Wall clock time and date at job start Tue Mar 31 2020 07:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50697 * 120.00217 * 2 1 4 4 C 1.50695 * 109.47194 * 294.99724 * 3 2 1 5 5 O 1.21285 * 120.00051 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00049 * 179.97438 * 4 3 2 7 7 C 1.39928 * 119.99848 * 185.51528 * 6 4 3 8 8 C 1.38612 * 119.80272 * 24.90414 * 7 6 4 9 9 C 1.38103 * 119.69261 * 180.02562 * 8 7 6 10 10 C 1.38007 * 119.85133 * 0.13582 * 9 8 7 11 11 C 1.38930 * 120.69164 * 359.97438 * 10 9 8 12 12 C 1.37575 * 119.73042 * 359.72539 * 11 10 9 13 13 C 1.50621 * 122.59228 * 180.80805 * 12 11 10 14 14 C 1.52734 * 110.59860 * 342.01767 * 13 12 11 15 15 C 1.53321 * 108.40262 * 51.06981 * 14 13 12 16 16 C 1.50650 * 117.72696 * 179.41402 * 11 10 9 17 17 N 1.28048 * 119.99507 * 179.97438 * 2 1 3 18 18 N 1.40102 * 120.00291 * 0.02562 * 17 2 1 19 19 C 1.34781 * 120.00013 * 180.02562 * 18 17 2 20 20 O 1.21790 * 119.99968 * 359.97438 * 19 18 17 21 21 C 1.41743 * 120.00016 * 179.97438 * 19 18 17 22 22 H 1.08000 * 119.99570 * 0.02562 * 21 19 18 23 23 C 1.40171 * 119.99983 * 179.97438 * 21 19 18 24 24 N 1.30616 * 120.00038 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99810 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47272 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47057 * 119.99993 * 25 23 21 28 28 H 1.48500 * 109.46991 * 239.99719 * 25 23 21 29 29 H 1.09007 * 109.46603 * 90.00102 * 1 2 3 30 30 H 1.08993 * 109.47469 * 209.99899 * 1 2 3 31 31 H 1.08997 * 109.46776 * 330.00791 * 1 2 3 32 32 H 1.09003 * 109.47092 * 174.99489 * 3 2 1 33 33 H 1.09000 * 109.47147 * 55.00070 * 3 2 1 34 34 H 0.97002 * 119.99899 * 5.51975 * 6 4 3 35 35 H 1.08001 * 120.15473 * 0.02562 * 8 7 6 36 36 H 1.08003 * 120.07185 * 179.86473 * 9 8 7 37 37 H 1.08005 * 119.65710 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.25234 * 102.30495 * 13 12 11 39 39 H 1.09000 * 109.25102 * 221.73379 * 13 12 11 40 40 H 1.09008 * 109.68194 * 291.34395 * 14 13 12 41 41 H 1.08994 * 109.67874 * 170.80272 * 14 13 12 42 42 H 1.09001 * 109.68180 * 170.48928 * 15 14 13 43 43 H 1.09010 * 109.67536 * 49.94371 * 15 14 13 44 44 H 1.08997 * 109.25315 * 282.48631 * 16 11 10 45 45 H 1.09004 * 109.25635 * 41.92162 * 16 11 10 46 46 H 0.96997 * 120.00232 * 359.97438 * 18 17 2 47 47 H 0.96998 * 119.99972 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 1.9918 2.0403 -1.2877 5 8 1.2608 1.5523 -2.1234 6 7 2.5639 3.2401 -1.5107 7 6 2.2254 3.9752 -2.6521 8 6 0.9978 3.7725 -3.2632 9 6 0.6663 4.4989 -4.3900 10 6 1.5590 5.4187 -4.9016 11 6 2.7916 5.6241 -4.2944 12 6 3.1251 4.9080 -3.1681 13 6 4.4354 5.0918 -2.4483 14 6 5.4505 5.7911 -3.3501 15 6 4.7994 7.0559 -3.9220 16 6 3.7198 6.6345 -4.9167 17 7 2.1472 -1.1090 0.0005 18 7 1.4466 -2.3223 0.0005 19 6 2.1205 -3.4895 0.0015 20 8 3.3384 -3.4896 0.0020 21 6 1.4117 -4.7170 0.0021 22 1 0.3317 -4.7169 0.0013 23 6 2.1126 -5.9310 0.0026 24 7 3.4187 -5.9310 0.0021 25 14 1.1784 -7.5486 0.0026 26 1 -0.2815 -7.2772 0.0026 27 1 1.5376 -8.3277 -1.2096 28 1 1.5368 -8.3271 1.2154 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 3.3289 1.1078 0.0897 33 1 1.9318 1.9144 0.8418 34 1 3.2103 3.5939 -0.8799 35 1 0.3038 3.0499 -2.8599 36 1 -0.2876 4.3444 -4.8722 37 1 1.2967 5.9848 -5.7832 38 1 4.2732 5.6946 -1.5548 39 1 4.8253 4.1164 -2.1571 40 1 5.7377 5.1258 -4.1645 41 1 6.3319 6.0625 -2.7692 42 1 5.5520 7.6585 -4.4305 43 1 4.3494 7.6341 -3.1148 44 1 4.1922 6.1953 -5.7953 45 1 3.1466 7.5114 -5.2180 46 1 0.4767 -2.3223 0.0005 47 1 3.9037 -6.7711 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100522885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:07 Heat of formation + Delta-G solvation = -19.582383 kcal Electronic energy + Delta-G solvation = -28724.202925 eV Core-core repulsion = 24679.129947 eV Total energy + Delta-G solvation = -4045.072979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02493 -39.42021 -37.84736 -36.38186 -35.85987 -35.08924 -32.78482 -32.15926 -31.52989 -30.42949 -29.28508 -28.22576 -27.71293 -26.14011 -24.03032 -23.28912 -22.62290 -20.86308 -20.31187 -19.55417 -18.65301 -17.95987 -17.30233 -16.87677 -16.02772 -15.83732 -15.56187 -15.48883 -15.30234 -14.92732 -14.35594 -14.19841 -14.17531 -13.86989 -13.78189 -13.32696 -13.13674 -13.10371 -12.74160 -12.66349 -12.49206 -12.33817 -12.16036 -11.92336 -11.71796 -11.58092 -11.30906 -11.25905 -11.19694 -10.85525 -10.73193 -10.60428 -10.55842 -10.37004 -10.30188 -9.70655 -9.33349 -8.95573 -8.69416 -8.09837 -7.70454 -7.45463 -6.34177 -4.87443 1.14391 1.26354 2.51056 2.57988 3.04089 3.11336 3.14613 3.19552 3.65694 3.82037 4.15877 4.33236 4.37512 4.49623 4.55758 4.62255 4.77316 4.82859 4.94101 5.04531 5.09726 5.18135 5.22404 5.29410 5.36987 5.37965 5.43618 5.50228 5.54902 5.60967 5.66324 5.70956 5.72524 5.80500 5.87065 5.95641 5.97034 6.05826 6.15823 6.32207 6.43201 6.47001 6.48042 6.86036 6.95289 7.24644 7.27200 7.88968 8.02920 8.07614 8.79643 8.83622 9.37782 10.45794 10.71238 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.001929 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.144232 B =14513.064752 C =14903.716202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 C -0.068 4.068 4 C 0.519 3.481 5 O -0.503 6.503 6 N -0.675 5.675 7 C 0.155 3.845 8 C -0.135 4.135 9 C -0.100 4.100 10 C -0.145 4.145 11 C -0.059 4.059 12 C -0.109 4.109 13 C -0.083 4.083 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.079 4.079 17 N -0.198 5.198 18 N -0.593 5.593 19 C 0.560 3.440 20 O -0.554 6.554 21 C -0.538 4.538 22 H 0.071 0.929 23 C 0.088 3.912 24 N -0.749 5.749 25 Si 0.916 3.084 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.410 0.590 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 27.344 -4.896 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.110 4.110 4 C 0.306 3.694 5 O -0.377 6.377 6 N -0.320 5.320 7 C 0.060 3.940 8 C -0.155 4.155 9 C -0.118 4.118 10 C -0.164 4.164 11 C -0.060 4.060 12 C -0.112 4.112 13 C -0.120 4.120 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.116 4.116 17 N -0.006 5.006 18 N -0.340 5.340 19 C 0.368 3.632 20 O -0.433 6.433 21 C -0.575 4.575 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.377 5.377 25 Si 0.740 3.260 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.207 0.793 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.658 26.202 -5.410 26.763 hybrid contribution -1.539 -0.428 0.239 1.615 sum -2.197 25.774 -5.171 26.380 Atomic orbital electron populations 1.21109 0.93330 1.02168 1.03143 1.23541 0.93414 0.92475 1.06799 1.20191 1.03131 0.92811 0.94847 1.20896 0.79623 0.79827 0.89063 1.90683 1.35670 1.65682 1.45619 1.43648 1.45255 1.19342 1.23711 1.17796 0.93513 0.93557 0.89086 1.21371 0.95647 1.01124 0.97385 1.20968 0.99463 0.95472 0.95945 1.21080 0.94242 1.00234 1.00821 1.19339 0.95023 0.97130 0.94461 1.19242 0.95534 0.99319 0.97101 1.20406 0.92181 1.01212 0.98157 1.21510 0.97552 0.96989 0.99472 1.21546 0.97735 0.97473 0.98938 1.20460 0.95846 0.97038 0.98250 1.73905 1.28089 0.92873 1.05764 1.47954 1.07505 1.01454 1.77097 1.17058 0.87763 0.80469 0.77916 1.90655 1.13629 1.85420 1.53598 1.19973 0.94322 0.89457 1.53770 0.91112 1.25756 0.94680 1.00617 0.92446 1.70027 1.07298 1.27780 1.32585 0.86181 0.80463 0.80948 0.78427 1.18543 1.19880 1.19894 0.90288 0.92000 0.91656 0.86944 0.87162 0.75363 0.83592 0.85881 0.86386 0.90762 0.90816 0.91476 0.91332 0.91485 0.91612 0.90630 0.90808 0.79254 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.88 36.01 0.32 -1.73 16 2 C 0.03 0.56 6.04 -78.90 -0.48 0.09 16 3 C -0.07 -0.84 6.08 -29.04 -0.18 -1.02 16 4 C 0.52 6.85 7.54 -10.99 -0.08 6.77 16 5 O -0.50 -8.52 12.17 5.55 0.07 -8.46 16 6 N -0.67 -6.97 4.95 -9.78 -0.05 -7.02 16 7 C 0.16 1.81 6.40 -83.55 -0.54 1.28 16 8 C -0.14 -1.71 8.70 -39.49 -0.34 -2.05 16 9 C -0.10 -1.08 10.04 -39.72 -0.40 -1.48 16 10 C -0.14 -1.40 9.60 -39.41 -0.38 -1.78 16 11 C -0.06 -0.56 5.74 -104.63 -0.60 -1.16 16 12 C -0.11 -1.10 5.75 -104.43 -0.60 -1.70 16 13 C -0.08 -0.62 4.75 -28.06 -0.13 -0.76 16 14 C -0.12 -0.79 5.98 -26.70 -0.16 -0.95 16 15 C -0.12 -0.72 5.98 -26.71 -0.16 -0.88 16 16 C -0.08 -0.55 5.67 -28.05 -0.16 -0.71 16 17 N -0.20 -4.55 10.93 35.61 0.39 -4.16 16 18 N -0.59 -14.80 6.08 29.13 0.18 -14.62 16 19 C 0.56 16.83 7.69 -14.92 -0.11 16.72 16 20 O -0.55 -18.93 15.22 5.11 0.08 -18.86 16 21 C -0.54 -15.36 9.31 -37.52 -0.35 -15.71 16 22 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 23 C 0.09 2.44 5.50 -17.34 -0.10 2.35 16 24 N -0.75 -22.42 11.73 55.56 0.65 -21.77 16 25 Si 0.92 19.87 29.56 -169.99 -5.02 14.85 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 28 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 29 H 0.08 1.24 7.55 -51.93 -0.39 0.85 16 30 H 0.06 0.93 6.31 -51.93 -0.33 0.60 16 31 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.41 2.86 7.44 -40.82 -0.30 2.56 16 35 H 0.15 2.04 5.77 -52.49 -0.30 1.74 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 0.89 8.05 -52.48 -0.42 0.47 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.57 7.41 -51.93 -0.38 0.18 16 40 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.39 8.10 -51.92 -0.42 -0.03 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.37 8.00 6.34 -182.60 -1.16 6.85 16 47 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -38.88 385.96 -9.82 -48.69 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.48 Total: 8.26 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.44 Total: -2.73 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 1.17 Total: -47.57 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: 0.15 Total: -27.31 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.88 -9.82 -48.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100522885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.112 kcal (2) G-P(sol) polarization free energy of solvation -38.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds