Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38280 * 119.97299 * 2 1 4 4 C 1.38239 * 120.11297 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05654 * 359.76427 * 4 3 2 6 6 C 1.50693 * 120.03009 * 180.25341 * 5 4 3 7 7 C 1.38715 * 119.93947 * 0.48902 * 5 4 3 8 8 O 1.35901 * 120.05457 * 179.76595 * 7 5 4 9 9 C 1.42899 * 116.99657 * 174.32402 * 8 7 5 10 10 C 1.53121 * 109.57344 * 85.81476 * 9 8 7 11 11 C 1.53035 * 109.27881 * 177.58809 * 10 9 8 12 12 N 1.46845 * 109.52193 * 300.81721 * 11 10 9 13 13 C 1.46900 * 111.00171 * 185.84007 * 12 11 10 14 14 C 1.52999 * 109.47370 * 169.92470 * 13 12 11 15 15 H 1.09003 * 109.47280 * 54.80395 * 14 13 12 16 16 C 1.47203 * 109.47107 * 294.80633 * 14 13 12 17 17 N 9.88992 * 112.39436 * 192.78134 * 2 1 3 18 18 C 1.52998 * 109.47242 * 174.80834 * 14 13 12 19 19 C 1.50699 * 109.47241 * 184.99768 * 18 14 13 20 20 H 1.08006 * 119.99892 * 0.02562 * 19 18 14 21 21 C 1.37881 * 119.99991 * 179.97438 * 19 18 14 22 22 N 1.31514 * 119.99965 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99683 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46959 * 60.00502 * 23 21 19 25 25 H 1.48497 * 109.46709 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47271 * 299.99974 * 23 21 19 27 27 C 1.46854 * 111.20124 * 61.74119 * 12 11 10 28 28 C 1.53038 * 109.52128 * 298.26199 * 27 12 11 29 29 C 1.38127 * 119.96741 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47265 * 270.02196 * 1 2 3 31 31 H 1.08999 * 109.46758 * 30.02502 * 1 2 3 32 32 H 1.09001 * 109.46943 * 150.02060 * 1 2 3 33 33 H 1.08006 * 119.94248 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.97578 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47633 * 270.23328 * 6 5 4 36 36 H 1.09008 * 109.47288 * 30.23928 * 6 5 4 37 37 H 1.09008 * 109.47001 * 150.22937 * 6 5 4 38 38 H 1.08992 * 109.52699 * 325.64889 * 9 8 7 39 39 H 1.09001 * 109.49906 * 297.52367 * 10 9 8 40 40 H 1.09003 * 109.50311 * 57.64361 * 10 9 8 41 41 H 1.08997 * 109.45891 * 180.80319 * 11 10 9 42 42 H 1.08998 * 109.45344 * 60.82428 * 11 10 9 43 43 H 1.09002 * 109.47016 * 289.92469 * 13 12 11 44 44 H 1.08999 * 109.46739 * 49.92284 * 13 12 11 45 45 H 1.08998 * 109.46982 * 304.99748 * 18 14 13 46 46 H 1.08996 * 109.47385 * 64.99757 * 18 14 13 47 47 H 0.96995 * 119.99478 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.46444 * 178.23981 * 27 12 11 49 49 H 1.09001 * 109.44771 * 58.26828 * 27 12 11 50 50 H 1.08997 * 109.50191 * 299.23297 * 28 27 12 51 51 H 1.09005 * 109.50090 * 179.11862 * 28 27 12 52 52 H 1.07999 * 120.03352 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0070 0.0060 6 6 5.7821 0.0114 0.0123 7 6 3.5846 -1.1959 0.0007 8 8 4.2658 -2.3719 0.0012 9 6 3.4940 -3.5685 0.1215 10 6 3.0117 -4.0092 -1.2633 11 6 2.2374 -5.3229 -1.1342 12 7 3.1084 -6.3505 -0.5497 13 6 2.4432 -7.6602 -0.5383 14 6 3.4559 -8.7434 -0.1616 15 1 3.9289 -8.4850 0.7858 16 6 4.4827 -8.8418 -1.2118 17 7 5.2749 -8.9175 -2.0229 18 6 2.7377 -10.0872 -0.0233 19 6 3.7105 -11.1287 0.4665 20 1 4.7382 -10.8590 0.6602 21 6 3.2883 -12.4257 0.6684 22 7 2.0367 -12.7540 0.4330 23 14 4.4944 -13.7168 1.2748 24 1 5.0365 -13.3065 2.5950 25 1 3.7972 -15.0211 1.4092 26 1 5.6083 -13.8495 0.3018 27 6 3.5460 -5.9709 0.7998 28 6 4.3593 -4.6765 0.7284 29 6 2.1970 -1.1966 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6565 2.1324 -0.0004 34 1 4.1176 2.1381 0.0010 35 1 6.1499 0.0145 -1.0137 36 1 6.1408 0.9015 0.5296 37 1 6.1459 -0.8785 0.5261 38 1 2.6340 -3.3842 0.7652 39 1 2.3602 -3.2426 -1.6827 40 1 3.8706 -4.1559 -1.9182 41 1 1.9048 -5.6468 -2.1204 42 1 1.3711 -5.1719 -0.4902 43 1 1.6335 -7.6502 0.1914 44 1 2.0377 -7.8703 -1.5281 45 1 1.9195 -9.9901 0.6904 46 1 2.3404 -10.3884 -0.9926 47 1 1.7399 -13.6664 0.5747 48 1 4.1637 -6.7655 1.2182 49 1 2.6733 -5.8169 1.4344 50 1 5.2394 -4.8337 0.1048 51 1 4.6707 -4.3866 1.7320 52 1 1.6570 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559901.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -7.475879 kcal Electronic energy + Delta-G solvation = -29344.163786 eV Core-core repulsion = 25500.874790 eV Total energy + Delta-G solvation = -3843.288996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81927 -39.19809 -37.73682 -36.12751 -34.24319 -33.77487 -32.74758 -31.32173 -30.77401 -30.12019 -29.47392 -26.92235 -25.21869 -24.59498 -23.47201 -22.85289 -21.84719 -21.58923 -21.23783 -19.90026 -17.87187 -16.83790 -16.56602 -16.41828 -15.99461 -15.68503 -15.25857 -14.91482 -14.68628 -14.60255 -14.46895 -14.13255 -13.84943 -13.58987 -13.47301 -13.20876 -13.03308 -12.92803 -12.83766 -12.63581 -12.43105 -12.26851 -12.13804 -11.93433 -11.74084 -11.63812 -11.52375 -11.37950 -11.32107 -11.21793 -11.05642 -11.01000 -10.72867 -10.66246 -10.54800 -10.45048 -10.10090 -9.55362 -9.25497 -8.94760 -8.47184 -8.28472 -8.25090 -6.11263 -4.14491 1.03735 1.20550 2.96425 3.30066 3.34468 3.38208 3.45456 3.71117 3.81275 3.90205 4.39728 4.40808 4.50843 4.53128 4.56869 4.71108 4.82296 4.85610 4.88162 4.95443 5.02637 5.17284 5.19452 5.26596 5.26866 5.27924 5.35078 5.40024 5.42605 5.44741 5.48173 5.49313 5.56148 5.66091 5.67715 5.70862 5.82593 5.85827 5.98100 5.99387 6.01002 6.07115 6.14460 6.25269 6.33100 6.33793 6.47191 6.59108 7.08770 7.10829 7.26333 7.39746 7.50377 7.83707 8.21179 8.58429 8.89953 9.51025 10.99548 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.001986 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.409437 B =14095.208527 C =14668.125537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.104 4.104 7 C 0.139 3.861 8 O -0.304 6.304 9 C 0.086 3.914 10 C -0.140 4.140 11 C 0.061 3.939 12 N -0.542 5.542 13 C 0.063 3.937 14 C 0.010 3.990 15 H 0.100 0.900 16 C 0.255 3.745 17 N -0.478 5.478 18 C 0.032 3.968 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.054 3.946 28 C -0.110 4.110 29 C -0.208 4.208 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.037 0.963 46 H 0.026 0.974 47 H 0.263 0.737 48 H 0.093 0.907 49 H 0.038 0.962 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 28.654 1.797 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.161 4.161 7 C 0.093 3.907 8 O -0.218 6.218 9 C 0.030 3.970 10 C -0.178 4.178 11 C -0.067 4.067 12 N -0.267 5.267 13 C -0.065 4.065 14 C -0.012 4.012 15 H 0.118 0.882 16 C -0.062 4.062 17 N -0.155 5.155 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.074 4.074 28 C -0.148 4.148 29 C -0.226 4.226 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.057 0.943 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.597 28.300 0.266 28.346 hybrid contribution -0.693 -0.802 1.117 1.540 sum -2.290 27.497 1.384 27.627 Atomic orbital electron populations 1.20818 0.91103 1.02886 1.02456 1.19696 0.95955 0.92533 0.97177 1.20887 0.94088 0.97418 1.05387 1.20844 0.93980 0.96759 0.98326 1.19281 0.96562 0.90400 1.06511 1.20592 0.90568 1.02674 1.02243 1.18829 0.90263 0.85912 0.95663 1.86131 1.36121 1.12157 1.87348 1.22576 0.94408 0.82833 0.97145 1.22152 1.01594 0.96854 0.97172 1.21987 0.93508 0.90972 1.00269 1.61968 1.40992 1.02445 1.21297 1.22230 0.95199 0.86701 1.02401 1.19257 0.90723 0.98709 0.92495 0.88222 1.28844 0.93292 0.90505 0.93534 1.81002 1.11489 1.11311 1.11708 1.19167 0.95685 0.87346 0.98492 1.21094 0.96109 0.94015 1.45252 0.92553 1.24954 0.95173 0.98546 0.95295 1.69925 1.15285 1.19314 1.48494 0.86650 0.81246 0.80707 0.79463 1.20048 1.21202 1.20210 1.22142 0.98820 0.96793 0.89643 1.21646 0.99378 0.92311 1.01500 1.21179 0.93019 0.98929 1.09503 0.91004 0.91398 0.91466 0.86139 0.85599 0.91514 0.91913 0.91077 0.91207 0.91152 0.89815 0.90058 0.94706 0.92712 0.90068 0.94487 0.95561 0.92736 0.88899 0.94339 0.89799 0.90625 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.05 -0.47 5.88 -104.64 -0.62 -1.08 16 3 C -0.16 -1.33 9.70 -39.57 -0.38 -1.71 16 4 C -0.08 -0.69 9.70 -39.61 -0.38 -1.08 16 5 C -0.13 -1.27 5.89 -104.47 -0.62 -1.89 16 6 C -0.10 -0.89 9.79 36.00 0.35 -0.54 16 7 C 0.14 1.52 6.58 -39.21 -0.26 1.26 16 8 O -0.30 -3.49 8.85 -19.43 -0.17 -3.66 16 9 C 0.09 0.89 2.17 -26.61 -0.06 0.83 16 10 C -0.14 -1.44 5.40 -26.65 -0.14 -1.58 16 11 C 0.06 0.65 5.46 -3.84 -0.02 0.62 16 12 N -0.54 -6.90 4.36 -234.67 -1.02 -7.92 16 13 C 0.06 0.90 4.32 -3.82 -0.02 0.88 16 14 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 15 H 0.10 1.67 6.21 -51.93 -0.32 1.34 16 16 C 0.26 5.28 13.67 -20.75 -0.28 4.99 16 17 N -0.48 -10.83 18.54 42.17 0.78 -10.05 16 18 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -13.84 8.60 -34.44 -0.30 -14.14 16 20 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 23 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.05 0.61 5.30 -3.83 -0.02 0.59 16 28 C -0.11 -1.17 5.75 -26.65 -0.15 -1.32 16 29 C -0.21 -2.04 7.97 -39.43 -0.31 -2.35 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.43 8.09 -51.92 -0.42 0.01 16 37 H 0.07 0.66 7.53 -51.92 -0.39 0.27 16 38 H 0.07 0.67 6.27 -51.93 -0.33 0.34 16 39 H 0.07 0.66 6.99 -51.93 -0.36 0.30 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.08 1.17 7.98 -51.93 -0.41 0.75 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.09 1.10 6.12 -51.93 -0.32 0.78 16 49 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.13 1.15 5.44 -52.49 -0.29 0.87 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -30.64 416.34 -10.40 -41.03 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.70 Total: -2.56 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.27 Total: -14.72 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.49 Total: -42.52 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.17 Total: -3.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.64 -10.40 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559901.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.557 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds