Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46939 * 120.00419 * 3 2 1 7 7 C 1.40055 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99346 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99987 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99794 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99771 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99881 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 59.99929 * 13 12 11 15 15 O 1.42903 * 109.46726 * 299.99685 * 13 12 11 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 11 17 17 O 1.42894 * 109.47240 * 184.99627 * 16 13 12 18 18 C 1.35917 * 116.99996 * 179.97438 * 17 16 13 19 19 C 1.38720 * 120.05801 * 0.02562 * 18 17 16 20 20 C 1.38148 * 119.95232 * 179.97438 * 19 18 17 21 21 C 1.38274 * 120.07181 * 0.02562 * 20 19 18 22 22 C 1.38241 * 120.12094 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.04551 * 359.70066 * 22 21 20 24 24 Br 1.89101 * 120.03928 * 180.27541 * 23 22 21 25 25 H 0.96997 * 119.99669 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00087 * 0.02562 * 11 9 7 27 27 H 1.08992 * 109.47085 * 59.99983 * 12 11 9 28 28 H 1.09004 * 109.46923 * 299.99567 * 12 11 9 29 29 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 30 30 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 31 31 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 32 32 H 1.07999 * 120.02528 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.96133 * 179.97438 * 20 19 18 34 34 H 1.08009 * 119.94026 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.97853 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6963 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9164 0.0011 13 6 2.2106 -6.0794 0.0016 14 1 2.8373 -6.0213 0.8916 15 8 3.0321 -6.0041 -1.1653 16 6 1.4457 -7.4044 0.0016 17 8 2.3697 -8.4879 0.1194 18 6 1.8496 -9.7436 0.1355 19 6 0.4782 -9.9288 0.0393 20 6 -0.0481 -11.2060 0.0553 21 6 0.7906 -12.2996 0.1676 22 6 2.1577 -12.1185 0.2637 23 6 2.6901 -10.8430 0.2414 24 35 4.5608 -10.5958 0.3649 25 1 -0.4849 0.8400 0.0004 26 1 2.9190 -3.6477 0.0009 27 1 0.5895 -4.9744 -0.8885 28 1 0.5901 -4.9740 0.8914 29 1 2.5400 -6.0499 -1.9964 30 1 0.7532 -7.4242 0.8433 31 1 0.8881 -7.5020 -0.9299 32 1 -0.1776 -9.0752 -0.0481 33 1 -1.1158 -11.3504 -0.0192 34 1 0.3768 -13.2972 0.1803 35 1 2.8106 -12.9743 0.3517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184836573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = -127.846747 kcal Electronic energy + Delta-G solvation = -20785.078772 eV Core-core repulsion = 17214.491622 eV Total energy + Delta-G solvation = -3570.587149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.025 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30207 -39.78164 -38.79686 -37.70566 -34.98351 -34.30004 -33.37113 -31.84330 -31.01357 -29.91561 -28.66344 -26.55851 -23.84474 -23.17148 -22.50807 -21.71950 -19.48533 -19.11967 -17.97604 -17.67349 -17.46941 -16.87221 -16.52904 -16.15087 -15.97360 -15.84241 -15.44215 -14.83717 -14.63544 -14.42972 -14.31164 -13.93317 -13.80947 -13.18652 -13.10575 -12.72691 -12.67638 -12.62616 -12.23710 -12.08462 -12.05514 -11.83726 -11.78008 -11.19788 -11.13701 -10.92544 -9.90814 -9.88478 -9.51708 -9.23908 -8.30607 -6.86545 0.08211 0.32055 0.72286 1.40465 1.43560 1.55219 1.87806 2.25766 2.45688 2.61734 3.06896 3.38690 3.61506 3.68214 3.75940 3.82271 3.91878 4.01765 4.16359 4.31066 4.32966 4.37215 4.48977 4.70123 4.75669 4.97554 5.08060 5.25257 5.31408 5.43105 5.68228 5.86435 6.16046 6.22516 6.26126 6.70554 6.86004 7.50885 8.46572 8.65431 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.002269 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.353720 B =12337.288847 C =13381.169978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.750 5.750 12 C 0.109 3.891 13 C 0.120 3.880 14 H 0.108 0.892 15 O -0.559 6.559 16 C 0.034 3.966 17 O -0.308 6.308 18 C 0.135 3.865 19 C -0.214 4.214 20 C -0.063 4.063 21 C -0.151 4.151 22 C -0.059 4.059 23 C -0.149 4.149 24 Br -0.052 7.052 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.387 0.613 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -27.021 -0.074 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.611 4.611 8 H 0.103 0.897 9 C 0.343 3.657 10 O -0.519 6.519 11 N -0.405 5.405 12 C -0.016 4.016 13 C 0.060 3.940 14 H 0.126 0.874 15 O -0.366 6.366 16 C -0.042 4.042 17 O -0.221 6.221 18 C 0.087 3.913 19 C -0.233 4.233 20 C -0.081 4.081 21 C -0.170 4.170 22 C -0.079 4.079 23 C -0.229 4.229 24 Br 0.033 6.967 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.236 0.764 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.037 -26.748 0.423 27.221 hybrid contribution -0.489 0.787 -0.371 0.998 sum 4.548 -25.960 0.052 26.356 Atomic orbital electron populations 1.70167 1.09436 1.29058 1.36373 1.26955 0.95549 1.04888 0.91180 0.85080 0.78227 0.74795 0.80260 1.17926 1.19771 1.17918 1.21407 0.94717 0.90225 1.54790 0.89692 1.18546 0.86792 0.84233 0.76087 1.90548 1.16019 1.87954 1.57376 1.45666 1.09440 1.04270 1.81131 1.21487 0.94498 0.84469 1.01184 1.21882 0.91967 0.89705 0.90405 0.87392 1.86599 1.37447 1.96239 1.16279 1.23537 0.91990 0.84712 1.03917 1.86197 1.36339 1.12095 1.87446 1.18953 0.92407 0.84372 0.95542 1.21568 0.92618 1.00599 1.08558 1.21508 1.01833 0.91044 0.93742 1.21470 0.92121 1.00824 1.02605 1.21286 0.96806 0.94186 0.95578 1.21327 0.90493 0.94817 1.16223 1.96696 1.04542 1.97987 1.97484 0.91493 0.76997 0.93128 0.92909 0.76425 0.89316 0.89506 0.83543 0.82344 0.82010 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.10 11.83 21.84 0.26 -49.84 16 2 C 0.03 1.65 5.50 85.31 0.47 2.12 16 3 Si 1.00 41.04 29.56 68.60 2.03 43.07 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.57 -32.76 9.54 24.83 0.24 -32.52 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.54 31.10 7.75 86.36 0.67 31.77 16 10 O -0.63 -41.71 15.02 -4.31 -0.06 -41.78 16 11 N -0.75 -33.29 5.44 -467.41 -2.54 -35.83 16 12 C 0.11 3.84 5.34 86.38 0.46 4.31 16 13 C 0.12 3.23 3.34 30.60 0.10 3.33 16 14 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 15 O -0.56 -15.64 13.05 -144.32 -1.88 -17.52 16 16 C 0.03 0.74 4.37 71.98 0.31 1.05 16 17 O -0.31 -7.67 9.44 -87.96 -0.83 -8.50 16 18 C 0.14 3.00 6.68 22.52 0.15 3.15 16 19 C -0.21 -3.70 9.04 22.36 0.20 -3.50 16 20 C -0.06 -0.81 10.04 22.26 0.22 -0.58 16 21 C -0.15 -1.80 10.04 22.28 0.22 -1.57 16 22 C -0.06 -0.91 9.78 22.27 0.22 -0.70 16 23 C -0.15 -3.16 6.24 22.40 0.14 -3.02 16 24 Br -0.05 -1.18 33.16 -20.37 -0.68 -1.85 16 25 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 26 H 0.40 15.98 8.33 -92.71 -0.77 15.21 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.39 8.51 9.04 -74.06 -0.67 7.84 16 30 H 0.09 1.69 7.66 -2.38 -0.02 1.67 16 31 H 0.09 1.57 7.66 -2.39 -0.02 1.55 16 32 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.72 330.20 -0.60 -79.32 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.30 Total: 29.10 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 3.41 Total: 3.84 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.29 Total: -85.67 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -2.78 Total: -67.80 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -0.68 Total: -1.85 kcal Total: -78.72 -0.60 -79.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184836573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.525 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds