Wall clock time and date at job start Tue Mar 31 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47153 * 2 1 4 4 C 1.53007 * 109.47149 * 119.99621 * 2 1 3 5 5 C 1.47194 * 109.46874 * 185.00174 * 4 2 1 6 6 C 3.47005 * 155.08279 * 111.44036 * 2 1 3 7 7 C 4.84766 * 162.14253 * 106.83259 * 2 1 3 8 8 N 1.46895 * 109.47119 * 127.86321 * 7 6 5 9 9 C 1.46840 * 111.00367 * 293.95348 * 8 7 6 10 10 C 1.53035 * 109.52994 * 174.15975 * 9 8 7 11 11 C 1.53125 * 109.27580 * 59.17458 * 10 9 8 12 12 C 1.53114 * 109.16368 * 302.35133 * 11 10 9 13 13 C 1.46854 * 110.99648 * 169.69909 * 8 7 6 14 14 H 1.09000 * 109.42692 * 65.80880 * 13 8 7 15 15 C 1.50699 * 109.49644 * 305.84056 * 13 8 7 16 16 C 1.38672 * 120.41724 * 139.92429 * 15 13 8 17 17 C 1.38628 * 118.41703 * 180.02562 * 16 15 13 18 18 C 1.38228 * 119.16515 * 359.97438 * 17 16 15 19 19 N 1.31850 * 120.76044 * 0.02562 * 18 17 16 20 20 C 1.31886 * 121.72924 * 359.69926 * 19 18 17 21 21 O 1.42901 * 109.47254 * 239.99562 * 2 1 3 22 22 C 1.42903 * 113.99660 * 89.99967 * 21 2 1 23 23 C 1.50708 * 109.46663 * 179.97438 * 22 21 2 24 24 H 1.07994 * 119.99904 * 359.97438 * 23 22 21 25 25 C 1.37877 * 119.99799 * 180.02562 * 23 22 21 26 26 N 1.31510 * 119.99979 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99750 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47063 * 90.00410 * 27 25 23 29 29 H 1.48506 * 109.46582 * 209.99830 * 27 25 23 30 30 H 1.48501 * 109.47326 * 330.00011 * 27 25 23 31 31 H 1.08998 * 109.46890 * 60.00620 * 1 2 3 32 32 H 1.09004 * 109.46485 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47098 * 300.00477 * 1 2 3 34 34 H 1.08993 * 109.46758 * 65.00249 * 4 2 1 35 35 H 1.09000 * 109.47027 * 305.00185 * 4 2 1 36 36 H 1.09003 * 109.47155 * 7.86227 * 7 6 5 37 37 H 1.09000 * 109.47021 * 247.86367 * 7 6 5 38 38 H 1.09001 * 109.46294 * 54.14190 * 9 8 7 39 39 H 1.09003 * 109.45458 * 294.17243 * 9 8 7 40 40 H 1.09005 * 109.50290 * 299.24575 * 10 9 8 41 41 H 1.08998 * 109.50756 * 179.11825 * 10 9 8 42 42 H 1.08998 * 109.52257 * 182.44326 * 11 10 9 43 43 H 1.09007 * 109.51539 * 62.25842 * 11 10 9 44 44 H 1.09002 * 109.50377 * 177.59436 * 12 11 10 45 45 H 1.09003 * 109.50316 * 297.67431 * 12 11 10 46 46 H 1.08001 * 120.79279 * 0.02562 * 16 15 13 47 47 H 1.08006 * 120.41395 * 180.02562 * 17 16 15 48 48 H 1.07997 * 119.61755 * 179.97438 * 18 17 16 49 49 H 1.08001 * 119.61996 * 180.31202 * 20 19 18 50 50 H 1.08997 * 109.47200 * 300.00043 * 22 21 2 51 51 H 1.08996 * 109.47061 * 60.00251 * 22 21 2 52 52 H 0.97000 * 119.99926 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5070 -0.6173 1.3113 6 6 4.6771 -0.5344 1.3608 7 6 6.1441 -0.4305 1.4228 8 7 6.6180 0.4553 0.3511 9 6 6.3652 -0.1347 -0.9696 10 6 6.7365 0.8732 -2.0597 11 6 8.2152 1.2460 -1.9211 12 6 8.4613 1.8131 -0.5203 13 6 8.0398 0.7786 0.5258 14 1 8.6352 -0.1260 0.4023 15 6 8.2618 1.3411 1.9061 16 6 9.3857 0.9860 2.6366 17 6 9.5482 1.5277 3.9023 18 6 8.5917 2.3979 4.3905 19 7 7.5351 2.7132 3.6675 20 6 7.3506 2.2214 2.4578 21 8 2.0064 -0.6737 -1.1667 22 6 2.2001 0.1828 -2.2941 23 6 2.7015 -0.6284 -3.4610 24 1 2.8571 -1.6916 -3.3523 25 6 2.9627 -0.0131 -4.6669 26 7 3.3997 -0.7211 -5.6853 27 14 2.6956 1.8263 -4.8540 28 1 3.9448 2.5465 -4.4990 29 1 2.3301 2.1327 -6.2604 30 1 1.5996 2.2617 -3.9515 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7517 -1.7714 1.2057 35 1 1.6054 -0.2616 2.1370 36 1 6.5841 -1.4199 1.2977 37 1 6.4388 -0.0214 2.3892 38 1 5.3094 -0.3913 -1.0567 39 1 6.9686 -1.0349 -1.0866 40 1 6.1239 1.7684 -1.9516 41 1 6.5634 0.4293 -3.0401 42 1 8.4732 1.9964 -2.6683 43 1 8.8299 0.3579 -2.0678 44 1 9.5206 2.0407 -0.4008 45 1 7.8764 2.7233 -0.3882 46 1 10.1171 0.3037 2.2292 47 1 10.4118 1.2735 4.4991 48 1 8.7107 2.8238 5.3757 49 1 6.4751 2.5067 1.8934 50 1 1.2538 0.6545 -2.5588 51 1 2.9320 0.9512 -2.0450 52 1 3.5838 -0.2881 -6.5336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245238621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:22 Heat of formation + Delta-G solvation = 12.072109 kcal Electronic energy + Delta-G solvation = -30384.236803 eV Core-core repulsion = 26541.795471 eV Total energy + Delta-G solvation = -3842.441332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.57296 -39.77212 -39.25578 -35.94693 -35.10995 -34.46844 -34.13061 -32.83831 -32.33237 -30.26349 -29.87173 -29.16939 -26.94515 -25.06406 -24.54924 -24.13396 -23.86916 -22.38555 -22.29965 -20.65881 -19.07479 -18.09147 -17.93770 -17.70838 -17.46633 -17.03413 -16.49302 -16.19486 -15.86432 -15.78695 -15.70487 -15.18688 -14.99373 -14.85047 -14.69653 -14.47685 -14.32127 -14.16823 -14.06478 -13.89671 -13.73006 -13.60830 -13.40175 -13.23872 -13.03783 -12.75452 -12.63523 -12.62231 -12.31578 -12.03945 -11.82793 -11.72047 -11.59473 -11.45026 -11.32736 -11.00040 -10.86608 -10.69428 -10.62697 -10.35150 -10.26912 -9.81637 -9.41030 -8.37165 -6.43025 0.17823 0.37814 1.29661 1.30849 1.41218 1.58459 1.81501 2.26614 2.81465 2.94531 2.95559 3.08984 3.28553 3.46576 3.73998 3.84669 3.95380 3.99350 4.05280 4.09894 4.13149 4.15306 4.20452 4.25937 4.31941 4.33224 4.33847 4.49023 4.53319 4.55943 4.68702 4.72866 4.74970 4.80208 4.82332 4.87203 4.90701 4.94288 4.96503 4.96867 5.01625 5.08623 5.18354 5.22210 5.27699 5.33013 5.34252 5.41303 5.45758 5.80331 5.91900 5.96777 6.07875 6.59050 6.72663 6.78161 7.08779 7.20824 8.79602 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003569 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.773004 B = 7843.235496 C = 9567.039962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.048 0.952 4 C 0.001 3.999 5 C -0.177 4.177 6 C -0.207 4.207 7 C 0.178 3.822 8 N -0.534 5.534 9 C 0.070 3.930 10 C -0.115 4.115 11 C -0.112 4.112 12 C -0.099 4.099 13 C 0.133 3.867 14 H 0.067 0.933 15 C -0.134 4.134 16 C -0.070 4.070 17 C -0.164 4.164 18 C 0.082 3.918 19 N -0.517 5.517 20 C 0.108 3.892 21 O -0.396 6.396 22 C 0.189 3.811 23 C -0.533 4.533 24 H 0.030 0.970 25 C 0.026 3.974 26 N -0.937 5.937 27 Si 0.938 3.062 28 H -0.260 1.260 29 H -0.271 1.271 30 H -0.251 1.251 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.159 0.841 47 H 0.168 0.832 48 H 0.176 0.824 49 H 0.140 0.860 50 H 0.006 0.994 51 H -0.004 1.004 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.983 6.125 20.023 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.066 0.934 4 C -0.035 4.035 5 C -0.178 4.178 6 C -0.208 4.208 7 C 0.052 3.948 8 N -0.259 5.259 9 C -0.058 4.058 10 C -0.153 4.153 11 C -0.150 4.150 12 C -0.137 4.137 13 C 0.025 3.975 14 H 0.085 0.915 15 C -0.136 4.136 16 C -0.097 4.097 17 C -0.184 4.184 18 C -0.074 4.074 19 N -0.226 5.226 20 C -0.049 4.049 21 O -0.316 6.316 22 C 0.113 3.887 23 C -0.571 4.571 24 H 0.049 0.951 25 C -0.173 4.173 26 N -0.576 5.576 27 Si 0.760 3.240 28 H -0.184 1.184 29 H -0.196 1.196 30 H -0.175 1.175 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.177 0.823 47 H 0.185 0.815 48 H 0.193 0.807 49 H 0.158 0.842 50 H 0.024 0.976 51 H 0.014 0.986 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.198 6.946 20.195 24.594 hybrid contribution 0.491 -0.708 -1.267 1.532 sum 12.689 6.237 18.928 23.626 Atomic orbital electron populations 1.22229 0.93734 1.03267 1.02988 1.22239 0.94936 0.95472 0.85665 0.93362 1.18980 0.83853 1.02986 0.97677 1.22852 0.94643 1.00769 0.99575 1.22476 0.94157 1.01727 1.02417 1.18902 0.84074 0.95825 0.95972 1.61804 1.17924 1.44581 1.01547 1.21864 1.00168 0.95581 0.88156 1.21499 0.97932 0.98732 0.97142 1.21563 0.94408 1.01554 0.97460 1.21595 1.02003 0.97503 0.92552 1.20540 0.87251 0.98061 0.91665 0.91527 1.20728 0.96805 0.99461 0.96622 1.21810 0.96077 0.97840 0.93939 1.22454 1.01452 0.97943 0.96527 1.23296 0.89242 0.94816 1.00096 1.67735 1.23078 1.24764 1.07060 1.22552 0.98295 0.92897 0.91157 1.87910 1.86569 1.36560 1.20579 1.20212 0.93932 0.90169 0.84390 1.21014 1.45064 0.95545 0.95439 0.95112 1.25594 0.93760 1.03348 0.94577 1.70009 1.46082 1.38352 1.03158 0.85867 0.80233 0.79433 0.78508 1.18425 1.19610 1.17525 0.93467 0.91497 0.88489 0.88635 0.85114 0.92217 0.88109 0.93397 0.94437 0.92953 0.93188 0.90726 0.91008 0.88886 0.92050 0.82344 0.81467 0.80697 0.84233 0.97599 0.98590 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.53 71.98 0.69 -3.97 16 2 C 0.07 2.64 2.69 30.60 0.08 2.72 16 3 H 0.05 1.74 7.78 -2.39 -0.02 1.73 16 4 C 0.00 0.03 5.42 28.79 0.16 0.19 16 5 C -0.18 -6.25 13.10 31.12 0.41 -5.84 16 6 C -0.21 -7.20 12.36 31.13 0.38 -6.82 16 7 C 0.18 5.04 5.06 84.50 0.43 5.47 16 8 N -0.53 -15.28 3.85 -886.56 -3.42 -18.69 16 9 C 0.07 2.42 5.30 86.33 0.46 2.88 16 10 C -0.11 -3.87 6.09 30.65 0.19 -3.68 16 11 C -0.11 -2.70 6.00 30.67 0.18 -2.52 16 12 C -0.10 -2.05 5.35 30.64 0.16 -1.88 16 13 C 0.13 2.85 2.06 44.19 0.09 2.94 16 14 H 0.07 1.27 8.03 -2.39 -0.02 1.25 16 15 C -0.13 -2.63 3.60 -19.77 -0.07 -2.70 16 16 C -0.07 -0.99 9.82 22.47 0.22 -0.77 16 17 C -0.16 -2.02 10.11 22.36 0.23 -1.79 16 18 C 0.08 1.35 11.18 84.69 0.95 2.30 16 19 N -0.52 -12.30 10.36 -195.84 -2.03 -14.33 16 20 C 0.11 2.60 9.25 84.67 0.78 3.38 16 21 O -0.40 -19.02 9.71 -148.98 -1.45 -20.46 16 22 C 0.19 9.85 4.57 71.24 0.33 10.18 16 23 C -0.53 -32.76 9.99 25.60 0.26 -32.50 16 24 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 25 C 0.03 1.53 5.47 84.66 0.46 2.00 16 26 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 27 Si 0.94 44.35 27.47 68.60 1.88 46.24 16 28 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 30 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 31 H 0.05 1.45 7.87 -2.39 -0.02 1.43 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 37 H 0.10 2.59 5.77 -2.39 -0.01 2.58 16 38 H 0.05 2.11 7.12 -2.39 -0.02 2.09 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 48 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 49 H 0.14 3.90 7.74 -2.91 -0.02 3.88 16 50 H 0.01 0.32 6.93 -2.39 -0.02 0.30 16 51 H 0.00 -0.18 7.51 -2.39 -0.02 -0.20 16 52 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.79 420.03 2.49 -73.29 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.82 Total: 22.81 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 6.38 Total: -30.42 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -5.15 Total: -91.46 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.45 Total: -20.46 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Total: -75.79 2.49 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245238621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.364 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds