Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.50700 * 109.47001 * 239.99647 * 2 1 3 5 5 O 1.20827 * 120.00023 * 239.99981 * 4 2 1 6 6 O 1.34227 * 119.99767 * 60.00631 * 4 2 1 7 7 N 1.46505 * 109.46899 * 119.99977 * 2 1 3 8 8 C 1.35817 * 126.05046 * 164.99933 * 7 2 1 9 9 C 1.35771 * 107.55887 * 180.02562 * 8 7 2 10 10 N 1.40701 * 126.08327 * 179.97438 * 9 8 7 11 11 C 1.34783 * 120.00159 * 179.97438 * 10 9 8 12 12 O 1.21578 * 119.99742 * 359.97438 * 11 10 9 13 13 C 1.47867 * 120.00054 * 179.97438 * 11 10 9 14 14 C 1.39928 * 120.02721 * 359.73018 * 13 11 10 15 15 C 1.38325 * 120.35594 * 179.68932 * 14 13 11 16 16 C 1.37747 * 120.41272 * 0.60453 * 15 14 13 17 17 C 1.40746 * 120.04264 * 359.67566 * 16 15 14 18 18 C 1.41441 * 120.17820 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99923 * 24.44367 * 18 17 16 20 20 C 1.39936 * 119.99841 * 204.43578 * 18 17 16 21 21 N 1.30828 * 120.00196 * 17.88561 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 197.88011 * 20 18 17 23 23 H 1.48501 * 109.47136 * 60.00544 * 22 20 18 24 24 H 1.48498 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47459 * 300.00412 * 22 20 18 26 26 C 1.38997 * 120.02531 * 179.97438 * 13 11 10 27 27 C 1.40265 * 107.83508 * 359.97438 * 9 8 7 28 28 N 1.30824 * 108.33409 * 359.72208 * 27 9 8 29 29 H 1.09001 * 109.47137 * 60.00053 * 1 2 3 30 30 H 1.09000 * 109.47248 * 299.99713 * 1 2 3 31 31 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46869 * 60.00055 * 3 2 1 33 33 H 1.09003 * 109.46510 * 179.97438 * 3 2 1 34 34 H 1.08989 * 109.46961 * 299.99564 * 3 2 1 35 35 H 0.96703 * 116.99972 * 179.97438 * 6 4 2 36 36 H 1.08001 * 126.22210 * 359.97438 * 8 7 2 37 37 H 0.97003 * 120.00181 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.81952 * 359.97438 * 14 13 11 39 39 H 1.08002 * 119.79045 * 180.29922 * 15 14 13 40 40 H 1.08003 * 119.98205 * 179.69495 * 16 15 14 41 41 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.20267 * 359.97438 * 26 13 11 43 43 H 1.08002 * 125.83202 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 7 2.0183 -0.6906 1.1962 8 6 3.2847 -1.1368 1.4006 9 6 3.3216 -1.7171 2.6275 10 7 4.4463 -2.3097 3.2304 11 6 4.3443 -2.8522 4.4601 12 8 3.2807 -2.8289 5.0485 13 6 5.5262 -3.4755 5.0935 14 6 6.7493 -3.5076 4.4145 15 6 7.8608 -4.0832 5.0032 16 6 7.7738 -4.6424 6.2590 17 6 6.5506 -4.6249 6.9550 18 6 6.4582 -5.1978 8.2449 19 1 7.3413 -5.2890 8.8597 20 6 5.2224 -5.6462 8.7243 21 7 4.2379 -5.8657 7.8911 22 14 4.9783 -5.9317 10.5542 23 1 5.2084 -4.6616 11.2884 24 1 3.5918 -6.4025 10.8011 25 1 5.9409 -6.9585 11.0277 26 6 5.4218 -4.0345 6.3618 27 6 2.0390 -1.6207 3.1870 28 7 1.2634 -1.0021 2.3342 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8899 35 1 2.0541 -0.7407 -3.2088 36 1 4.1119 -1.0471 0.7120 37 1 5.2950 -2.3280 2.7612 38 1 6.8269 -3.0764 3.4273 39 1 8.8015 -4.0986 4.4728 40 1 8.6448 -5.0944 6.7100 41 1 3.3815 -6.1769 8.2234 42 1 4.4790 -4.0152 6.8881 43 1 1.7435 -1.9894 4.1582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192996709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -17.248330 kcal Electronic energy + Delta-G solvation = -28856.888137 eV Core-core repulsion = 24676.083276 eV Total energy + Delta-G solvation = -4180.804861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70079 -40.50159 -39.07268 -37.09826 -36.66732 -35.98040 -34.13444 -33.63413 -30.54875 -30.41790 -29.47464 -28.43721 -27.74459 -25.32474 -25.07031 -23.16234 -22.57235 -21.09156 -20.62117 -20.42435 -19.07825 -18.40775 -17.76273 -17.54725 -16.80404 -16.27154 -15.92998 -15.48709 -15.10600 -14.92943 -14.69863 -14.30165 -14.25904 -13.98233 -13.80027 -13.22766 -13.17527 -12.90178 -12.77792 -12.66743 -12.62683 -12.47807 -12.46719 -12.09033 -11.86096 -11.68483 -11.19013 -11.10301 -11.00030 -10.77756 -10.65711 -10.52795 -10.37302 -10.02642 -9.72003 -9.33007 -9.21866 -9.05181 -7.76559 -7.54539 -7.38860 -6.81089 -4.42555 1.58863 1.64123 1.98416 2.19446 2.64213 2.80266 3.02914 3.07824 3.09503 3.17289 3.66367 3.90485 3.94341 4.09715 4.18539 4.46401 4.63124 4.76382 5.02890 5.06467 5.18566 5.26358 5.29173 5.54601 5.58154 5.58717 5.63270 5.81484 5.85138 5.92705 6.08287 6.24775 6.47982 6.69712 6.88168 6.96240 6.98855 7.16802 7.21538 7.31818 7.35637 7.65324 7.70131 7.76493 7.90861 8.05331 8.16493 8.48198 8.78287 8.81087 8.86534 10.13490 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002318 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.733385 B =12077.840445 C =12986.447706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.213 3.787 3 C -0.157 4.157 4 C 0.473 3.527 5 O -0.491 6.491 6 O -0.507 6.507 7 N -0.375 5.375 8 C 0.028 3.972 9 C 0.021 3.979 10 N -0.650 5.650 11 C 0.568 3.432 12 O -0.534 6.534 13 C -0.126 4.126 14 C -0.219 4.219 15 C -0.096 4.096 16 C -0.211 4.211 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.089 4.089 27 C 0.062 3.938 28 N -0.283 5.283 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.170 0.830 37 H 0.409 0.591 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.286 0.714 42 H 0.136 0.864 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 12.703 -17.633 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.126 3.874 3 C -0.215 4.215 4 C 0.311 3.689 5 O -0.376 6.376 6 O -0.319 6.319 7 N -0.163 5.163 8 C -0.117 4.117 9 C -0.084 4.084 10 N -0.295 5.295 11 C 0.360 3.640 12 O -0.411 6.411 13 C -0.129 4.129 14 C -0.240 4.240 15 C -0.114 4.114 16 C -0.231 4.231 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.406 5.406 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.109 4.109 27 C -0.127 4.127 28 N -0.103 5.103 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.276 0.724 36 H 0.187 0.813 37 H 0.245 0.755 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.153 0.847 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.337 13.015 -17.163 22.755 hybrid contribution 1.579 -1.056 -0.040 1.900 sum -5.758 11.959 -17.203 21.729 Atomic orbital electron populations 1.21946 0.88681 1.04586 1.04758 1.19800 0.97818 0.91500 0.78233 1.22297 1.02514 0.91701 1.05012 1.23366 0.77626 0.82720 0.85140 1.90824 1.34776 1.25161 1.86856 1.84464 1.72245 1.58880 1.16284 1.47879 1.07008 1.48263 1.13116 1.21678 0.89467 1.03438 0.97138 1.17789 0.90058 1.06460 0.94085 1.42964 1.10688 1.57778 1.18107 1.18899 0.89251 0.76545 0.79311 1.90565 1.29621 1.57892 1.63020 1.19331 0.91622 1.04730 0.97217 1.20332 0.93247 1.10896 0.99485 1.20426 0.96398 0.98960 0.95658 1.21104 0.98502 1.07898 0.95611 1.17596 0.90668 0.89482 0.92677 1.19561 0.94724 1.34757 0.99717 0.90062 1.25970 0.95389 0.93066 1.00201 1.69776 1.03720 1.30477 1.36606 0.86317 0.78169 0.79751 0.82257 1.18689 1.20197 1.18978 1.21641 1.00424 0.95840 0.93025 1.24691 0.90068 0.97378 1.00514 1.77330 1.19106 1.20467 0.93436 0.89584 0.89068 0.91010 0.89652 0.91229 0.89111 0.72407 0.81272 0.75468 0.89233 0.88833 0.88568 0.90298 0.84671 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.02 37.16 0.30 -0.84 16 2 C 0.21 2.02 1.18 -132.97 -0.16 1.87 16 3 C -0.16 -1.07 8.66 37.16 0.32 -0.74 16 4 C 0.47 4.43 6.86 36.01 0.25 4.68 16 5 O -0.49 -6.37 15.23 -18.75 -0.29 -6.66 16 6 O -0.51 -2.81 13.23 -39.25 -0.52 -3.33 16 7 N -0.38 -5.06 3.36 -49.39 -0.17 -5.22 16 8 C 0.03 0.40 9.67 -16.67 -0.16 0.24 16 9 C 0.02 0.35 6.90 -83.90 -0.58 -0.23 16 10 N -0.65 -11.50 5.42 -10.88 -0.06 -11.56 16 11 C 0.57 12.40 7.74 -12.32 -0.10 12.30 16 12 O -0.53 -12.84 13.48 5.30 0.07 -12.77 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 14 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 15 C -0.10 -2.03 10.01 -39.73 -0.40 -2.42 16 16 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 17 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 18 C -0.46 -11.93 9.05 -37.73 -0.34 -12.27 16 19 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.53 10.96 55.55 0.61 -19.92 16 22 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.09 -2.34 8.24 -38.44 -0.32 -2.66 16 27 C 0.06 1.10 10.84 -17.22 -0.19 0.92 16 28 N -0.28 -4.50 11.65 30.71 0.36 -4.15 16 29 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.41 8.11 -51.94 -0.42 -0.02 16 35 H 0.42 0.68 9.10 45.56 0.41 1.09 16 36 H 0.17 2.05 7.49 -52.49 -0.39 1.66 16 37 H 0.41 6.14 6.84 -40.82 -0.28 5.86 16 38 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.29 6.93 8.30 -40.82 -0.34 6.59 16 42 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 43 H 0.21 4.04 5.91 -52.49 -0.31 3.73 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -32.69 369.80 -7.00 -39.68 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.13 Total: 13.97 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.42 Total: -9.26 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.74 Total: -40.85 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.73 Total: -22.76 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.69 -7.00 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192996709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.433 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds