Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52073 * 114.26378 * 2 1 4 4 C 1.52878 * 110.51193 * 193.76472 * 3 2 1 5 5 C 1.53303 * 108.58766 * 54.89119 * 4 3 2 6 6 C 1.52877 * 108.58303 * 285.55477 * 5 4 3 7 7 C 1.52065 * 115.92739 * 213.96000 * 2 1 3 8 8 H 1.09001 * 117.25775 * 0.64057 * 7 2 1 9 9 C 1.52305 * 115.91224 * 145.67089 * 2 1 3 10 10 H 1.09001 * 117.59535 * 359.18073 * 9 2 1 11 11 C 1.50693 * 117.53977 * 213.90020 * 9 2 1 12 12 O 1.21318 * 119.99790 * 50.87411 * 11 9 2 13 13 N 1.34770 * 120.00375 * 230.86826 * 11 9 2 14 14 N 1.40105 * 120.00285 * 179.97438 * 13 11 9 15 15 C 1.29841 * 120.00143 * 180.02562 * 14 13 11 16 16 C 1.47308 * 120.00077 * 179.97438 * 15 14 13 17 17 C 1.39680 * 120.19862 * 180.29631 * 16 15 14 18 18 C 1.37891 * 119.90382 * 180.28295 * 17 16 15 19 19 C 1.38524 * 120.31825 * 359.69492 * 18 17 16 20 20 C 1.38116 * 120.40447 * 0.02610 * 19 18 17 21 21 C 1.38729 * 120.08477 * 359.97438 * 20 19 18 22 22 O 1.35602 * 120.15576 * 180.02562 * 21 20 19 23 23 C 1.34803 * 117.00227 * 5.97320 * 22 21 20 24 24 H 1.07991 * 120.00038 * 5.55342 * 23 22 21 25 25 C 1.38647 * 119.99876 * 185.55083 * 23 22 21 26 26 N 1.31559 * 120.00040 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99973 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47290 * 180.02562 * 27 25 23 29 29 H 1.48507 * 109.46877 * 299.99919 * 27 25 23 30 30 H 1.48502 * 109.47192 * 59.99623 * 27 25 23 31 31 H 1.08994 * 109.46827 * 325.72131 * 1 2 3 32 32 H 1.09000 * 109.46663 * 85.71492 * 1 2 3 33 33 H 1.08993 * 109.47074 * 205.71887 * 1 2 3 34 34 H 1.08990 * 109.26999 * 314.03383 * 3 2 1 35 35 H 1.09007 * 109.26668 * 73.53960 * 3 2 1 36 36 H 1.09000 * 109.61376 * 174.62035 * 4 3 2 37 37 H 1.08998 * 109.61530 * 295.16211 * 4 3 2 38 38 H 1.08997 * 109.61823 * 45.28507 * 5 4 3 39 39 H 1.08997 * 109.61507 * 165.64718 * 5 4 3 40 40 H 1.09003 * 109.35742 * 294.31858 * 6 5 4 41 41 H 1.08999 * 109.36054 * 174.73208 * 6 5 4 42 42 H 0.97002 * 119.99846 * 0.02562 * 13 11 9 43 43 H 1.08004 * 119.99902 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.05196 * 359.97438 * 17 16 15 45 45 H 1.07999 * 119.84125 * 179.72613 * 18 17 16 46 46 H 1.07995 * 119.79571 * 180.02562 * 19 18 17 47 47 H 1.08003 * 119.95689 * 179.97438 * 20 19 18 48 48 H 0.96991 * 120.00238 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1550 1.3864 0.0000 4 6 3.6430 1.3033 -0.3407 5 6 3.7984 0.5625 -1.6738 6 6 3.5510 -0.9272 -1.4351 7 6 2.1949 -1.1343 -0.7640 8 1 1.5418 -1.8520 -1.2604 9 6 2.1956 -1.1313 0.7726 10 1 1.5475 -1.8471 1.2781 11 6 3.4977 -0.8283 1.4681 12 8 3.5848 0.1360 2.1991 13 7 4.5653 -1.6286 1.2783 14 7 5.7760 -1.3466 1.9246 15 6 6.8046 -2.1174 1.7413 16 6 8.0777 -1.8205 2.4203 17 6 9.1887 -2.6434 2.2213 18 6 10.3758 -2.3632 2.8645 19 6 10.4744 -1.2652 3.7033 20 6 9.3857 -0.4396 3.9049 21 6 8.1833 -0.7058 3.2662 22 8 7.1136 0.1041 3.4627 23 6 7.3164 1.2199 4.1914 24 1 8.3138 1.4811 4.5128 25 6 6.2446 2.0323 4.5281 26 7 5.0296 1.7145 4.1361 27 14 6.5257 3.5790 5.5372 28 1 5.2287 4.2665 5.7612 29 1 7.1244 3.2138 6.8463 30 1 7.4477 4.4857 4.8070 31 1 -0.3633 0.8491 0.5788 32 1 -0.3633 0.0768 -1.0248 33 1 -0.3633 -0.9258 0.4459 34 1 1.6509 2.0082 -0.7397 35 1 2.0370 1.8341 0.9868 36 1 4.0545 2.3086 -0.4305 37 1 4.1682 0.7587 0.4440 38 1 3.0719 0.9438 -2.3913 39 1 4.8068 0.7114 -2.0598 40 1 4.3365 -1.3255 -0.7930 41 1 3.5659 -1.4534 -2.3896 42 1 4.4957 -2.3995 0.6936 43 1 6.7271 -2.9757 1.0903 44 1 9.1168 -3.5007 1.5684 45 1 11.2329 -3.0027 2.7134 46 1 11.4083 -1.0534 4.2025 47 1 9.4705 0.4144 4.5607 48 1 4.8837 0.9116 3.6118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245227061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = 34.748292 kcal Electronic energy + Delta-G solvation = -30991.914561 eV Core-core repulsion = 27014.623448 eV Total energy + Delta-G solvation = -3977.291113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.93671 -39.05742 -37.72826 -36.44063 -35.63999 -33.58976 -32.47534 -32.01398 -31.02297 -29.55738 -28.54961 -27.77058 -25.01195 -24.77743 -23.54601 -22.14034 -21.54904 -21.39210 -20.01345 -19.55200 -18.40593 -18.21427 -17.07640 -16.46561 -16.16852 -15.37730 -14.91611 -14.80027 -14.47877 -14.09509 -13.98331 -13.87621 -13.74399 -13.55849 -13.51165 -13.42866 -13.21104 -12.80358 -12.60328 -12.46875 -12.15635 -11.84607 -11.76619 -11.45813 -11.16925 -11.10712 -10.74804 -10.71524 -10.70136 -10.32493 -10.27788 -10.20837 -10.18147 -9.78580 -9.59425 -9.51547 -9.32753 -8.98290 -8.90118 -8.58303 -7.74022 -7.00601 -6.50352 -3.81686 1.61069 2.42895 2.86342 2.96422 3.32384 3.38070 3.47347 3.54555 3.58552 4.24212 4.51823 4.61084 4.66036 4.69937 4.94458 5.07348 5.12792 5.18917 5.26039 5.26742 5.37041 5.38168 5.51000 5.53011 5.55562 5.66386 5.67105 5.78710 5.84526 5.85342 5.88368 5.95945 6.04347 6.05918 6.09834 6.21202 6.23159 6.33202 6.46197 6.49132 6.58963 6.69846 6.82220 6.83409 7.16392 7.22682 7.37996 7.62063 7.66597 7.79728 8.17625 8.71245 9.02295 9.20041 9.81045 11.03520 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004443 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.526851 B = 6301.127829 C = 8311.274493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.147 4.147 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.131 4.131 8 H 0.108 0.892 9 C -0.179 4.179 10 H 0.129 0.871 11 C 0.551 3.449 12 O -0.455 6.455 13 N -0.591 5.591 14 N -0.208 5.208 15 C 0.108 3.892 16 C -0.154 4.154 17 C -0.041 4.041 18 C -0.230 4.230 19 C -0.060 4.060 20 C -0.233 4.233 21 C 0.166 3.834 22 O -0.137 6.137 23 C -0.486 4.486 24 H 0.081 0.919 25 C 0.012 3.988 26 N -0.844 5.844 27 Si 1.089 2.911 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.283 1.283 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.370 0.630 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.128 0.872 48 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -7.456 -10.923 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.072 4.072 3 C -0.116 4.116 4 C -0.184 4.184 5 C -0.152 4.152 6 C -0.142 4.142 7 C -0.149 4.149 8 H 0.126 0.874 9 C -0.202 4.202 10 H 0.146 0.854 11 C 0.337 3.663 12 O -0.323 6.323 13 N -0.335 5.335 14 N -0.015 5.015 15 C -0.100 4.100 16 C -0.159 4.159 17 C -0.062 4.062 18 C -0.250 4.250 19 C -0.080 4.080 20 C -0.252 4.252 21 C 0.106 3.894 22 O -0.034 6.034 23 C -0.561 4.561 24 H 0.098 0.902 25 C -0.201 4.201 26 N -0.475 5.475 27 Si 0.914 3.086 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.208 0.792 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.146 0.854 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.878 -4.609 -9.372 11.985 hybrid contribution 1.170 -2.679 -1.373 3.229 sum -4.708 -7.288 -10.745 13.811 Atomic orbital electron populations 1.21454 0.91887 1.02391 1.01822 1.21056 0.94700 0.91499 0.99933 1.20797 0.95200 0.93098 1.02503 1.22048 0.96777 1.01533 0.98061 1.21514 1.00991 0.94725 0.98004 1.21309 0.94917 0.97633 1.00327 1.22487 0.99205 1.01911 0.91321 0.87375 1.22624 0.97660 1.05091 0.94791 0.85358 1.19297 0.82413 0.82737 0.81877 1.90883 1.82128 1.25396 1.33937 1.47415 1.09538 1.29382 1.47120 1.75665 0.91060 1.21768 1.12970 1.24208 0.92274 0.95738 0.97742 1.17309 0.92326 0.99836 1.06429 1.20624 0.91571 0.96731 0.97256 1.20397 0.97767 1.01439 1.05375 1.20847 0.97066 0.93917 0.96153 1.21134 0.93686 1.03904 1.06511 1.19277 0.87829 0.89440 0.92877 1.83871 1.30106 1.29618 1.59791 1.22333 0.97761 0.99590 1.36432 0.90182 1.26414 0.91598 1.02855 0.99279 1.70356 1.20566 1.28121 1.28489 0.83233 0.76298 0.73799 0.75310 1.19907 1.20997 1.20972 0.91637 0.92023 0.92405 0.91989 0.90161 0.91992 0.88674 0.92171 0.92257 0.91065 0.91569 0.79212 0.88201 0.86908 0.87497 0.87537 0.85420 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.68 37.16 0.36 -0.86 16 2 C -0.07 -0.93 2.55 -155.81 -0.40 -1.33 16 3 C -0.08 -1.21 4.69 -27.27 -0.13 -1.34 16 4 C -0.15 -2.52 5.51 -26.64 -0.15 -2.67 16 5 C -0.11 -1.56 5.93 -26.64 -0.16 -1.72 16 6 C -0.10 -1.26 5.61 -26.94 -0.15 -1.41 16 7 C -0.13 -1.49 5.83 -90.90 -0.53 -2.02 16 8 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 9 C -0.18 -2.51 5.73 -91.79 -0.53 -3.03 16 10 H 0.13 1.55 7.95 -51.93 -0.41 1.14 16 11 C 0.55 10.45 4.32 -10.99 -0.05 10.40 16 12 O -0.46 -11.11 12.27 5.52 0.07 -11.05 16 13 N -0.59 -10.54 4.88 31.22 0.15 -10.39 16 14 N -0.21 -4.58 8.90 32.13 0.29 -4.29 16 15 C 0.11 2.08 10.75 -14.71 -0.16 1.92 16 16 C -0.15 -3.22 5.88 -104.88 -0.62 -3.84 16 17 C -0.04 -0.71 9.79 -39.17 -0.38 -1.09 16 18 C -0.23 -3.91 10.03 -39.60 -0.40 -4.30 16 19 C -0.06 -1.12 10.03 -39.52 -0.40 -1.52 16 20 C -0.23 -5.20 9.12 -39.44 -0.36 -5.56 16 21 C 0.17 4.09 6.66 -38.61 -0.26 3.83 16 22 O -0.14 -3.92 7.04 0.58 0.00 -3.91 16 23 C -0.49 -14.06 9.44 30.88 0.29 -13.77 16 24 H 0.08 2.18 5.31 -52.49 -0.28 1.90 16 25 C 0.01 0.34 5.49 -17.52 -0.10 0.25 16 26 N -0.84 -26.37 13.70 55.48 0.76 -25.61 16 27 Si 1.09 24.82 29.92 -169.99 -5.09 19.73 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 30 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.45 7.90 -51.92 -0.41 1.04 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 1.99 3.86 -51.93 -0.20 1.79 16 38 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.95 4.78 -51.93 -0.25 0.70 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.37 5.08 7.56 -182.59 -1.38 3.69 16 43 H 0.10 1.44 8.02 -52.48 -0.42 1.02 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.13 2.90 5.72 -52.48 -0.30 2.60 16 48 H 0.32 10.24 5.14 -40.82 -0.21 10.03 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -34.82 378.18 -9.92 -44.74 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.70 Total: 13.14 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -4.10 Total: -28.06 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 1.20 Total: -40.29 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.07 Total: -14.96 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.82 -9.92 -44.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245227061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.488 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds