Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48501 * 109.47242 * 275.29964 * 3 2 1 5 5 H 1.48504 * 109.47618 * 35.30158 * 3 2 1 6 6 H 1.48505 * 109.46965 * 155.29881 * 3 2 1 7 7 C 1.39900 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00346 * 346.79026 * 7 2 1 9 9 C 1.41156 * 120.00014 * 166.78272 * 7 2 1 10 10 C 1.40869 * 120.16255 * 151.24765 * 9 7 2 11 11 C 1.36375 * 119.82340 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.17368 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83763 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00546 * 146.54071 * 13 12 11 15 15 O 1.21280 * 119.99533 * 355.12303 * 14 13 12 16 16 C 1.50699 * 120.00100 * 175.12025 * 14 13 12 17 17 N 1.46899 * 109.46937 * 179.97438 * 16 14 13 18 18 C 1.46826 * 111.00046 * 294.33528 * 17 16 14 19 19 C 1.53071 * 109.59714 * 174.32626 * 18 17 16 20 20 C 1.53043 * 109.20799 * 58.89781 * 19 18 17 21 21 H 1.09007 * 109.42184 * 61.84454 * 20 19 18 22 22 C 1.52882 * 109.72842 * 181.72371 * 20 19 18 23 23 C 1.52984 * 109.60555 * 60.46171 * 22 20 19 24 24 C 1.53034 * 109.37203 * 59.91961 * 23 22 20 25 25 C 1.52950 * 109.40980 * 299.73882 * 24 23 22 26 26 C 1.53036 * 109.60248 * 60.22913 * 25 24 23 27 27 H 1.09005 * 109.60510 * 61.12893 * 26 25 24 28 28 C 1.46866 * 111.00025 * 170.00014 * 17 16 14 29 29 C 1.39486 * 120.33089 * 0.27193 * 12 11 10 30 30 C 1.36374 * 120.16596 * 359.44731 * 29 12 11 31 31 H 0.96991 * 120.00027 * 359.97438 * 1 2 3 32 32 H 1.07992 * 120.08794 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91316 * 180.02562 * 11 10 9 34 34 H 0.97005 * 119.99496 * 326.53336 * 13 12 11 35 35 H 1.09007 * 109.46684 * 60.00338 * 16 14 13 36 36 H 1.08996 * 109.47496 * 300.00253 * 16 14 13 37 37 H 1.09002 * 109.44681 * 294.35592 * 18 17 16 38 38 H 1.08996 * 109.45693 * 54.28494 * 18 17 16 39 39 H 1.09000 * 109.51719 * 178.82299 * 19 18 17 40 40 H 1.09004 * 109.51237 * 298.97659 * 19 18 17 41 41 H 1.09001 * 109.48122 * 300.40129 * 22 20 19 42 42 H 1.09007 * 109.43433 * 180.48736 * 22 20 19 43 43 H 1.09003 * 109.48678 * 299.94742 * 23 22 20 44 44 H 1.08994 * 109.49279 * 179.90132 * 23 22 20 45 45 H 1.08993 * 109.47678 * 59.72273 * 24 23 22 46 46 H 1.09000 * 109.47620 * 179.74421 * 24 23 22 47 47 H 1.09005 * 109.44746 * 180.26988 * 25 24 23 48 48 H 1.09004 * 109.45102 * 300.18926 * 25 24 23 49 49 H 1.09002 * 109.48322 * 66.06634 * 28 17 16 50 50 H 1.08999 * 109.50569 * 306.01125 * 28 17 16 51 51 H 1.07999 * 119.91660 * 179.72778 * 29 12 11 52 52 H 1.07999 * 120.08277 * 180.27706 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3782 2.1111 -1.3941 5 1 1.5007 2.6178 0.8091 6 1 3.5918 1.4105 0.5851 7 6 2.0083 -1.2115 0.0005 8 1 1.4898 -2.1345 0.2147 9 6 3.3918 -1.2278 -0.2790 10 6 4.2139 -2.2294 0.2738 11 6 5.5496 -2.2389 -0.0013 12 6 6.1021 -1.2606 -0.8278 13 7 7.4666 -1.2772 -1.1044 14 6 7.9158 -0.8638 -2.3060 15 8 7.1276 -0.5612 -3.1766 16 6 9.3974 -0.7774 -2.5675 17 7 9.6256 -0.3051 -3.9397 18 6 9.1464 -1.2869 -4.9206 19 6 9.2693 -0.7053 -6.3312 20 6 10.7325 -0.3486 -6.6031 21 1 11.3408 -1.2519 -6.5548 22 6 10.8623 0.2734 -7.9936 23 6 10.0197 1.5482 -8.0664 24 6 10.5125 2.5432 -7.0132 25 6 10.3724 1.9222 -5.6225 26 6 11.2130 0.6458 -5.5431 27 1 12.2628 0.8884 -5.7077 28 6 11.0418 0.0178 -4.1564 29 6 5.2953 -0.2627 -1.3746 30 6 3.9570 -0.2435 -1.1133 31 1 -0.4850 0.8400 0.0004 32 1 3.7875 -2.9877 0.9136 33 1 6.1811 -3.0063 0.4214 34 1 8.0939 -1.5863 -0.4322 35 1 9.8463 -1.7630 -2.4435 36 1 9.8508 -0.0803 -1.8628 37 1 9.7462 -2.1942 -4.8487 38 1 8.1027 -1.5250 -4.7158 39 1 8.9328 -1.4429 -7.0598 40 1 8.6551 0.1918 -6.4099 41 1 10.5123 -0.4363 -8.7433 42 1 11.9072 0.5175 -8.1856 43 1 8.9745 1.3047 -7.8757 44 1 10.1150 1.9910 -9.0578 45 1 11.5592 2.7823 -7.2008 46 1 9.9162 3.4540 -7.0666 47 1 10.7188 2.6322 -4.8714 48 1 9.3260 1.6798 -5.4369 49 1 11.6363 -0.8937 -4.0941 50 1 11.3753 0.7223 -3.3944 51 1 5.7309 0.4940 -2.0102 52 1 3.3329 0.5272 -1.5410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247702097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -24.159087 kcal Electronic energy + Delta-G solvation = -30187.006119 eV Core-core repulsion = 26342.993685 eV Total energy + Delta-G solvation = -3844.012434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.60270 -39.58660 -37.65628 -36.23379 -34.43994 -33.10593 -32.52616 -31.77146 -29.98006 -29.80663 -29.38726 -27.35559 -24.81407 -23.87116 -22.83980 -22.35489 -21.86219 -21.13547 -20.88517 -19.54707 -18.16102 -17.55045 -17.15620 -16.61997 -15.86256 -15.77629 -15.40274 -15.21127 -14.87570 -14.49987 -14.11897 -13.99998 -13.84802 -13.64396 -13.31944 -13.22411 -13.02951 -12.72069 -12.54057 -12.53128 -12.28072 -12.16215 -12.10580 -11.98101 -11.73498 -11.38986 -11.18566 -11.10575 -11.09448 -10.79778 -10.69032 -10.27178 -10.22817 -10.12069 -10.08095 -10.00945 -9.63264 -9.56353 -9.16949 -8.86665 -8.31241 -7.76413 -7.15371 -6.92803 -4.42528 2.38862 2.72078 3.06269 3.18863 3.27357 3.34652 3.38143 4.00457 4.00837 4.42711 4.49007 4.51376 4.53204 4.88671 4.99383 5.02467 5.05165 5.09144 5.13422 5.20986 5.26072 5.31079 5.39543 5.41960 5.44769 5.48046 5.54088 5.61615 5.67951 5.76253 5.82262 5.86305 5.91512 5.99080 6.06482 6.11063 6.15611 6.19085 6.21601 6.30261 6.43402 6.53870 6.68497 6.77713 6.88713 6.91726 7.03369 7.17091 7.31807 7.51252 7.64874 7.87736 8.07070 8.13214 8.34582 8.59860 8.76094 8.82560 10.09113 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.002470 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.751440 B =11333.800877 C =12159.659443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.086 3.914 10 C -0.198 4.198 11 C -0.095 4.095 12 C -0.004 4.004 13 N -0.656 5.656 14 C 0.498 3.502 15 O -0.511 6.511 16 C 0.039 3.961 17 N -0.515 5.515 18 C 0.050 3.950 19 C -0.111 4.111 20 C -0.084 4.084 21 H 0.062 0.938 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.075 4.075 27 H 0.070 0.930 28 C 0.060 3.940 29 C -0.061 4.061 30 C -0.227 4.227 31 H 0.285 0.715 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.395 0.605 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.023 0.977 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.031 0.969 50 H 0.074 0.926 51 H 0.108 0.892 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.824 1.412 -9.672 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.218 4.218 11 C -0.116 4.116 12 C -0.096 4.096 13 N -0.300 5.300 14 C 0.284 3.716 15 O -0.385 6.385 16 C -0.092 4.092 17 N -0.240 5.240 18 C -0.077 4.077 19 C -0.149 4.149 20 C -0.103 4.103 21 H 0.080 0.920 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.094 4.094 27 H 0.088 0.912 28 C -0.068 4.068 29 C -0.081 4.081 30 C -0.246 4.246 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.126 0.874 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 22.723 2.163 -10.371 25.071 hybrid contribution 1.051 -0.239 0.496 1.187 sum 23.774 1.924 -9.875 25.815 Atomic orbital electron populations 1.69681 1.08016 1.30266 1.35581 1.26203 0.94847 1.01847 0.90917 0.86270 0.81165 0.79483 0.78805 1.19737 1.22195 1.16431 1.19494 0.91652 0.95619 1.39984 0.89138 1.17790 0.93388 0.91258 0.89297 1.20553 0.92363 1.03237 1.05679 1.20148 0.95425 0.96162 0.99822 1.17067 0.82202 1.00714 1.09651 1.42984 1.07084 1.65034 1.14899 1.20422 0.90420 0.78536 0.82189 1.90675 1.57022 1.47146 1.43702 1.21919 0.94349 1.00550 0.92423 1.61494 1.17509 1.43903 1.01068 1.22288 1.02189 0.91547 0.91664 1.21683 0.96082 1.01730 0.95375 1.21145 0.97017 0.97601 0.94506 0.91989 1.21490 0.99847 0.97098 0.96444 1.21576 1.00323 0.95592 0.98459 1.21537 1.00639 0.98071 0.95416 1.21536 1.02226 0.95305 0.95744 1.21182 0.99135 0.95664 0.93383 0.91177 1.22184 0.87832 0.98974 0.97805 1.20310 0.93556 0.96046 0.98147 1.20614 0.94720 1.03792 1.05512 0.90424 0.87829 0.88615 0.77198 0.92461 0.88170 0.95927 0.88415 0.91898 0.90131 0.92205 0.92350 0.91421 0.92543 0.92663 0.92273 0.92610 0.89739 0.95115 0.90772 0.87425 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 13.93 55.55 0.77 -21.14 16 2 C 0.08 2.14 5.47 -17.34 -0.09 2.05 16 3 Si 0.92 21.41 24.36 -169.99 -4.14 17.27 16 4 H -0.27 -6.28 6.77 56.52 0.38 -5.89 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.73 6.49 56.52 0.37 -5.36 16 7 C -0.44 -11.98 9.60 -37.85 -0.36 -12.34 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.09 2.21 5.19 -106.80 -0.55 1.65 16 10 C -0.20 -4.55 9.74 -39.26 -0.38 -4.93 16 11 C -0.10 -1.94 9.89 -39.79 -0.39 -2.33 16 12 C 0.00 -0.08 6.29 -83.57 -0.53 -0.61 16 13 N -0.66 -10.44 5.31 -9.74 -0.05 -10.49 16 14 C 0.50 7.94 7.23 -10.99 -0.08 7.86 16 15 O -0.51 -10.27 11.98 5.56 0.07 -10.20 16 16 C 0.04 0.44 5.45 -4.98 -0.03 0.41 16 17 N -0.51 -6.05 3.59 -236.00 -0.85 -6.89 16 18 C 0.05 0.62 5.11 -3.83 -0.02 0.60 16 19 C -0.11 -1.20 4.74 -26.67 -0.13 -1.32 16 20 C -0.08 -0.75 2.47 -90.62 -0.22 -0.97 16 21 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 22 C -0.11 -0.89 5.45 -26.80 -0.15 -1.03 16 23 C -0.12 -1.03 5.66 -26.72 -0.15 -1.18 16 24 C -0.12 -1.02 5.92 -26.74 -0.16 -1.18 16 25 C -0.11 -1.07 4.77 -26.74 -0.13 -1.20 16 26 C -0.07 -0.66 2.56 -90.47 -0.23 -0.89 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 C 0.06 0.55 4.90 -3.75 -0.02 0.53 16 29 C -0.06 -1.42 8.57 -39.79 -0.34 -1.76 16 30 C -0.23 -5.71 6.86 -39.26 -0.27 -5.98 16 31 H 0.29 7.00 8.30 -40.82 -0.34 6.66 16 32 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 33 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.39 4.70 8.81 -40.82 -0.36 4.35 16 35 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 36 H 0.10 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 1.51 5.77 -51.93 -0.30 1.21 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.99 4.88 -51.93 -0.25 0.73 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 1.04 5.92 -51.93 -0.31 0.73 16 49 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 51 H 0.11 2.52 6.40 -52.49 -0.34 2.18 16 52 H 0.10 2.53 4.22 -52.49 -0.22 2.31 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -29.80 383.99 -11.12 -40.92 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.47 Total: 7.38 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -4.23 Total: -22.63 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.13 Total: -38.53 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.80 -11.12 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247702097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.756 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds