Wall clock time and date at job start Tue Mar 31 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86797 * 120.00581 * 2 1 4 4 H 1.48495 * 109.47263 * 239.99978 * 3 2 1 5 5 H 1.48500 * 109.46686 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47527 * 119.99667 * 3 2 1 7 7 C 1.39867 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99941 * 197.95369 * 7 2 1 9 9 C 1.41139 * 119.99976 * 17.94602 * 7 2 1 10 10 C 1.40887 * 120.15598 * 204.60284 * 9 7 2 11 11 C 1.36335 * 119.83513 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16330 * 0.02562 * 11 10 9 13 13 N 1.38865 * 119.84493 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99755 * 179.97438 * 13 12 11 15 15 C 1.53119 * 109.52367 * 274.87491 * 14 13 12 16 16 C 1.53037 * 109.27428 * 182.51052 * 15 14 13 17 17 N 1.46846 * 109.58163 * 59.08033 * 16 15 14 18 18 C 1.46893 * 111.00371 * 174.19034 * 17 16 15 19 19 C 1.53003 * 109.47607 * 294.21448 * 18 17 16 20 20 C 1.52997 * 109.47307 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.46942 * 60.00026 * 20 19 18 22 22 F 1.39897 * 109.47041 * 179.97438 * 20 19 18 23 23 F 1.39901 * 109.47109 * 299.99965 * 20 19 18 24 24 C 1.46844 * 111.19556 * 298.29536 * 17 16 15 25 25 C 1.53034 * 109.52624 * 61.73796 * 24 17 16 26 26 C 1.39570 * 120.31355 * 0.25713 * 12 11 10 27 27 C 1.36344 * 120.15929 * 359.47895 * 26 12 11 28 28 H 0.97003 * 119.99420 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.08234 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.92330 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99350 * 0.02562 * 13 12 11 32 32 H 1.08996 * 109.52419 * 35.00452 * 14 13 12 33 33 H 1.09005 * 109.50180 * 302.38687 * 15 14 13 34 34 H 1.08999 * 109.50372 * 62.49618 * 15 14 13 35 35 H 1.09004 * 109.40975 * 299.06177 * 16 15 14 36 36 H 1.09003 * 109.45570 * 179.12539 * 16 15 14 37 37 H 1.09002 * 109.46745 * 54.21213 * 18 17 16 38 38 H 1.09000 * 109.47312 * 174.21205 * 18 17 16 39 39 H 1.08996 * 109.46403 * 300.00190 * 19 18 17 40 40 H 1.09000 * 109.46983 * 59.99555 * 19 18 17 41 41 H 1.08997 * 109.46555 * 301.71791 * 24 17 16 42 42 H 1.09000 * 109.45094 * 181.75193 * 24 17 16 43 43 H 1.09005 * 109.50110 * 180.87746 * 25 24 17 44 44 H 1.09001 * 109.50463 * 60.76321 * 25 24 17 45 45 H 1.08000 * 119.91996 * 179.72534 * 26 12 11 46 46 H 1.08000 * 120.07936 * 180.23278 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 3.0969 1.6962 -1.2124 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3540 -2.4040 -0.3755 10 6 1.8265 -3.6473 0.0893 11 6 1.1898 -4.7953 -0.2785 12 6 0.0729 -4.7412 -1.1138 13 7 -0.5702 -5.9147 -1.4847 14 6 -1.7431 -5.8617 -2.3609 15 6 -2.9991 -5.6161 -1.5202 16 6 -4.2275 -5.6242 -2.4330 17 7 -4.3209 -6.9182 -3.1210 18 6 -5.5628 -7.0120 -3.8998 19 6 -6.7621 -7.0112 -2.9496 20 6 -8.0556 -7.1083 -3.7609 21 9 -8.0513 -8.2927 -4.5055 22 9 -9.1521 -7.1082 -2.8920 23 9 -8.1462 -6.0133 -4.6269 24 6 -3.1472 -7.1532 -3.9716 25 6 -1.8867 -7.1924 -3.1045 26 6 -0.3971 -3.5135 -1.5828 27 6 0.2265 -2.3570 -1.2188 28 1 -0.4849 0.8401 -0.0004 29 1 2.6908 -3.6907 0.7353 30 1 1.5510 -5.7492 0.0766 31 1 -0.2432 -6.7694 -1.1630 32 1 -1.6232 -5.0528 -3.0815 33 1 -3.0968 -6.4039 -0.7732 34 1 -2.9206 -4.6496 -1.0224 35 1 -4.1361 -4.8266 -3.1703 36 1 -5.1250 -5.4651 -1.8353 37 1 -5.6336 -6.1590 -4.5748 38 1 -5.5593 -7.9349 -4.4796 39 1 -6.6912 -7.8641 -2.2746 40 1 -6.7656 -6.0883 -2.3697 41 1 -3.0608 -6.3486 -4.7017 42 1 -3.2602 -8.1046 -4.4913 43 1 -1.0141 -7.3513 -3.7381 44 1 -1.9664 -8.0057 -2.3832 45 1 -1.2592 -3.4794 -2.2325 46 1 -0.1406 -1.4074 -1.5795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097376928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:30 Heat of formation + Delta-G solvation = -137.145337 kcal Electronic energy + Delta-G solvation = -29345.373916 eV Core-core repulsion = 24818.772195 eV Total energy + Delta-G solvation = -4526.601720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.43178 -47.92996 -47.90894 -39.54633 -37.83007 -35.74772 -33.82806 -32.62885 -30.97031 -30.52067 -29.44895 -28.23002 -25.81251 -24.34379 -23.64670 -22.79362 -21.83470 -21.10837 -20.14316 -19.48667 -18.87865 -18.73097 -17.74579 -17.21486 -16.23433 -16.00653 -15.65593 -15.10520 -14.96764 -14.88164 -14.75520 -14.48840 -14.33081 -14.07145 -14.06015 -13.91331 -13.77495 -13.71822 -13.46976 -12.79399 -12.60810 -12.44689 -12.28360 -12.08413 -12.00268 -11.81305 -11.64451 -11.50875 -11.25230 -11.19735 -11.01281 -10.76926 -10.64784 -10.39565 -10.33419 -9.70345 -9.28496 -9.21803 -8.64753 -8.52288 -7.49725 -6.64717 -6.38959 -4.03415 2.39104 2.92620 3.09573 3.13684 3.17009 3.27128 3.35708 3.62053 3.70831 3.89510 4.04910 4.21157 4.44195 4.56723 4.74602 4.75355 4.89393 5.01113 5.03278 5.18268 5.26802 5.33055 5.38664 5.52973 5.61893 5.64681 5.71403 5.81878 5.95256 6.07282 6.23208 6.26238 6.32856 6.49076 6.74226 6.82036 6.93270 6.95015 7.19919 7.35600 7.56129 7.68731 7.84092 8.14685 8.29359 8.49867 8.70653 8.80368 9.05813 9.15090 10.36977 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.002053 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.808568 B =13635.503378 C =14825.939341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.094 3.906 13 N -0.756 5.756 14 C 0.164 3.836 15 C -0.131 4.131 16 C 0.051 3.949 17 N -0.535 5.535 18 C 0.052 3.948 19 C -0.166 4.166 20 C 0.454 3.546 21 F -0.184 7.184 22 F -0.184 7.184 23 F -0.184 7.184 24 C 0.062 3.938 25 C -0.122 4.122 26 C -0.164 4.164 27 C -0.125 4.125 28 H 0.276 0.724 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.383 0.617 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -13.898 -8.169 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.003 4.003 13 N -0.390 5.390 14 C 0.057 3.943 15 C -0.171 4.171 16 C -0.077 4.077 17 N -0.260 5.260 18 C -0.076 4.076 19 C -0.204 4.204 20 C 0.399 3.601 21 F -0.166 7.166 22 F -0.166 7.166 23 F -0.166 7.166 24 C -0.066 4.066 25 C -0.160 4.160 26 C -0.186 4.186 27 C -0.145 4.145 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.216 0.784 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.249 -13.988 -7.921 21.481 hybrid contribution 0.140 1.143 -0.471 1.244 sum -14.109 -12.844 -8.392 20.844 Atomic orbital electron populations 1.69848 1.07340 1.28673 1.37663 1.25788 0.94660 1.00852 0.92739 0.86470 0.80145 0.80877 0.79736 1.19113 1.20601 1.19267 1.19333 0.97888 0.91379 1.41244 0.91015 1.17491 0.92422 0.91976 0.91002 1.20542 1.02695 0.92635 1.04834 1.19811 0.97987 0.97029 1.03339 1.17337 0.95578 0.85707 1.01676 1.43909 1.32210 1.05806 1.57038 1.20593 0.85641 0.96490 0.91609 1.22134 0.93410 1.03149 0.98421 1.22223 0.99533 0.88747 0.97167 1.61913 1.01100 1.33084 1.29860 1.21985 0.88730 1.02672 0.94214 1.22916 0.89708 1.08321 0.99487 1.20584 0.87160 0.73499 0.78835 1.93186 1.96873 1.48137 1.78408 1.93197 1.57749 1.96221 1.69419 1.93195 1.96784 1.54788 1.71833 1.22030 0.89515 1.00947 0.94145 1.21840 0.96485 0.98460 0.99225 1.20098 1.01802 0.91938 1.04778 1.20933 0.98223 0.96426 0.98882 0.91306 0.89116 0.89640 0.78410 0.91372 0.91258 0.90544 0.94404 0.90687 0.93392 0.89483 0.86283 0.87047 0.94407 0.90477 0.90982 0.90899 0.89463 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.33 10.97 55.54 0.61 -20.72 16 2 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.47 -12.65 9.03 -37.87 -0.34 -12.99 16 8 H 0.07 1.88 7.91 -52.48 -0.41 1.46 16 9 C 0.07 1.99 5.57 -106.79 -0.60 1.39 16 10 C -0.19 -4.60 9.74 -39.27 -0.38 -4.98 16 11 C -0.16 -3.53 9.82 -39.77 -0.39 -3.92 16 12 C 0.09 1.98 6.65 -83.68 -0.56 1.42 16 13 N -0.76 -12.44 5.22 -51.91 -0.27 -12.71 16 14 C 0.16 2.26 2.20 -67.81 -0.15 2.11 16 15 C -0.13 -1.73 5.62 -26.65 -0.15 -1.88 16 16 C 0.05 0.54 5.29 -3.83 -0.02 0.52 16 17 N -0.53 -4.98 4.66 -234.68 -1.09 -6.07 16 18 C 0.05 0.40 4.72 -3.83 -0.02 0.38 16 19 C -0.17 -1.12 5.19 -26.73 -0.14 -1.26 16 20 C 0.45 3.61 3.16 37.16 0.12 3.72 16 21 F -0.18 -1.58 16.80 2.25 0.04 -1.54 16 22 F -0.18 -1.64 17.32 2.25 0.04 -1.60 16 23 F -0.18 -1.68 16.80 2.25 0.04 -1.64 16 24 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 25 C -0.12 -1.30 5.57 -26.65 -0.15 -1.45 16 26 C -0.16 -3.74 8.79 -39.77 -0.35 -4.09 16 27 C -0.12 -3.23 8.64 -39.26 -0.34 -3.56 16 28 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 29 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.38 5.68 8.60 -40.82 -0.35 5.33 16 32 H 0.07 1.06 6.44 -51.93 -0.33 0.72 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.70 6.21 -51.93 -0.32 0.38 16 37 H 0.05 0.38 7.78 -51.93 -0.40 -0.02 16 38 H 0.09 0.61 7.65 -51.93 -0.40 0.21 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.11 0.71 6.43 -51.93 -0.33 0.38 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.81 6.04 -52.49 -0.32 1.49 16 46 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -27.94 375.44 -10.12 -38.06 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.53 Total: 8.60 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.57 Total: -22.19 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.76 Total: -39.50 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.94 -10.12 -38.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097376928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.088 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds