Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46939 * 120.00419 * 3 2 1 7 7 C 1.40055 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99346 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99987 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99794 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99771 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99881 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 59.99929 * 13 12 11 15 15 O 1.42903 * 109.46726 * 299.99685 * 13 12 11 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 11 17 17 O 1.42894 * 109.47240 * 184.99627 * 16 13 12 18 18 C 1.35917 * 116.99996 * 179.97438 * 17 16 13 19 19 C 1.38720 * 120.05801 * 0.02562 * 18 17 16 20 20 C 1.38148 * 119.95232 * 179.97438 * 19 18 17 21 21 C 1.38274 * 120.07181 * 0.02562 * 20 19 18 22 22 C 1.38241 * 120.12094 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.04551 * 359.70066 * 22 21 20 24 24 Br 1.89101 * 120.03928 * 180.27541 * 23 22 21 25 25 H 0.96997 * 119.99669 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00087 * 0.02562 * 11 9 7 27 27 H 1.08992 * 109.47085 * 59.99983 * 12 11 9 28 28 H 1.09004 * 109.46923 * 299.99567 * 12 11 9 29 29 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 30 30 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 31 31 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 32 32 H 1.07999 * 120.02528 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.96133 * 179.97438 * 20 19 18 34 34 H 1.08009 * 119.94026 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.97853 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6963 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9164 0.0011 13 6 2.2106 -6.0794 0.0016 14 1 2.8373 -6.0213 0.8916 15 8 3.0321 -6.0041 -1.1653 16 6 1.4457 -7.4044 0.0016 17 8 2.3697 -8.4879 0.1194 18 6 1.8496 -9.7436 0.1355 19 6 0.4782 -9.9288 0.0393 20 6 -0.0481 -11.2060 0.0553 21 6 0.7906 -12.2996 0.1676 22 6 2.1577 -12.1185 0.2637 23 6 2.6901 -10.8430 0.2414 24 35 4.5608 -10.5958 0.3649 25 1 -0.4849 0.8400 0.0004 26 1 2.9190 -3.6477 0.0009 27 1 0.5895 -4.9744 -0.8885 28 1 0.5901 -4.9740 0.8914 29 1 2.5400 -6.0499 -1.9964 30 1 0.7532 -7.4242 0.8433 31 1 0.8881 -7.5020 -0.9299 32 1 -0.1776 -9.0752 -0.0481 33 1 -1.1158 -11.3504 -0.0192 34 1 0.3768 -13.2972 0.1803 35 1 2.8106 -12.9743 0.3517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184836573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = -100.677027 kcal Electronic energy + Delta-G solvation = -20783.900605 eV Core-core repulsion = 17214.491622 eV Total energy + Delta-G solvation = -3569.408982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.025 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50642 -38.45519 -37.41311 -36.38604 -33.12766 -32.64079 -32.25166 -30.81608 -30.10121 -29.03719 -26.86460 -25.10304 -22.89445 -22.42971 -21.45712 -19.75486 -18.53231 -17.33877 -16.89124 -16.67097 -16.19852 -15.63517 -15.34678 -15.01250 -14.86884 -14.19933 -14.06965 -13.80516 -13.45048 -13.31259 -12.97045 -12.80763 -12.26710 -12.11894 -11.47652 -11.39659 -11.26276 -11.17721 -11.07132 -10.91090 -10.74594 -10.48400 -10.31946 -10.29052 -9.99286 -9.18916 -8.86445 -8.49201 -7.67868 -7.58153 -6.21263 -4.66282 0.75840 1.00715 1.49736 2.77508 3.15796 3.20443 3.22721 3.27915 4.08588 4.32670 4.39926 4.46289 4.56044 4.61973 4.74376 4.85064 4.89223 5.06334 5.08776 5.24148 5.28275 5.37439 5.50006 5.73143 5.80337 5.85410 6.05837 6.18025 6.28872 6.32302 7.00800 7.42027 7.68872 7.91038 8.03516 8.30489 9.00467 9.49222 10.56655 10.74656 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.002269 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.353720 B =12337.288847 C =13381.169978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.584 6.584 11 N -0.760 5.760 12 C 0.108 3.892 13 C 0.103 3.897 14 H 0.112 0.888 15 O -0.546 6.546 16 C 0.027 3.973 17 O -0.288 6.288 18 C 0.161 3.839 19 C -0.207 4.207 20 C -0.064 4.064 21 C -0.159 4.159 22 C -0.055 4.055 23 C -0.129 4.129 24 Br -0.037 7.037 25 H 0.269 0.731 26 H 0.387 0.613 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.374 0.626 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -26.078 0.059 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.467 6.467 11 N -0.417 5.417 12 C -0.019 4.019 13 C 0.043 3.957 14 H 0.130 0.870 15 O -0.351 6.351 16 C -0.049 4.049 17 O -0.200 6.200 18 C 0.112 3.888 19 C -0.226 4.226 20 C -0.082 4.082 21 C -0.178 4.178 22 C -0.074 4.074 23 C -0.209 4.209 24 Br 0.049 6.951 25 H 0.080 0.920 26 H 0.219 0.781 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.221 0.779 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.663 -25.744 0.563 26.169 hybrid contribution -0.339 0.656 -0.401 0.841 sum 4.324 -25.088 0.162 25.458 Atomic orbital electron populations 1.70011 1.07082 1.27415 1.35284 1.25719 0.94637 1.00339 0.92568 0.86409 0.79795 0.80889 0.79522 1.19234 1.20572 1.19238 1.20850 0.93657 0.89282 1.54288 0.91347 1.18232 0.87163 0.82369 0.76346 1.90595 1.14113 1.86833 1.55146 1.46009 1.08969 1.03982 1.82767 1.21359 0.93871 0.84985 1.01639 1.22190 0.93089 0.89817 0.90593 0.86978 1.86630 1.36751 1.96213 1.15487 1.23704 0.92557 0.86130 1.02489 1.86269 1.35667 1.11373 1.86732 1.18719 0.91365 0.84929 0.93759 1.21350 0.93339 0.99278 1.08633 1.21110 1.00260 0.91724 0.95121 1.21060 0.92779 0.99380 1.04558 1.20982 0.95741 0.94589 0.96124 1.21102 0.91167 0.93854 1.14820 1.96730 1.03169 1.97869 1.97365 0.92040 0.78103 0.92870 0.92284 0.77866 0.90487 0.91113 0.84447 0.85101 0.85086 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.83 55.55 0.66 -22.35 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 3 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.55 15.65 7.75 -12.99 -0.10 15.55 16 10 O -0.58 -18.66 15.02 5.20 0.08 -18.58 16 11 N -0.76 -16.69 5.44 -61.72 -0.34 -17.03 16 12 C 0.11 1.89 5.34 -4.04 -0.02 1.86 16 13 C 0.10 1.41 3.34 -26.73 -0.09 1.32 16 14 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 15 O -0.55 -7.82 13.05 -40.11 -0.52 -8.34 16 16 C 0.03 0.30 4.37 37.16 0.16 0.47 16 17 O -0.29 -3.67 9.44 -24.36 -0.23 -3.90 16 18 C 0.16 1.86 6.68 -39.20 -0.26 1.60 16 19 C -0.21 -1.97 9.04 -39.44 -0.36 -2.33 16 20 C -0.06 -0.50 10.04 -39.60 -0.40 -0.90 16 21 C -0.16 -1.19 10.04 -39.57 -0.40 -1.58 16 22 C -0.05 -0.47 9.78 -39.58 -0.39 -0.86 16 23 C -0.13 -1.43 6.24 -39.38 -0.25 -1.68 16 24 Br -0.04 -0.42 33.16 -68.01 -2.26 -2.67 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.39 7.80 8.33 -40.82 -0.34 7.46 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.37 4.26 9.04 45.56 0.41 4.68 16 30 H 0.08 0.77 7.66 -51.92 -0.40 0.38 16 31 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 32 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -35.51 330.20 -8.32 -43.83 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.14 Total: 8.86 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.53 Total: 0.07 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.32 Total: -39.38 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.68 Total: -30.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.26 Total: -2.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.51 -8.32 -43.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184836573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.843 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds