Wall clock time and date at job start Tue Mar 31 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47218 * 2 1 4 4 C 1.53002 * 109.47306 * 120.00761 * 2 1 3 5 5 C 1.53001 * 117.49540 * 8.61614 * 4 2 1 6 6 C 1.52997 * 60.00153 * 252.51673 * 5 4 2 7 7 N 1.46499 * 109.47218 * 240.00308 * 2 1 3 8 8 C 1.46505 * 120.00287 * 305.06561 * 7 2 1 9 9 C 1.50703 * 109.46719 * 269.99895 * 8 7 2 10 10 H 1.08005 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00058 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99863 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00317 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46965 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47196 * 119.99817 * 13 11 9 16 16 H 1.48505 * 109.47060 * 240.00002 * 13 11 9 17 17 C 1.34781 * 120.00201 * 125.05620 * 7 2 1 18 18 O 1.21577 * 120.00167 * 185.66894 * 17 7 2 19 19 C 1.47587 * 119.99768 * 5.68073 * 17 7 2 20 20 C 1.39777 * 120.11456 * 54.30818 * 19 17 7 21 21 C 1.37964 * 119.96640 * 180.02562 * 20 19 17 22 22 F 1.35098 * 119.90376 * 180.02562 * 21 20 19 23 23 C 1.38838 * 120.19278 * 0.02562 * 21 20 19 24 24 F 1.35100 * 119.88107 * 179.97438 * 23 21 20 25 25 C 1.38830 * 120.23022 * 359.97438 * 23 21 20 26 26 O 1.36024 * 119.98522 * 180.02562 * 25 23 21 27 27 C 1.38645 * 120.03095 * 0.02659 * 25 23 21 28 28 F 1.35099 * 120.09845 * 179.72527 * 27 25 23 29 29 H 1.09002 * 109.47679 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47537 * 299.99658 * 1 2 3 31 31 H 1.09006 * 109.47309 * 59.99746 * 1 2 3 32 32 H 1.08991 * 115.55283 * 154.32918 * 4 2 1 33 33 H 1.08996 * 117.50194 * 0.02562 * 5 4 2 34 34 H 1.09008 * 117.49431 * 145.02243 * 5 4 2 35 35 H 1.08999 * 117.49627 * 252.51323 * 6 5 4 36 36 H 1.08996 * 117.52217 * 107.48433 * 6 5 4 37 37 H 1.09001 * 109.47222 * 29.99020 * 8 7 2 38 38 H 1.09000 * 109.47559 * 149.99736 * 8 7 2 39 39 H 0.97001 * 119.99841 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.01431 * 0.04349 * 20 19 17 41 41 H 0.96704 * 114.00053 * 269.98043 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.0103 -1.4543 2.1115 6 6 1.6356 -0.1497 2.6095 7 7 2.0183 -0.6905 -1.1962 8 6 1.5753 -2.0567 -1.4856 9 6 2.5199 -3.0382 -0.8410 10 1 3.3658 -2.6801 -0.2729 11 6 2.3042 -4.3932 -0.9764 12 7 1.2738 -4.8292 -1.6677 13 14 3.4754 -5.6099 -0.1780 14 1 4.5459 -4.8698 0.5374 15 1 2.7283 -6.4560 0.7868 16 1 4.0836 -6.4709 -1.2240 17 6 2.8750 -0.0690 -2.0306 18 8 3.1999 -0.6003 -3.0747 19 6 3.4189 1.2566 -1.6767 20 6 4.0656 1.4450 -0.4519 21 6 4.5724 2.6855 -0.1239 22 9 5.1977 2.8661 1.0600 23 6 4.4418 3.7489 -1.0070 24 9 4.9400 4.9611 -0.6791 25 6 3.8010 3.5708 -2.2256 26 8 3.6763 4.6159 -3.0872 27 6 3.2881 2.3282 -2.5648 28 9 2.6594 2.1547 -3.7479 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.0323 -1.1642 1.1641 33 1 -0.0303 -1.4228 1.7888 34 1 1.3252 -2.3797 2.5939 35 1 2.3619 -0.2169 3.4196 36 1 1.0068 0.7405 2.6146 37 1 0.5710 -2.2048 -1.0886 38 1 1.5668 -2.2152 -2.5640 39 1 1.1223 -5.7825 -1.7633 40 1 4.1687 0.6198 0.2372 41 1 2.8693 5.1341 -2.9628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097374749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:46 Heat of formation + Delta-G solvation = -164.827434 kcal Electronic energy + Delta-G solvation = -31341.907266 eV Core-core repulsion = 26580.553403 eV Total energy + Delta-G solvation = -4761.353863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.77134 -50.30934 -49.83051 -41.59802 -40.16724 -38.95268 -37.88268 -36.11878 -34.67426 -32.08175 -31.09672 -31.06652 -29.18884 -25.98161 -25.92206 -24.50572 -24.00682 -23.04296 -21.68766 -20.53824 -19.58967 -19.45311 -19.37436 -18.58062 -18.31251 -18.03686 -17.72497 -17.34896 -16.94165 -16.82134 -16.54667 -16.25114 -16.10941 -15.86211 -15.78328 -15.58832 -15.23830 -14.89048 -14.76097 -14.38988 -14.07774 -13.83224 -13.38503 -13.33255 -13.07921 -12.96032 -12.83529 -12.57410 -12.51633 -12.39150 -12.28118 -12.17596 -11.91553 -11.48134 -11.16307 -10.97802 -10.72685 -10.57963 -10.19171 -9.99994 -9.53775 -8.17381 -6.27391 -0.88558 -0.62622 1.31168 1.37201 1.40672 1.49945 1.75818 1.86020 2.15232 2.41710 2.60683 2.78790 2.97248 3.04373 3.12867 3.20847 3.27108 3.89130 3.90764 3.97261 4.02280 4.22934 4.29628 4.30841 4.39797 4.43898 4.53675 4.58671 4.82130 4.96065 5.00291 5.07084 5.14028 5.18594 5.27169 5.33869 5.43150 5.49629 5.58130 5.83069 6.10856 6.38784 6.56267 6.78338 7.12676 7.41454 8.90986 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.004121 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.547064 B = 6793.073161 C = 7451.012010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.108 0.892 4 C -0.169 4.169 5 C -0.181 4.181 6 C -0.147 4.147 7 N -0.575 5.575 8 C 0.264 3.736 9 C -0.517 4.517 10 H 0.058 0.942 11 C 0.012 3.988 12 N -0.929 5.929 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.288 1.288 17 C 0.545 3.455 18 O -0.574 6.574 19 C -0.124 4.124 20 C -0.065 4.065 21 C 0.091 3.909 22 F -0.111 7.111 23 C 0.095 3.905 24 F -0.106 7.106 25 C 0.088 3.912 26 O -0.473 6.473 27 C 0.127 3.873 28 F -0.119 7.119 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.035 0.965 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.172 0.828 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 20.199 8.847 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.126 0.874 4 C -0.188 4.188 5 C -0.218 4.218 6 C -0.185 4.185 7 N -0.304 5.304 8 C 0.144 3.856 9 C -0.556 4.556 10 H 0.076 0.924 11 C -0.187 4.187 12 N -0.569 5.569 13 Si 0.781 3.219 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.214 1.214 17 C 0.332 3.668 18 O -0.455 6.455 19 C -0.129 4.129 20 C -0.084 4.084 21 C 0.070 3.930 22 F -0.090 7.090 23 C 0.073 3.927 24 F -0.085 7.085 25 C 0.040 3.960 26 O -0.287 6.287 27 C 0.105 3.895 28 F -0.097 7.097 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.053 0.947 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.190 0.810 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.226 19.620 8.055 21.245 hybrid contribution 0.130 -1.083 -0.063 1.092 sum 1.356 18.537 7.992 20.232 Atomic orbital electron populations 1.22251 0.93823 1.02597 1.03234 1.20978 0.95301 0.95705 0.82454 0.87449 1.22483 1.00019 1.04924 0.91382 1.22980 0.98793 0.96265 1.03782 1.23099 1.03208 0.97130 0.95028 1.48233 1.43015 1.15844 1.23337 1.18814 0.95303 0.76674 0.94859 1.21591 1.10948 0.91133 1.31907 0.92367 1.25679 0.96934 1.00109 0.95962 1.70052 1.30026 1.14921 1.41936 0.85547 0.79174 0.78994 0.78201 1.18928 1.19949 1.21438 1.18246 0.79939 0.84813 0.83803 1.90800 1.60790 1.67712 1.26175 1.19712 1.04226 0.93350 0.95612 1.21107 0.95329 0.96946 0.95002 1.16970 0.99929 0.92565 0.83493 1.91605 1.79481 1.95605 1.42264 1.17635 1.00847 0.81386 0.92811 1.91587 1.84600 1.40140 1.92133 1.17488 1.01399 0.87683 0.89465 1.84916 1.48879 1.40565 1.54345 1.17769 0.96281 0.92930 0.82480 1.91571 1.79100 1.95782 1.43276 0.92922 0.88194 0.92540 0.89323 0.88264 0.90531 0.87794 0.86589 0.94675 0.98635 0.92747 0.81039 0.71446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 7.66 71.98 0.55 -3.66 16 2 C 0.16 4.57 2.31 44.99 0.10 4.67 16 3 H 0.11 2.49 5.21 -2.39 -0.01 2.48 16 4 C -0.17 -4.77 4.24 -10.79 -0.05 -4.82 16 5 C -0.18 -4.96 9.57 30.59 0.29 -4.67 16 6 C -0.15 -2.92 9.90 30.59 0.30 -2.62 16 7 N -0.58 -23.07 2.39 -805.82 -1.92 -25.00 16 8 C 0.26 13.45 4.89 85.63 0.42 13.86 16 9 C -0.52 -27.82 8.49 25.60 0.22 -27.60 16 10 H 0.06 3.07 6.81 -2.91 -0.02 3.05 16 11 C 0.01 0.65 5.46 84.65 0.46 1.11 16 12 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 13 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 17 C 0.55 22.55 6.85 86.71 0.59 23.14 16 18 O -0.57 -29.95 16.42 -3.96 -0.07 -30.01 16 19 C -0.12 -3.73 4.58 -20.06 -0.09 -3.82 16 20 C -0.06 -1.52 7.70 22.58 0.17 -1.34 16 21 C 0.09 1.83 7.29 22.35 0.16 2.00 16 22 F -0.11 -2.22 17.17 44.97 0.77 -1.44 16 23 C 0.09 1.85 7.32 22.56 0.17 2.01 16 24 F -0.11 -2.05 17.01 44.97 0.76 -1.29 16 25 C 0.09 1.83 6.71 22.51 0.15 1.98 16 26 O -0.47 -8.19 13.22 -93.82 -1.24 -9.43 16 27 C 0.13 3.46 7.28 22.74 0.17 3.63 16 28 F -0.12 -3.85 16.50 44.97 0.74 -3.11 16 29 H 0.05 1.66 5.35 -2.39 -0.01 1.64 16 30 H 0.10 1.85 7.07 -2.39 -0.02 1.84 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.09 2.93 6.89 -2.39 -0.02 2.91 16 33 H 0.10 2.67 5.85 -2.39 -0.01 2.65 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 1.72 7.61 -2.39 -0.02 1.70 16 37 H 0.04 1.82 6.17 -2.39 -0.01 1.80 16 38 H 0.00 -0.27 7.35 -2.39 -0.02 -0.29 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.17 3.94 6.93 -2.91 -0.02 3.92 16 41 H 0.42 2.62 9.07 -74.05 -0.67 1.95 16 Total: -1.00 -72.25 354.13 5.44 -66.81 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.46 Total: 8.14 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 3.62 Total: 3.88 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.64 Total: -79.34 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.31 Total: -39.44 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 2.28 Total: -5.84 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -72.25 5.44 -66.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097374749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.018 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds