Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47414 * 2 1 4 4 N 1.46503 * 109.46878 * 239.99643 * 2 1 3 5 5 C 1.30662 * 120.00228 * 237.80271 * 4 2 1 6 6 C 1.47107 * 119.99825 * 138.14911 * 5 4 2 7 7 C 1.36311 * 125.44915 * 41.10467 * 6 5 4 8 8 C 1.37743 * 113.31145 * 179.80336 * 7 6 5 9 9 C 1.33628 * 115.06411 * 0.49100 * 8 7 6 10 10 S 1.70613 * 110.94489 * 359.72822 * 9 8 7 11 11 N 1.38016 * 119.99708 * 318.14658 * 5 4 2 12 12 C 1.46496 * 120.00291 * 23.45540 * 11 5 4 13 13 C 1.50703 * 109.47604 * 87.89993 * 12 11 5 14 14 H 1.08002 * 119.99442 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00371 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99699 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00164 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47141 * 90.00094 * 17 15 13 19 19 H 1.48502 * 109.47080 * 209.99839 * 17 15 13 20 20 H 1.48497 * 109.46973 * 330.00172 * 17 15 13 21 21 C 1.46494 * 119.99822 * 203.44754 * 11 5 4 22 22 C 1.50698 * 109.46944 * 97.62559 * 21 11 5 23 23 C 1.38678 * 120.41658 * 270.82312 * 22 21 11 24 24 C 1.38632 * 118.41669 * 179.78226 * 23 22 21 25 25 C 1.38220 * 119.16228 * 0.51812 * 24 23 22 26 26 N 1.31857 * 120.76511 * 359.72667 * 25 24 23 27 27 C 1.31886 * 121.72495 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46949 * 300.00202 * 1 2 3 29 29 H 1.08999 * 109.46765 * 60.00258 * 1 2 3 30 30 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47070 * 120.00395 * 2 1 3 32 32 H 1.09000 * 109.47228 * 59.99968 * 3 2 1 33 33 H 1.09000 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46944 * 299.99632 * 3 2 1 35 35 H 1.08001 * 123.35019 * 359.95763 * 7 6 5 36 36 H 1.08004 * 122.47025 * 180.22527 * 8 7 6 37 37 H 1.08003 * 124.52196 * 179.76683 * 9 8 7 38 38 H 1.09002 * 109.47116 * 207.90500 * 12 11 5 39 39 H 1.09004 * 109.46993 * 327.90308 * 12 11 5 40 40 H 0.96998 * 119.99755 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.47730 * 217.62374 * 21 11 5 42 42 H 1.09005 * 109.47582 * 337.62387 * 21 11 5 43 43 H 1.08001 * 120.79002 * 0.02699 * 23 22 21 44 44 H 1.08003 * 120.41348 * 180.22326 * 24 23 22 45 45 H 1.08002 * 119.61886 * 179.75111 * 25 24 23 46 46 H 1.07999 * 119.61723 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.8045 -1.7275 -1.0768 6 6 2.6044 -2.9050 -1.9355 7 6 2.3019 -2.8723 -3.2642 8 6 2.1738 -4.1239 -3.8251 9 6 2.3551 -5.1437 -2.9809 10 16 2.7098 -4.5797 -1.4102 11 7 3.8227 -1.7177 -0.1451 12 6 3.7374 -0.8390 1.0240 13 6 3.0074 -1.5497 2.1346 14 1 2.6438 -2.5555 1.9846 15 6 2.8048 -0.9162 3.3423 16 7 3.2481 0.3084 3.5250 17 14 1.9006 -1.7974 4.7190 18 1 2.8765 -2.5412 5.5554 19 1 1.1864 -0.8022 5.5585 20 1 0.9203 -2.7492 4.1375 21 6 4.9886 -2.5862 -0.3251 22 6 6.1117 -1.7968 -0.9468 23 6 6.2331 -1.7153 -2.3259 24 6 7.2792 -0.9742 -2.8534 25 6 8.1664 -0.3546 -1.9935 26 7 8.0230 -0.4579 -0.6868 27 6 7.0366 -1.1495 -0.1500 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 2.1776 -1.9562 -3.8225 36 1 1.9397 -4.2702 -4.8692 37 1 2.2867 -6.1858 -3.2563 38 1 4.7422 -0.5794 1.3575 39 1 3.1971 0.0693 0.7572 40 1 3.1052 0.7542 4.3745 41 1 5.3079 -2.9713 0.6433 42 1 4.7246 -3.4183 -0.9778 43 1 5.5271 -2.2140 -2.9734 44 1 7.4021 -0.8861 -3.9228 45 1 8.9864 0.2213 -2.3965 46 1 6.9517 -1.2120 0.9248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104136228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = 138.183786 kcal Electronic energy + Delta-G solvation = -28521.534513 eV Core-core repulsion = 24926.055660 eV Total energy + Delta-G solvation = -3595.478853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.01667 -38.61571 -37.28243 -34.76173 -33.14662 -32.42830 -31.70006 -30.59400 -28.64627 -27.72899 -26.32114 -25.37133 -24.56180 -23.38111 -22.67051 -21.82930 -20.32532 -19.72982 -18.26070 -17.23383 -16.87518 -16.52470 -16.07593 -15.58491 -15.07745 -14.99627 -14.91342 -14.22406 -13.96499 -13.56814 -13.38521 -13.31334 -12.89088 -12.75097 -12.74061 -12.50585 -12.31455 -12.11908 -11.80950 -11.52693 -11.37687 -11.21151 -11.11606 -10.99774 -10.84809 -10.63607 -10.44094 -10.32752 -10.16199 -9.85150 -9.61067 -9.25178 -9.22864 -8.83344 -8.57315 -8.37620 -8.14590 -7.85035 -6.81597 -6.17857 -4.28713 0.94301 1.28907 1.48276 1.57160 2.15589 2.71169 3.19691 3.23885 3.28143 3.31097 3.85887 4.20039 4.32224 4.66157 4.96149 5.05726 5.07956 5.10865 5.15715 5.19810 5.26066 5.51800 5.52977 5.70598 5.80308 5.90473 5.99140 6.03486 6.06046 6.15899 6.21870 6.28177 6.41395 6.46220 6.50048 6.54071 6.59210 6.64128 6.76630 6.89893 6.94086 7.10764 7.21423 7.34858 7.46806 7.65585 7.90407 8.03915 8.18831 8.30791 8.76003 9.12494 9.37554 10.83169 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007792 B = 0.005660 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.462144 B = 4945.995529 C = 6522.268302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.045 3.955 3 C -0.135 4.135 4 N -0.627 5.627 5 C 0.479 3.521 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.136 4.136 9 C -0.269 4.269 10 S 0.204 5.796 11 N -0.609 5.609 12 C 0.198 3.802 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.152 3.848 22 C -0.138 4.138 23 C -0.061 4.061 24 C -0.178 4.178 25 C 0.089 3.911 26 N -0.487 5.487 27 C 0.117 3.883 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.144 0.856 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.161 0.839 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.150 0.850 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -7.712 -12.161 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.193 4.193 4 N -0.362 5.362 5 C 0.205 3.795 6 C -0.271 4.271 7 C -0.137 4.137 8 C -0.168 4.168 9 C -0.406 4.406 10 S 0.471 5.529 11 N -0.327 5.327 12 C 0.080 3.920 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.517 5.517 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.025 3.975 22 C -0.142 4.142 23 C -0.088 4.088 24 C -0.198 4.198 25 C -0.068 4.068 26 N -0.195 5.195 27 C -0.040 4.040 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.178 0.822 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.275 -7.297 -10.555 13.243 hybrid contribution -1.017 -0.235 -0.622 1.215 sum 2.257 -7.532 -11.178 13.666 Atomic orbital electron populations 1.21728 0.96389 1.00439 0.99850 1.22559 0.93648 0.95030 0.95017 1.21896 1.00499 0.96921 0.99995 1.71536 1.31641 1.07403 1.25595 1.19680 0.90246 0.87297 0.82244 1.23266 1.11156 0.95536 0.97140 1.20633 1.01497 0.98656 0.92955 1.19950 1.04376 0.91489 1.01017 1.25133 1.12378 1.03937 0.99198 1.83358 1.65409 0.95995 1.08187 1.48336 1.14883 1.43608 1.25834 1.20582 0.98570 0.91870 0.80995 1.21451 1.37327 1.01448 0.97643 0.92216 1.24932 0.95386 0.94829 0.98269 1.69929 1.44821 1.11740 1.25210 0.86591 0.80016 0.79616 0.81945 1.20462 1.20957 1.19642 1.20364 0.84601 0.91596 1.00893 1.21414 0.97920 1.00475 0.94403 1.21460 0.96374 0.96212 0.94760 1.22054 0.96792 0.99899 1.01042 1.22688 0.98087 0.96911 0.89129 1.67706 1.21815 1.16222 1.13785 1.22795 0.89228 0.91305 1.00668 0.93179 0.93970 0.93808 0.83993 0.92798 0.92934 0.94346 0.83596 0.84687 0.82179 0.95526 0.89341 0.92389 0.89729 0.90416 0.85375 0.85278 0.83305 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.52 37.16 0.35 -2.13 16 2 C 0.05 0.99 2.55 -67.93 -0.17 0.81 16 3 C -0.14 -2.88 8.67 37.16 0.32 -2.56 16 4 N -0.63 -13.27 10.06 -52.17 -0.52 -13.79 16 5 C 0.48 9.35 7.00 -154.17 -1.08 8.27 16 6 C -0.15 -2.45 5.31 -36.68 -0.19 -2.64 16 7 C -0.10 -1.49 10.20 -40.46 -0.41 -1.90 16 8 C -0.14 -1.60 10.15 -41.38 -0.42 -2.02 16 9 C -0.27 -3.04 10.92 29.12 0.32 -2.72 16 10 S 0.20 2.77 20.90 -107.50 -2.25 0.52 16 11 N -0.61 -12.04 2.54 -174.57 -0.44 -12.48 16 12 C 0.20 4.64 4.71 -5.19 -0.02 4.62 16 13 C -0.54 -13.52 7.38 -34.44 -0.25 -13.77 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.88 -23.56 13.29 55.43 0.74 -22.82 16 17 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 21 C 0.15 2.52 5.53 -5.20 -0.03 2.49 16 22 C -0.14 -2.21 5.45 -104.48 -0.57 -2.78 16 23 C -0.06 -0.87 9.86 -39.27 -0.39 -1.26 16 24 C -0.18 -2.27 10.11 -39.44 -0.40 -2.66 16 25 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 26 N -0.49 -8.07 10.36 -13.25 -0.14 -8.21 16 27 C 0.12 1.98 10.46 -17.55 -0.18 1.79 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.14 3.47 2.85 -51.93 -0.15 3.33 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.19 6.73 -51.93 -0.35 0.84 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.03 0.67 7.45 -51.93 -0.39 0.28 16 39 H 0.09 2.17 1.83 -51.93 -0.09 2.08 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.08 1.14 4.82 -50.96 -0.25 0.90 16 43 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.16 2.65 7.86 -52.49 -0.41 2.23 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -28.42 387.27 -11.48 -39.90 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.25 Total: 9.66 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.43 Total: -13.72 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.37 Total: -57.31 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.25 Total: 0.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.42 -11.48 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104136228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.083 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds