Wall clock time and date at job start Tue Mar 31 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00281 * 2 1 4 4 H 1.48502 * 109.47473 * 270.00248 * 3 2 1 5 5 H 1.48507 * 109.47165 * 30.00085 * 3 2 1 6 6 H 1.48505 * 109.47434 * 150.00109 * 3 2 1 7 7 C 1.37874 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47486 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47372 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54236 * 68.37687 * 11 10 9 13 13 O 1.42101 * 110.54458 * 291.62715 * 11 10 9 14 14 N 1.65596 * 104.44847 * 180.02562 * 11 10 9 15 15 C 1.34776 * 120.00569 * 64.99991 * 14 11 10 16 16 O 1.21495 * 119.99465 * 0.02562 * 15 14 11 17 17 C 1.48326 * 120.00481 * 179.97438 * 15 14 11 18 18 N 1.31346 * 127.13005 * 359.96295 * 17 15 14 19 19 O 1.21242 * 111.48339 * 179.97438 * 18 17 15 20 20 C 1.33638 * 111.64423 * 359.62223 * 19 18 17 21 21 C 1.34985 * 106.59827 * 0.67760 * 20 19 18 22 22 C 1.50083 * 126.60301 * 179.22838 * 21 20 19 23 23 C 1.53336 * 109.02954 * 27.93270 * 22 21 20 24 24 C 1.52545 * 109.60095 * 271.60618 * 23 22 21 25 25 C 1.52623 * 110.98589 * 61.28735 * 24 23 22 26 26 C 1.50609 * 127.99898 * 181.60897 * 20 19 18 27 27 H 0.96996 * 119.99354 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47390 * 59.99619 * 9 7 2 29 29 H 1.08998 * 109.47312 * 299.99611 * 9 7 2 30 30 H 1.09004 * 109.46751 * 59.99676 * 10 9 7 31 31 H 1.08998 * 109.46894 * 300.00316 * 10 9 7 32 32 H 0.97002 * 119.99756 * 245.00148 * 14 11 10 33 33 H 1.09002 * 109.56062 * 147.82676 * 22 21 20 34 34 H 1.08997 * 109.56053 * 268.04050 * 22 21 20 35 35 H 1.08992 * 109.46126 * 31.54489 * 23 22 21 36 36 H 1.09007 * 109.45601 * 151.50330 * 23 22 21 37 37 H 1.08994 * 109.11016 * 300.92622 * 24 23 22 38 38 H 1.08998 * 109.19958 * 181.70186 * 24 23 22 39 39 H 1.09002 * 109.40624 * 273.57954 * 25 24 23 40 40 H 1.09003 * 109.34035 * 153.78721 * 25 24 23 41 41 H 1.08997 * 109.53217 * 345.80267 * 26 20 19 42 42 H 1.08994 * 109.53287 * 105.96011 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6622 -0.0027 11 16 1.3380 -5.2331 -0.0034 12 8 0.6636 -5.4190 -1.2403 13 8 0.6644 -5.4205 1.2337 14 7 2.5201 -6.3928 -0.0038 15 6 3.3466 -6.5130 1.0540 16 8 3.2241 -5.7709 2.0081 17 6 4.4051 -7.5522 1.0539 18 7 4.6604 -8.4237 0.1050 19 8 5.5908 -9.1426 0.4010 20 6 6.0899 -8.8336 1.6015 21 6 5.3480 -7.8105 2.0759 22 6 5.5130 -7.1244 3.4005 23 6 6.9791 -7.2271 3.8376 24 6 7.1891 -8.5165 4.6253 25 6 6.8769 -9.7388 3.7663 26 6 7.2610 -9.4634 2.3089 27 1 -0.4849 0.8401 0.0004 28 1 0.6245 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8718 -3.6052 0.8873 31 1 2.8718 -3.6036 -0.8926 32 1 2.6178 -6.9855 -0.7654 33 1 5.2332 -6.0752 3.3053 34 1 4.8763 -7.6059 4.1427 35 1 7.6211 -7.2331 2.9569 36 1 7.2316 -6.3722 4.4651 37 1 6.5334 -8.5136 5.4960 38 1 8.2256 -8.5682 4.9585 39 1 5.8110 -9.9595 3.8243 40 1 7.4442 -10.5935 4.1349 41 1 7.5224 -10.4005 1.8175 42 1 8.1135 -8.7850 2.2773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159638439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:58 Heat of formation + Delta-G solvation = -64.601285 kcal Electronic energy + Delta-G solvation = -27870.213439 eV Core-core repulsion = 23752.391967 eV Total energy + Delta-G solvation = -4117.821472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.113 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.48804 -40.11794 -38.57780 -36.76781 -35.68700 -34.79066 -34.28040 -33.92481 -32.34836 -31.57515 -31.21116 -26.80350 -25.71439 -25.34155 -25.24111 -21.89546 -21.70062 -20.91979 -20.17249 -19.45728 -18.36982 -18.16120 -17.55749 -17.13024 -16.55705 -15.95755 -15.85175 -15.28612 -15.21258 -14.95631 -14.91359 -14.55737 -14.13019 -13.82109 -13.78345 -13.48322 -12.87773 -12.60116 -12.49548 -12.42064 -12.24026 -11.84244 -11.77946 -11.68233 -11.65832 -11.35636 -11.11567 -11.07483 -11.05039 -10.97916 -10.90283 -10.66300 -10.61462 -10.42003 -10.36884 -9.74228 -9.46074 -9.21193 -8.50989 -6.13303 -4.18914 0.39685 0.66100 1.25155 2.44065 2.54500 2.65885 3.26438 3.32516 3.35692 3.39553 3.88673 4.03699 4.24464 4.34429 4.36492 4.42549 4.44365 4.56465 4.60469 4.76308 4.83860 4.91003 4.96635 5.19465 5.22066 5.28053 5.34187 5.41511 5.50516 5.55190 5.62745 5.67247 5.74860 5.78957 5.88347 6.04145 6.39931 6.48201 7.14939 7.26449 7.32684 7.64458 7.79694 8.14935 8.83965 9.45701 10.97858 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002880 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.200917 B = 9718.517285 C =10876.931520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.564 3.436 12 O -0.948 6.948 13 O -0.934 6.934 14 N -1.049 6.049 15 C 0.626 3.374 16 O -0.466 6.466 17 C -0.027 4.027 18 N -0.327 5.327 19 O 0.133 5.867 20 C -0.034 4.034 21 C -0.140 4.140 22 C -0.054 4.054 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.038 4.038 27 H 0.266 0.734 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.433 0.567 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.029 -21.568 6.034 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.664 3.336 12 O -0.938 6.938 13 O -0.924 6.924 14 N -0.809 5.809 15 C 0.409 3.591 16 O -0.335 6.335 17 C -0.187 4.187 18 N -0.027 5.027 19 O 0.056 5.944 20 C -0.098 4.098 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.269 0.731 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.216 -21.331 5.573 27.369 hybrid contribution 1.089 1.079 0.020 1.533 sum 17.305 -20.252 5.593 27.220 Atomic orbital electron populations 1.69957 1.06118 1.27267 1.49470 1.25064 0.95001 0.99563 0.94833 0.86436 0.79730 0.82705 0.78223 1.20456 1.20958 1.19701 1.20968 0.93114 0.89523 1.52306 0.91932 1.19007 0.92594 0.90212 0.99132 1.30349 1.13765 1.15827 1.10928 1.06884 0.74877 0.77194 0.74648 1.93603 1.70088 1.85202 1.44939 1.93604 1.70054 1.84307 1.44449 1.55399 1.48536 1.50543 1.26418 1.16680 0.79023 0.81711 0.81638 1.90991 1.68621 1.41587 1.32265 1.22968 1.01478 1.00328 0.93879 1.74410 1.02824 1.03782 1.21647 1.84761 1.33959 1.44781 1.30936 1.24151 1.00513 0.98345 0.86758 1.20724 0.95923 0.98607 0.99249 1.20111 0.97248 1.01621 0.90149 1.21729 0.95771 0.98142 1.00630 1.21549 1.02075 0.93929 0.98599 1.21602 1.02657 0.98757 0.92531 1.20302 0.91673 1.01328 0.94283 0.92476 0.94678 0.94455 0.84972 0.85861 0.73107 0.88567 0.89511 0.91205 0.90664 0.91299 0.91548 0.91175 0.90309 0.89122 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.57 -11.57 5.82 37.16 0.22 -11.35 16 11 S 2.56 48.55 5.11 -107.50 -0.55 48.00 16 12 O -0.95 -19.49 18.08 -57.54 -1.04 -20.53 16 13 O -0.93 -20.74 17.03 -64.80 -1.10 -21.84 16 14 N -1.05 -15.57 5.60 30.64 0.17 -15.40 16 15 C 0.63 9.60 7.59 -12.11 -0.09 9.51 16 16 O -0.47 -8.22 13.59 -11.78 -0.16 -8.38 16 17 C -0.03 -0.35 7.19 -82.71 -0.60 -0.95 16 18 N -0.33 -3.93 11.88 33.31 0.40 -3.54 16 19 O 0.13 1.32 11.18 18.13 0.20 1.52 16 20 C -0.03 -0.28 6.64 -35.51 -0.24 -0.52 16 21 C -0.14 -1.48 5.73 -104.86 -0.60 -2.08 16 22 C -0.05 -0.50 5.37 -28.01 -0.15 -0.65 16 23 C -0.13 -0.79 5.55 -26.79 -0.15 -0.94 16 24 C -0.12 -0.57 5.63 -27.16 -0.15 -0.72 16 25 C -0.12 -0.50 5.63 -26.81 -0.15 -0.65 16 26 C -0.04 -0.17 5.55 -27.81 -0.15 -0.32 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.13 2.57 7.19 -51.92 -0.37 2.20 16 31 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 32 H 0.43 5.20 8.56 -34.47 -0.30 4.91 16 33 H 0.10 1.07 7.07 -51.93 -0.37 0.71 16 34 H 0.09 0.78 7.83 -51.93 -0.41 0.37 16 35 H 0.07 0.42 5.69 -51.93 -0.30 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.38 7.79 -51.93 -0.40 -0.02 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 0.35 6.38 -51.93 -0.33 0.02 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -36.01 358.52 -8.97 -44.98 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.39 Total: 0.65 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.61 Total: -21.33 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 1.30 Total: -44.82 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -2.10 Total: -49.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -0.55 Total: 48.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.01 -8.97 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159638439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.622 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds