16 16 H 1.48505 * 109.47060 * 240.00002 * 13 11 9 17 17 C 1.34781 * 120.00201 * 125.05620 * 7 2 1 18 18 O 1.21577 * 120.00167 * 185.66894 * 17 7 2 19 19 C 1.47587 * 119.99768 * 5.68073 * 17 7 2 20 20 C 1.39777 * 120.11456 * 54.30818 * 19 17 7 21 21 C 1.37964 * 119.96640 * 180.02562 * 20 19 17 22 22 F 1.35098 * 119.90376 * 180.02562 * 21 20 19 23 23 C 1.38838 * 120.19278 * 0.02562 * 21 20 19 24 24 F 1.35100 * 119.88107 * 179.97438 * 23 21 20 25 25 C 1.38830 * 120.23022 * 359.97438 * 23 21 20 26 26 O 1.36024 * 119.98522 * 180.02562 * 25 23 21 27 27 C 1.38645 * 120.03095 * 0.02659 * 25 23 21 28 28 F 1.35099 * 120.09845 * 179.72527 * 27 25 23 29 29 H 1.09002 * 109.47679 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47537 * 299.99658 * 1 2 3 31 31 H 1.09006 * 109.47309 * 59.99746 * 1 2 3 32 32 H 1.08991 * 115.55283 * 154.32918 * 4 2 1 33 33 H 1.08996 * 117.50194 * 0.02562 * 5 4 2 34 34 H 1.09008 * 117.49431 * 145.02243 * 5 4 2 35 35 H 1.08999 * 117.49627 * 252.51323 * 6 5 4 36 36 H 1.08996 * 117.52217 * 107.48433 * 6 5 4 37 37 H 1.09001 * 109.47222 * 29.99020 * 8 7 2 38 38 H 1.09000 * 109.47559 * 149.99736 * 8 7 2 39 39 H 0.97001 * 119.99841 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.01431 * 0.04349 * 20 19 17 41 41 H 0.96704 * 114.00053 * 269.98043 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.0103 -1.4543 2.1115 6 6 1.6356 -0.1497 2.6095 7 7 2.0183 -0.6905 -1.1962 8 6 1.5753 -2.0567 -1.4856 9 6 2.5199 -3.0382 -0.8410 10 1 3.3658 -2.6801 -0.2729 11 6 2.3042 -4.3932 -0.9764 12 7 1.2738 -4.8292 -1.6677 13 14 3.4754 -5.6099 -0.1780 14 1 4.5459 -4.8698 0.5374 15 1 2.7283 -6.4560 0.7868 16 1 4.0836 -6.4709 -1.2240 17 6 2.8750 -0.0690 -2.0306 18 8 3.1999 -0.6003 -3.0747 19 6 3.4189 1.2566 -1.6767 20 6 4.0656 1.4450 -0.4519 21 6 4.5724 2.6855 -0.1239 22 9 5.1977 2.8661 1.0600 23 6 4.4418 3.7489 -1.0070 24 9 4.9400 4.9611 -0.6791 25 6 3.8010 3.5708 -2.2256 26 8 3.6763 4.6159 -3.0872 27 6 3.2881 2.3282 -2.5648 28 9 2.6594 2.1547 -3.7479 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.0323 -1.1642 1.1641 33 1 -0.0303 -1.4228 1.7888 34 1 1.3252 -2.3797 2.5939 35 1 2.3619 -0.2169 3.4196 36 1 1.0068 0.7405 2.6146 37 1 0.5710 -2.2048 -1.0886 38 1 1.5668 -2.2152 -2.5640 39 1 1.1223 -5.7825 -1.7633 40 1 4.1687 0.6198 0.2372 41 1 2.8693 5.1341 -2.9628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097374749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = -144.921008 kcal Electronic energy + Delta-G solvation = -31341.044058 eV Core-core repulsion = 26580.553403 eV Total energy + Delta-G solvation = -4760.490655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.81871 -49.14484 -48.88072 -40.27486 -39.06839 -37.68300 -36.81896 -34.56717 -32.73200 -30.88641 -30.06471 -29.72443 -27.42371 -24.74028 -24.42495 -23.46076 -22.48419 -22.01915 -20.37088 -19.42182 -18.51580 -18.41185 -18.21236 -17.24997 -16.84318 -16.69246 -16.49239 -16.01234 -15.82112 -15.70245 -15.27542 -15.03034 -14.87761 -14.71997 -14.45240 -14.29723 -14.07132 -13.65103 -13.31879 -13.10724 -12.67159 -12.29279 -12.26813 -11.97774 -11.80247 -11.43042 -11.35615 -11.29833 -11.14149 -10.98359 -10.85524 -10.58324 -10.38609 -9.93798 -9.62354 -9.60469 -9.44676 -9.12344 -8.93520 -8.47288 -7.86905 -6.09468 -4.12795 0.17748 0.36514 2.49029 2.91212 3.12334 3.25420 3.34272 3.35554 3.50509 3.61472 3.76041 4.05938 4.11579 4.27254 4.35295 4.43742 4.93957 5.00537 5.01442 5.13327 5.25695 5.31291 5.34813 5.42126 5.46897 5.52864 5.59840 5.72065 5.85013 5.95385 6.11500 6.13768 6.28165 6.44004 6.47452 6.61115 6.95695 7.00056 7.31711 7.40093 7.85651 8.15182 8.16446 8.66161 8.90518 9.51084 10.99078 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.004121 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.547064 B = 6793.073161 C = 7451.012010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.162 3.838 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.191 4.191 7 N -0.575 5.575 8 C 0.246 3.754 9 C -0.518 4.518 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.550 3.450 18 O -0.513 6.513 19 C -0.114 4.114 20 C -0.073 4.073 21 C 0.073 3.927 22 F -0.117 7.117 23 C 0.080 3.920 24 F -0.112 7.112 25 C 0.062 3.938 26 O -0.467 6.467 27 C 0.138 3.862 28 F -0.103 7.103 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.168 0.832 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 17.474 6.311 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.198 4.198 6 C -0.228 4.228 7 N -0.306 5.306 8 C 0.128 3.872 9 C -0.556 4.556 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.334 3.666 18 O -0.389 6.389 19 C -0.119 4.119 20 C -0.093 4.093 21 C 0.052 3.948 22 F -0.095 7.095 23 C 0.059 3.941 24 F -0.090 7.090 25 C 0.015 3.985 26 O -0.278 6.278 27 C 0.117 3.883 28 F -0.081 7.081 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.186 0.814 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.503 16.840 5.464 17.711 hybrid contribution 0.366 -0.366 0.732 0.897 sum 0.868 16.474 6.197 17.622 Atomic orbital electron populations 1.22266 0.94915 1.03734 1.01394 1.20626 0.94439 0.94857 0.84342 0.90303 1.22610 1.01028 1.03243 0.89864 1.22950 0.98805 0.95138 1.02907 1.23007 1.04342 0.98038 0.97460 1.48272 1.43248 1.17269 1.21780 1.19396 0.95631 0.73974 0.98237 1.21362 1.11051 0.90611 1.32609 0.92354 1.24878 0.95448 0.98203 0.95334 1.69932 1.28276 1.14585 1.40414 0.86517 0.80961 0.81267 0.79123 1.19855 1.21024 1.20955 1.17615 0.80753 0.83409 0.84821 1.90846 1.58743 1.65696 1.23649 1.20253 1.02196 0.95583 0.93879 1.21248 0.95722 0.96263 0.96047 1.17209 1.00780 0.93231 0.83545 1.91581 1.79691 1.95709 1.42509 1.17750 1.01677 0.81412 0.93290 1.91559 1.84791 1.40430 1.92250 1.17764 1.02871 0.88228 0.89670 1.84966 1.47099 1.41037 1.54650 1.17647 0.95426 0.92187 0.83081 1.91613 1.78575 1.95598 1.42273 0.90330 0.91862 0.92601 0.87040 0.88378 0.89031 0.89265 0.89323 0.94130 0.93680 0.92781 0.81417 0.74502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 7.66 37.15 0.28 -1.96 16 2 C 0.16 2.41 2.31 -67.93 -0.16 2.25 16 3 H 0.08 1.01 5.21 -51.93 -0.27 0.74 16 4 C -0.15 -2.18 4.24 -90.62 -0.38 -2.57 16 5 C -0.16 -2.29 9.57 -26.73 -0.26 -2.55 16 6 C -0.19 -2.23 9.90 -26.73 -0.26 -2.50 16 7 N -0.58 -11.14 2.39 -168.67 -0.40 -11.54 16 8 C 0.25 5.91 4.89 -5.19 -0.03 5.88 16 9 C -0.52 -13.41 8.49 -34.44 -0.29 -13.70 16 10 H 0.06 1.50 6.81 -52.48 -0.36 1.14 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 13 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.55 10.95 6.85 -12.44 -0.09 10.86 16 18 O -0.51 -12.57 16.42 5.30 0.09 -12.48 16 19 C -0.11 -1.74 4.58 -104.93 -0.48 -2.22 16 20 C -0.07 -0.94 7.70 -39.11 -0.30 -1.24 16 21 C 0.07 0.86 7.29 -39.46 -0.29 0.57 16 22 F -0.12 -1.38 17.17 2.25 0.04 -1.34 16 23 C 0.08 0.92 7.32 -39.14 -0.29 0.64 16 24 F -0.11 -1.30 17.01 2.25 0.04 -1.27 16 25 C 0.06 0.73 6.71 -39.21 -0.26 0.47 16 26 O -0.47 -4.77 13.22 -19.82 -0.26 -5.04 16 27 C 0.14 1.96 7.28 -38.85 -0.28 1.67 16 28 F -0.10 -1.64 16.50 2.25 0.04 -1.61 16 29 H 0.08 1.22 5.35 -51.93 -0.28 0.94 16 30 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.85 6.89 -51.93 -0.36 1.50 16 33 H 0.10 1.36 5.85 -51.93 -0.30 1.05 16 34 H 0.09 1.38 8.14 -51.92 -0.42 0.95 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.90 7.61 -51.93 -0.40 0.50 16 37 H 0.04 0.98 6.17 -51.93 -0.32 0.66 16 38 H 0.05 1.26 7.35 -51.93 -0.38 0.88 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.17 2.07 6.93 -52.49 -0.36 1.71 16 41 H 0.40 1.94 9.07 45.56 0.41 2.35 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -31.43 354.13 -5.97 -37.40 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.39 Total: 1.94 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.18 Total: -2.79 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.33 Total: -36.09 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.17 Total: -17.52 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.11 Total: -4.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.43 -5.97 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097374749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.519 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds