Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99995 * 2 1 4 4 N 1.46498 * 109.47222 * 124.99576 * 3 2 1 5 5 C 1.38855 * 119.99856 * 275.00054 * 4 3 2 6 6 C 1.39573 * 119.84026 * 118.50594 * 5 4 3 7 7 C 1.36337 * 120.16171 * 179.72029 * 6 5 4 8 8 C 1.40894 * 119.83607 * 0.54425 * 7 6 5 9 9 C 1.41132 * 120.15572 * 179.70386 * 8 7 6 10 10 H 1.08005 * 119.99435 * 209.49609 * 9 8 7 11 11 C 1.39860 * 120.00462 * 29.49989 * 9 8 7 12 12 N 1.30905 * 119.99830 * 11.79050 * 11 9 8 13 13 Si 1.86798 * 120.00346 * 191.78962 * 11 9 8 14 14 H 1.48507 * 109.46849 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47115 * 119.99743 * 13 11 9 16 16 H 1.48496 * 109.47378 * 240.00007 * 13 11 9 17 17 C 1.40891 * 119.68458 * 359.72545 * 8 7 6 18 18 C 1.36334 * 119.83916 * 359.97438 * 17 8 7 19 19 S 1.65598 * 120.00091 * 94.99748 * 4 3 2 20 20 O 1.42101 * 106.40338 * 154.33000 * 19 4 3 21 21 O 1.42106 * 106.40067 * 21.41194 * 19 4 3 22 22 C 1.76198 * 107.21943 * 267.87516 * 19 4 3 23 23 C 1.38238 * 119.99484 * 264.48896 * 22 19 4 24 24 C 1.38237 * 119.99833 * 180.32633 * 23 22 19 25 25 C 1.38240 * 119.99929 * 359.93132 * 24 23 22 26 26 C 1.38232 * 119.99882 * 0.06404 * 25 24 23 27 27 C 1.38228 * 120.00468 * 84.76762 * 22 19 4 28 28 H 1.08005 * 120.00259 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00204 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99951 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46922 * 4.99640 * 3 2 1 32 32 H 1.08993 * 109.46806 * 244.99926 * 3 2 1 33 33 H 1.08002 * 119.92126 * 359.97111 * 6 5 4 34 34 H 1.08002 * 120.08609 * 180.27471 * 7 6 5 35 35 H 0.96994 * 120.00421 * 179.97438 * 12 11 9 36 36 H 1.08002 * 120.08001 * 179.97438 * 17 8 7 37 37 H 1.08005 * 119.92193 * 179.97438 * 18 17 8 38 38 H 1.08002 * 120.00190 * 0.27556 * 23 22 19 39 39 H 1.07998 * 120.00131 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.99640 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.00246 * 179.97438 * 26 25 24 42 42 H 1.08007 * 119.99960 * 359.72020 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5525 1.7398 2.3833 6 6 2.6031 0.8534 3.4602 7 6 2.1770 1.2487 4.6935 8 6 1.6740 2.5520 4.8768 9 6 1.2253 2.9663 6.1492 10 1 0.4440 3.7075 6.2312 11 6 1.7923 2.4171 7.3037 12 7 2.8844 1.7003 7.2193 13 14 0.9913 2.7065 8.9663 14 1 -0.2235 3.5427 8.7916 15 1 0.6117 1.4024 9.5665 16 1 1.9483 3.4040 9.8622 17 6 1.6207 3.4395 3.7839 18 6 2.0560 3.0324 2.5577 19 16 4.5712 0.8760 0.9175 20 8 5.3219 1.5444 1.9219 21 8 4.8418 1.0067 -0.4714 22 6 4.6710 -0.8446 1.2839 23 6 5.0517 -1.2615 2.5458 24 6 5.1366 -2.6114 2.8313 25 6 4.8394 -3.5443 1.8555 26 6 4.4586 -3.1274 0.5937 27 6 4.3743 -1.7775 0.3080 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4026 -0.9313 33 1 2.9845 -0.1469 3.3172 34 1 2.2209 0.5632 5.5269 35 1 3.2779 1.3198 8.0200 36 1 1.2359 4.4398 3.9171 37 1 2.0153 3.7115 1.7188 38 1 5.2836 -0.5326 3.3082 39 1 5.4344 -2.9371 3.8170 40 1 4.9053 -4.5990 2.0788 41 1 4.2269 -3.8562 -0.1688 42 1 4.0768 -1.4518 -0.6778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224668947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -14.017570 kcal Electronic energy + Delta-G solvation = -27850.873809 eV Core-core repulsion = 24080.669164 eV Total energy + Delta-G solvation = -3770.204645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.15088 -39.94614 -38.49175 -37.52750 -37.01804 -35.34809 -33.82562 -32.35878 -32.05888 -31.43803 -30.74239 -27.55557 -25.88622 -24.23372 -23.76124 -22.96067 -22.70807 -20.92128 -20.07494 -19.29822 -19.23814 -18.50413 -17.89442 -17.09240 -17.04388 -16.51941 -15.91344 -15.75343 -15.60811 -15.49684 -15.37017 -14.66617 -14.52374 -14.38378 -14.23828 -14.03424 -13.77288 -13.55074 -13.35260 -13.32419 -13.25181 -13.20633 -12.83562 -12.60561 -12.46321 -12.30383 -12.27554 -12.22847 -11.79756 -11.64353 -11.47333 -11.10842 -10.50142 -10.34153 -10.19711 -10.03920 -9.49214 -8.99999 -8.60386 -6.32090 -0.73975 -0.20238 0.28281 0.83690 1.14700 1.34830 1.40861 1.49828 1.55635 1.98617 2.22827 2.49365 2.69371 2.76560 3.23738 3.64597 3.81508 3.92221 3.95764 4.07935 4.08493 4.33171 4.36655 4.37437 4.40682 4.47006 4.67521 4.76998 4.85893 4.93523 4.96579 5.05642 5.08677 5.15341 5.25178 5.27433 5.33847 5.35816 5.45816 5.68357 5.71969 5.86018 5.86920 6.04703 6.08024 6.18893 6.37324 6.67695 6.93495 7.02343 8.36998 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.004130 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.967037 B = 6778.396619 C = 7662.394286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.190 4.190 3 C 0.132 3.868 4 N -0.917 5.917 5 C 0.023 3.977 6 C -0.109 4.109 7 C -0.166 4.166 8 C 0.083 3.917 9 C -0.491 4.491 10 H 0.080 0.920 11 C 0.032 3.968 12 N -0.830 5.830 13 Si 0.984 3.016 14 H -0.256 1.256 15 H -0.264 1.264 16 H -0.269 1.269 17 C -0.222 4.222 18 C -0.087 4.087 19 S 2.683 3.317 20 O -0.988 6.988 21 O -0.977 6.977 22 C -0.680 4.680 23 C -0.042 4.042 24 C -0.145 4.145 25 C -0.058 4.058 26 C -0.137 4.137 27 C -0.032 4.032 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.287 0.713 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -11.394 -11.243 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.747 5.747 5 C -0.071 4.071 6 C -0.130 4.130 7 C -0.186 4.186 8 C 0.080 3.920 9 C -0.521 4.521 10 H 0.098 0.902 11 C -0.182 4.182 12 N -0.457 5.457 13 Si 0.805 3.195 14 H -0.180 1.180 15 H -0.189 1.189 16 H -0.194 1.194 17 C -0.242 4.242 18 C -0.108 4.108 19 S 2.781 3.219 20 O -0.979 6.979 21 O -0.968 6.968 22 C -0.770 4.770 23 C -0.062 4.062 24 C -0.164 4.164 25 C -0.076 4.076 26 C -0.155 4.155 27 C -0.052 4.052 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.040 -10.941 -11.444 15.833 hybrid contribution -0.226 -0.231 1.311 1.350 sum -0.266 -11.172 -10.134 15.086 Atomic orbital electron populations 1.24008 0.95446 1.02890 0.97885 1.23340 0.97079 0.98325 1.02180 1.20893 0.93002 0.97433 0.87823 1.54415 1.26665 1.79546 1.14110 1.16661 1.12922 0.94038 0.83529 1.20755 1.01110 0.97533 0.93557 1.20862 1.05561 0.96659 0.95518 1.18032 0.89392 0.91213 0.93362 1.19837 1.19270 1.21929 0.91073 0.90213 1.26764 0.93850 0.92556 1.05020 1.69905 1.16208 1.26782 1.32791 0.85120 0.79139 0.79192 0.76009 1.17976 1.18912 1.19429 1.20889 1.10481 0.99097 0.93731 1.20609 0.99164 0.94038 0.96950 1.01959 0.72644 0.74830 0.72497 1.93546 1.69627 1.73650 1.61063 1.93495 1.83720 1.87053 1.32498 1.30635 1.18373 1.24672 1.03319 1.21049 0.92847 0.98272 0.94014 1.21620 1.01164 0.92062 1.01574 1.21949 0.91929 1.01371 0.92326 1.21720 1.00126 0.95354 0.98341 1.21182 0.92638 0.93776 0.97571 0.87977 0.86899 0.86901 0.88635 0.87395 0.87795 0.87713 0.90208 0.87493 0.86147 0.86379 0.83309 0.81421 0.81343 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 14.32 67.79 0.97 -2.67 16 2 C -0.19 -4.71 9.82 25.65 0.25 -4.46 16 3 C 0.13 3.71 6.02 85.64 0.52 4.22 16 4 N -0.92 -32.87 2.79 -342.70 -0.96 -33.82 16 5 C 0.02 0.97 4.85 38.67 0.19 1.16 16 6 C -0.11 -5.05 9.60 22.15 0.21 -4.84 16 7 C -0.17 -8.66 8.59 22.48 0.19 -8.47 16 8 C 0.08 4.41 5.54 -21.27 -0.12 4.30 16 9 C -0.49 -26.04 9.04 23.37 0.21 -25.83 16 10 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 11 C 0.03 1.61 5.22 85.22 0.45 2.05 16 12 N -0.83 -43.54 10.94 21.81 0.24 -43.30 16 13 Si 0.98 37.83 29.58 68.60 2.03 39.86 16 14 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 17 C -0.22 -10.71 9.74 22.48 0.22 -10.49 16 18 C -0.09 -3.78 9.35 22.15 0.21 -3.57 16 19 S 2.68 99.57 5.42 -56.49 -0.31 99.26 16 20 O -0.99 -45.53 16.41 -128.00 -2.10 -47.63 16 21 O -0.98 -35.79 15.94 -128.00 -2.04 -37.84 16 22 C -0.68 -21.31 5.64 22.27 0.13 -21.18 16 23 C -0.04 -1.34 7.84 22.27 0.17 -1.17 16 24 C -0.15 -3.49 10.05 22.27 0.22 -3.27 16 25 C -0.06 -1.04 10.05 22.27 0.22 -0.81 16 26 C -0.14 -2.46 10.05 22.27 0.22 -2.24 16 27 C -0.03 -0.78 8.56 22.27 0.19 -0.59 16 28 H 0.10 2.17 7.84 -2.91 -0.02 2.15 16 29 H 0.11 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.11 2.59 7.06 -2.91 -0.02 2.57 16 31 H 0.10 2.53 7.25 -2.38 -0.02 2.51 16 32 H 0.11 2.73 6.89 -2.39 -0.02 2.71 16 33 H 0.10 4.40 5.85 -2.91 -0.02 4.38 16 34 H 0.10 5.70 6.30 -2.91 -0.02 5.68 16 35 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.12 4.49 7.98 -2.91 -0.02 4.47 16 38 H 0.12 4.31 7.50 -2.91 -0.02 4.28 16 39 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.15 3.07 7.73 -2.91 -0.02 3.05 16 Total: -1.00 -69.12 367.54 2.35 -66.77 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 1.03 Total: 34.54 kcal Atomic # 6 Polarization: -82.31 SS G_CDS: 4.46 Total: -77.85 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -0.72 Total: -77.13 kcal Atomic # 8 Polarization: -81.32 SS G_CDS: -4.14 Total: -85.46 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: 99.57 SS G_CDS: -0.31 Total: 99.26 kcal Total: -69.12 2.35 -66.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224668947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.752 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds