Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47153 * 2 1 4 4 C 1.53007 * 109.47149 * 119.99621 * 2 1 3 5 5 C 1.47194 * 109.46874 * 185.00174 * 4 2 1 6 6 C 3.47005 * 155.08279 * 111.44036 * 2 1 3 7 7 C 4.84766 * 162.14253 * 106.83259 * 2 1 3 8 8 N 1.46895 * 109.47119 * 127.86321 * 7 6 5 9 9 C 1.46840 * 111.00367 * 293.95348 * 8 7 6 10 10 C 1.53035 * 109.52994 * 174.15975 * 9 8 7 11 11 C 1.53125 * 109.27580 * 59.17458 * 10 9 8 12 12 C 1.53114 * 109.16368 * 302.35133 * 11 10 9 13 13 C 1.46854 * 110.99648 * 169.69909 * 8 7 6 14 14 H 1.09000 * 109.42692 * 65.80880 * 13 8 7 15 15 C 1.50699 * 109.49644 * 305.84056 * 13 8 7 16 16 C 1.38672 * 120.41724 * 139.92429 * 15 13 8 17 17 C 1.38628 * 118.41703 * 180.02562 * 16 15 13 18 18 C 1.38228 * 119.16515 * 359.97438 * 17 16 15 19 19 N 1.31850 * 120.76044 * 0.02562 * 18 17 16 20 20 C 1.31886 * 121.72924 * 359.69926 * 19 18 17 21 21 O 1.42901 * 109.47254 * 239.99562 * 2 1 3 22 22 C 1.42903 * 113.99660 * 89.99967 * 21 2 1 23 23 C 1.50708 * 109.46663 * 179.97438 * 22 21 2 24 24 H 1.07994 * 119.99904 * 359.97438 * 23 22 21 25 25 C 1.37877 * 119.99799 * 180.02562 * 23 22 21 26 26 N 1.31510 * 119.99979 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99750 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47063 * 90.00410 * 27 25 23 29 29 H 1.48506 * 109.46582 * 209.99830 * 27 25 23 30 30 H 1.48501 * 109.47326 * 330.00011 * 27 25 23 31 31 H 1.08998 * 109.46890 * 60.00620 * 1 2 3 32 32 H 1.09004 * 109.46485 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47098 * 300.00477 * 1 2 3 34 34 H 1.08993 * 109.46758 * 65.00249 * 4 2 1 35 35 H 1.09000 * 109.47027 * 305.00185 * 4 2 1 36 36 H 1.09003 * 109.47155 * 7.86227 * 7 6 5 37 37 H 1.09000 * 109.47021 * 247.86367 * 7 6 5 38 38 H 1.09001 * 109.46294 * 54.14190 * 9 8 7 39 39 H 1.09003 * 109.45458 * 294.17243 * 9 8 7 40 40 H 1.09005 * 109.50290 * 299.24575 * 10 9 8 41 41 H 1.08998 * 109.50756 * 179.11825 * 10 9 8 42 42 H 1.08998 * 109.52257 * 182.44326 * 11 10 9 43 43 H 1.09007 * 109.51539 * 62.25842 * 11 10 9 44 44 H 1.09002 * 109.50377 * 177.59436 * 12 11 10 45 45 H 1.09003 * 109.50316 * 297.67431 * 12 11 10 46 46 H 1.08001 * 120.79279 * 0.02562 * 16 15 13 47 47 H 1.08006 * 120.41395 * 180.02562 * 17 16 15 48 48 H 1.07997 * 119.61755 * 179.97438 * 18 17 16 49 49 H 1.08001 * 119.61996 * 180.31202 * 20 19 18 50 50 H 1.08997 * 109.47200 * 300.00043 * 22 21 2 51 51 H 1.08996 * 109.47061 * 60.00251 * 22 21 2 52 52 H 0.97000 * 119.99926 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5070 -0.6173 1.3113 6 6 4.6771 -0.5344 1.3608 7 6 6.1441 -0.4305 1.4228 8 7 6.6180 0.4553 0.3511 9 6 6.3652 -0.1347 -0.9696 10 6 6.7365 0.8732 -2.0597 11 6 8.2152 1.2460 -1.9211 12 6 8.4613 1.8131 -0.5203 13 6 8.0398 0.7786 0.5258 14 1 8.6352 -0.1260 0.4023 15 6 8.2618 1.3411 1.9061 16 6 9.3857 0.9860 2.6366 17 6 9.5482 1.5277 3.9023 18 6 8.5917 2.3979 4.3905 19 7 7.5351 2.7132 3.6675 20 6 7.3506 2.2214 2.4578 21 8 2.0064 -0.6737 -1.1667 22 6 2.2001 0.1828 -2.2941 23 6 2.7015 -0.6284 -3.4610 24 1 2.8571 -1.6916 -3.3523 25 6 2.9627 -0.0131 -4.6669 26 7 3.3997 -0.7211 -5.6853 27 14 2.6956 1.8263 -4.8540 28 1 3.9448 2.5465 -4.4990 29 1 2.3301 2.1327 -6.2604 30 1 1.5996 2.2617 -3.9515 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7517 -1.7714 1.2057 35 1 1.6054 -0.2616 2.1370 36 1 6.5841 -1.4199 1.2977 37 1 6.4388 -0.0214 2.3892 38 1 5.3094 -0.3913 -1.0567 39 1 6.9686 -1.0349 -1.0866 40 1 6.1239 1.7684 -1.9516 41 1 6.5634 0.4293 -3.0401 42 1 8.4732 1.9964 -2.6683 43 1 8.8299 0.3579 -2.0678 44 1 9.5206 2.0407 -0.4008 45 1 7.8764 2.7233 -0.3882 46 1 10.1171 0.3037 2.2292 47 1 10.4118 1.2735 4.4991 48 1 8.7107 2.8238 5.3757 49 1 6.4751 2.5067 1.8934 50 1 1.2538 0.6545 -2.5588 51 1 2.9320 0.9512 -2.0450 52 1 3.5838 -0.2881 -6.5336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245238621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = 30.765609 kcal Electronic energy + Delta-G solvation = -30383.426192 eV Core-core repulsion = 26541.795471 eV Total energy + Delta-G solvation = -3841.630721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.72498 -38.76479 -37.62809 -34.65670 -33.54755 -33.31846 -32.44552 -32.02405 -30.99626 -29.28960 -28.00389 -27.76699 -25.76617 -24.13436 -23.76120 -22.82621 -21.96773 -21.43198 -20.87123 -19.58684 -17.31888 -17.00899 -16.59339 -16.56875 -16.10306 -15.98902 -14.96456 -14.87899 -14.60741 -14.57462 -14.21420 -14.13758 -14.04272 -13.45674 -13.33058 -13.24229 -13.22801 -13.04970 -12.89815 -12.63669 -12.50048 -12.31210 -12.12327 -11.73418 -11.69393 -11.58975 -11.22370 -10.90298 -10.83712 -10.60980 -10.52939 -10.41838 -10.29400 -9.95783 -9.85275 -9.62835 -9.50891 -9.39698 -9.16003 -9.00322 -8.81822 -8.42547 -8.29950 -6.10967 -4.09136 0.92305 1.09146 2.87373 3.11815 3.24760 3.32127 3.34423 3.63315 4.00782 4.25432 4.36197 4.48254 4.59944 4.63952 4.67169 4.81062 4.87128 4.92336 5.02281 5.12845 5.20886 5.24979 5.30711 5.41633 5.45108 5.47671 5.50556 5.53279 5.62201 5.67080 5.73002 5.81253 5.83800 5.88766 5.96272 5.97507 6.01115 6.05335 6.12572 6.13949 6.17092 6.31666 6.38231 6.51424 6.53427 6.54596 6.66879 6.68905 7.04999 7.08901 7.16297 7.62007 7.84627 8.02422 8.07081 8.68422 9.00660 9.49260 11.01889 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003569 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.773004 B = 7843.235496 C = 9567.039962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.003 4.003 5 C -0.147 4.147 6 C -0.193 4.193 7 C 0.175 3.825 8 N -0.528 5.528 9 C 0.059 3.941 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.104 4.104 13 C 0.131 3.869 14 H 0.052 0.948 15 C -0.130 4.130 16 C -0.074 4.074 17 C -0.176 4.176 18 C 0.091 3.909 19 N -0.486 5.486 20 C 0.126 3.874 21 O -0.371 6.371 22 C 0.171 3.829 23 C -0.513 4.513 24 H 0.081 0.919 25 C 0.076 3.924 26 N -0.895 5.895 27 Si 0.869 3.131 28 H -0.272 1.272 29 H -0.283 1.283 30 H -0.267 1.267 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.152 0.848 49 H 0.164 0.836 50 H 0.000 1.000 51 H -0.002 1.002 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 4.560 17.693 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.027 3.973 3 H 0.072 0.928 4 C -0.040 4.040 5 C -0.148 4.148 6 C -0.193 4.193 7 C 0.049 3.951 8 N -0.253 5.253 9 C -0.068 4.068 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.142 4.142 13 C 0.022 3.978 14 H 0.070 0.930 15 C -0.132 4.132 16 C -0.100 4.100 17 C -0.196 4.196 18 C -0.066 4.066 19 N -0.195 5.195 20 C -0.031 4.031 21 O -0.290 6.290 22 C 0.096 3.904 23 C -0.551 4.551 24 H 0.099 0.901 25 C -0.126 4.126 26 N -0.534 5.534 27 Si 0.695 3.305 28 H -0.197 1.197 29 H -0.209 1.209 30 H -0.191 1.191 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.169 0.831 49 H 0.181 0.819 50 H 0.018 0.982 51 H 0.016 0.984 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.525 5.387 17.846 21.407 hybrid contribution 0.968 -0.125 -0.645 1.170 sum 11.493 5.262 17.201 21.346 Atomic orbital electron populations 1.22278 0.96361 1.02596 1.01711 1.21856 0.92864 0.95772 0.86833 0.92787 1.18844 0.84932 1.02583 0.97612 1.22118 0.93413 1.00241 0.99048 1.21655 0.92911 1.02017 1.02742 1.18817 0.85500 0.95313 0.95482 1.61899 1.15503 1.44951 1.02939 1.22154 1.03136 0.95084 0.86383 1.21567 0.95100 0.99947 0.98787 1.21617 0.97491 1.00665 0.96054 1.21614 1.00559 0.98282 0.93771 1.20473 0.89148 0.97428 0.90772 0.93017 1.20875 0.96039 0.99326 0.97005 1.21477 0.96615 0.98014 0.93909 1.22082 1.01157 0.99607 0.96766 1.22787 0.89748 0.94631 0.99384 1.67796 1.21322 1.23637 1.06716 1.22838 0.98132 0.91470 0.90703 1.87962 1.85810 1.35701 1.19504 1.20606 0.94242 0.90894 0.84669 1.20847 1.43829 0.97319 0.93080 0.90108 1.24705 0.94697 0.97784 0.95398 1.69873 1.45362 1.35800 1.02375 0.86957 0.79397 0.86367 0.77735 1.19723 1.20915 1.19148 0.92115 0.91843 0.92443 0.89117 0.89146 0.93040 0.89419 0.88533 0.94923 0.91126 0.90339 0.91649 0.92287 0.91701 0.90828 0.85035 0.84966 0.83057 0.81870 0.98227 0.98399 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.53 37.16 0.35 -2.20 16 2 C 0.09 1.51 2.69 -26.73 -0.07 1.44 16 3 H 0.05 0.97 7.78 -51.93 -0.40 0.57 16 4 C 0.00 -0.05 5.42 -29.52 -0.16 -0.21 16 5 C -0.15 -2.53 13.10 -37.13 -0.49 -3.01 16 6 C -0.19 -3.23 12.36 -37.12 -0.46 -3.69 16 7 C 0.18 2.45 5.06 -6.61 -0.03 2.41 16 8 N -0.53 -7.39 3.85 -231.57 -0.89 -8.28 16 9 C 0.06 0.96 5.30 -3.84 -0.02 0.94 16 10 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 11 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 12 C -0.10 -1.16 5.35 -26.65 -0.14 -1.30 16 13 C 0.13 1.49 2.06 -68.87 -0.14 1.35 16 14 H 0.05 0.56 8.03 -51.93 -0.42 0.14 16 15 C -0.13 -1.39 3.60 -104.48 -0.38 -1.77 16 16 C -0.07 -0.65 9.82 -39.28 -0.39 -1.04 16 17 C -0.18 -1.43 10.11 -39.44 -0.40 -1.83 16 18 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 19 N -0.49 -6.01 10.36 -13.25 -0.14 -6.14 16 20 C 0.13 1.54 9.25 -17.55 -0.16 1.38 16 21 O -0.37 -8.53 9.71 -35.23 -0.34 -8.87 16 22 C 0.17 4.31 4.57 36.01 0.16 4.47 16 23 C -0.51 -14.90 9.99 -34.44 -0.34 -15.24 16 24 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 25 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 26 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 27 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 31 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.09 1.14 5.77 -51.93 -0.30 0.84 16 38 H 0.10 1.94 7.12 -51.93 -0.37 1.57 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 48 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.16 2.16 7.74 -52.49 -0.41 1.75 16 50 H 0.00 0.00 6.93 -51.93 -0.36 -0.36 16 51 H 0.00 -0.04 7.51 -51.93 -0.39 -0.43 16 52 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 420.03 15.07 6.33 6.33 Total: -1.00 -32.17 420.03 -11.20 -43.37 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.99 Total: 2.53 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.28 Total: -19.21 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.26 Total: -40.70 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.34 Total: -8.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.17 -11.20 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245238621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.135 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds