Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48496 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46882 * 300.00218 * 3 2 1 6 6 H 1.48493 * 109.47029 * 60.00435 * 3 2 1 7 7 C 1.39934 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99804 * 197.86471 * 7 2 1 9 9 C 1.41400 * 120.00533 * 17.86490 * 7 2 1 10 10 C 1.40736 * 120.23784 * 24.39095 * 9 7 2 11 11 C 1.37606 * 119.75765 * 180.25093 * 10 9 7 12 12 C 1.38647 * 120.25313 * 359.47298 * 11 10 9 13 13 C 1.50700 * 119.75293 * 180.23208 * 12 11 10 14 14 F 1.39901 * 109.46974 * 0.27618 * 13 12 11 15 15 F 1.39900 * 109.47041 * 120.27388 * 13 12 11 16 16 F 1.39897 * 109.47236 * 240.27502 * 13 12 11 17 17 C 1.38672 * 120.49171 * 0.51001 * 12 11 10 18 18 I 2.09506 * 119.87878 * 179.74684 * 17 12 11 19 19 C 1.37699 * 120.24002 * 359.76528 * 17 12 11 20 20 H 0.97007 * 119.99761 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.12387 * 359.97438 * 10 9 7 22 22 H 1.08003 * 119.87268 * 179.71985 * 11 10 9 23 23 H 1.07993 * 120.13363 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3767 10 6 0.2208 -2.3614 -1.2128 11 6 -0.4128 -3.5299 -1.5685 12 6 0.0655 -4.7499 -1.1154 13 6 -0.6342 -6.0230 -1.5162 14 9 -1.7211 -5.7176 -2.3424 15 9 0.2593 -6.8484 -2.2073 16 9 -1.0902 -6.6849 -0.3712 17 6 1.1795 -4.8068 -0.2916 18 53 1.8812 -6.6601 0.3883 19 6 1.8259 -3.6496 0.0816 20 1 -0.4850 0.8401 0.0004 21 1 -0.1512 -1.4127 -1.5702 22 1 -1.2838 -3.4969 -2.2063 23 1 2.6936 -3.6960 0.7229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238570572.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = -125.352787 kcal Electronic energy + Delta-G solvation = -15779.159946 eV Core-core repulsion = 12422.133457 eV Total energy + Delta-G solvation = -3357.026489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 341.942 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.39092 -46.93799 -46.78911 -38.04295 -34.33246 -31.19424 -30.79331 -27.19469 -26.75704 -23.74873 -21.17723 -20.71625 -17.69969 -17.68616 -17.36869 -17.25962 -15.54726 -14.13027 -13.98113 -13.78613 -13.58646 -13.39883 -13.32058 -13.07498 -13.02481 -12.52566 -12.09380 -12.01754 -11.51582 -11.33693 -11.06006 -10.72233 -10.05796 -9.75029 -9.68037 -9.36234 -9.09813 -8.02729 -7.79511 -7.19132 -4.83119 1.88204 2.12135 2.50711 2.85886 2.89252 2.94276 3.58016 3.64767 4.11592 4.77976 4.92145 5.06651 5.38621 5.89699 6.49433 6.56860 6.61140 6.79235 6.94451 7.14059 7.42781 7.57619 7.73221 8.15950 8.40289 8.43823 9.73635 Molecular weight = 341.94amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.005726 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.867820 B = 4888.949314 C = 5935.865985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.089 0.911 9 C 0.126 3.874 10 C -0.160 4.160 11 C -0.052 4.052 12 C -0.298 4.298 13 C 0.510 3.490 14 F -0.191 7.191 15 F -0.185 7.185 16 F -0.185 7.185 17 C -0.008 4.008 18 I -0.087 7.087 19 C -0.190 4.190 20 H 0.289 0.711 21 H 0.130 0.870 22 H 0.110 0.890 23 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -6.644 -0.124 6.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.107 0.893 9 C 0.121 3.879 10 C -0.180 4.180 11 C -0.073 4.073 12 C -0.304 4.304 13 C 0.456 3.544 14 F -0.172 7.172 15 F -0.167 7.167 16 F -0.167 7.167 17 C -0.148 4.148 18 I 0.064 6.936 19 C -0.212 4.212 20 H 0.100 0.900 21 H 0.148 0.852 22 H 0.128 0.872 23 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.077 -7.823 0.367 8.102 hybrid contribution -0.340 1.612 -0.401 1.695 sum 1.737 -6.212 -0.033 6.450 Atomic orbital electron populations 1.69802 1.07877 1.30357 1.31140 1.26092 0.94890 1.02097 0.91805 0.86097 0.81046 0.79844 0.79018 1.17947 1.19238 1.19531 1.19849 0.98527 0.90842 1.37027 0.89285 1.17741 0.90750 0.91643 0.87798 1.21368 0.99084 0.96822 1.00681 1.20464 0.98023 0.91096 0.97684 1.18877 1.04161 0.91485 1.15881 1.18460 0.76491 0.85191 0.74284 1.93067 1.57309 1.93219 1.73610 1.93158 1.68199 1.75070 1.80247 1.93162 1.89625 1.83107 1.50763 1.23274 0.97545 0.93721 1.00260 1.96491 1.87799 1.20825 1.88525 1.20907 1.03433 0.90879 1.05976 0.89964 0.85226 0.87216 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.54 10.95 55.55 0.61 -16.93 14 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 14 3 Si 0.92 16.43 29.60 -169.99 -5.03 11.40 14 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 14 6 H -0.27 -4.81 7.11 56.52 0.40 -4.40 14 7 C -0.44 -10.16 9.05 -37.74 -0.34 -10.50 14 8 H 0.09 1.98 7.91 -52.48 -0.42 1.57 14 9 C 0.13 3.01 5.57 -106.83 -0.60 2.41 14 10 C -0.16 -3.75 8.70 -38.87 -0.34 -4.09 14 11 C -0.05 -1.15 9.40 -39.66 -0.37 -1.52 14 12 C -0.30 -6.51 5.40 -104.31 -0.56 -7.07 14 13 C 0.51 10.29 2.81 36.01 0.10 10.39 14 14 F -0.19 -3.69 15.95 2.25 0.04 -3.66 14 15 F -0.19 -3.65 15.81 2.25 0.04 -3.61 14 16 F -0.19 -3.70 15.81 2.25 0.04 -3.67 14 17 C -0.01 -0.17 6.13 -39.62 -0.24 -0.41 14 18 I -0.09 -1.57 36.76 -73.02 -2.68 -4.26 14 19 C -0.19 -4.27 9.50 -38.86 -0.37 -4.64 14 20 H 0.29 5.91 8.30 -40.82 -0.34 5.57 14 21 H 0.13 3.07 6.15 -52.49 -0.32 2.74 14 22 H 0.11 2.20 7.13 -52.48 -0.37 1.82 14 23 H 0.11 2.35 8.06 -52.49 -0.42 1.93 14 LS Contribution 245.45 15.07 3.70 3.70 Total: -1.00 -23.43 245.45 -6.78 -30.21 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -0.67 Total: 0.72 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.81 Total: -13.91 kcal Atomic # 7 Polarization: -17.54 SS G_CDS: 0.61 Total: -16.93 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 0.11 Total: -10.94 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Atomic # 53 Polarization: -1.57 SS G_CDS: -2.68 Total: -4.26 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -23.43 -6.78 -30.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238570572.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.139 kcal (2) G-P(sol) polarization free energy of solvation -23.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds