Wall clock time and date at job start Tue Mar 31 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35807 * 126.95561 * 2 1 4 4 C 1.46980 * 125.12963 * 359.97438 * 3 2 1 5 5 O 1.21655 * 119.99959 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99916 * 179.97438 * 4 3 2 7 7 C 1.46501 * 120.00062 * 179.97438 * 6 4 3 8 8 H 1.09005 * 110.53605 * 327.61025 * 7 6 4 9 9 C 1.54272 * 110.48530 * 90.22209 * 7 6 4 10 10 C 1.53876 * 106.59726 * 142.29167 * 9 7 6 11 11 C 1.54268 * 106.59848 * 359.97438 * 10 9 7 12 12 H 1.09006 * 110.59775 * 95.12385 * 11 10 9 13 13 C 1.50696 * 110.48507 * 217.71136 * 11 10 9 14 14 H 1.08006 * 119.99682 * 114.78316 * 13 11 10 15 15 C 1.37875 * 120.00460 * 294.77371 * 13 11 10 16 16 N 1.31520 * 119.99712 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00305 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47224 * 90.00349 * 17 15 13 19 19 H 1.48504 * 109.47352 * 210.00389 * 17 15 13 20 20 H 1.48502 * 109.47084 * 330.00566 * 17 15 13 21 21 C 1.54883 * 110.48868 * 204.99766 * 7 6 4 22 22 O 1.34946 * 109.74455 * 180.24360 * 3 2 1 23 23 C 1.34719 * 110.86387 * 359.58733 * 22 3 2 24 24 C 1.40774 * 107.59056 * 0.40614 * 23 22 3 25 25 C 1.39658 * 120.08805 * 179.73842 * 24 23 22 26 26 C 1.50693 * 120.14719 * 179.97438 * 25 24 23 27 27 C 1.36666 * 119.70636 * 359.97438 * 25 24 23 28 28 C 1.38783 * 120.44980 * 0.02562 * 27 25 24 29 29 C 1.37840 * 120.74392 * 0.02562 * 28 27 25 30 30 C 1.50701 * 120.07704 * 179.97438 * 29 28 27 31 31 H 1.08999 * 109.47044 * 95.02469 * 1 2 3 32 32 H 1.09000 * 109.46723 * 215.02314 * 1 2 3 33 33 H 1.09001 * 109.47047 * 335.02201 * 1 2 3 34 34 H 0.97001 * 120.00177 * 359.97438 * 6 4 3 35 35 H 1.08999 * 110.03221 * 23.00627 * 9 7 6 36 36 H 1.09002 * 110.03081 * 261.57636 * 9 7 6 37 37 H 1.08996 * 110.02617 * 240.71504 * 10 9 7 38 38 H 1.08999 * 110.03282 * 119.28347 * 10 9 7 39 39 H 0.96999 * 119.99820 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.75730 * 85.06562 * 21 7 6 41 41 H 1.09009 * 110.75416 * 321.69424 * 21 7 6 42 42 H 1.09003 * 109.46817 * 84.41189 * 26 25 24 43 43 H 1.09001 * 109.46985 * 204.40594 * 26 25 24 44 44 H 1.09001 * 109.47257 * 324.41124 * 26 25 24 45 45 H 1.07997 * 119.77413 * 179.97438 * 27 25 24 46 46 H 1.08003 * 119.63631 * 179.97438 * 28 27 25 47 47 H 1.09003 * 109.47186 * 89.99926 * 30 29 28 48 48 H 1.09001 * 109.47106 * 209.99389 * 30 29 28 49 49 H 1.08998 * 109.47171 * 329.99374 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3235 1.0852 0.0000 4 6 1.8714 2.4838 -0.0005 5 8 0.6818 2.7385 -0.0015 6 7 2.7747 3.4840 0.0000 7 6 2.3241 4.8780 -0.0011 8 1 1.3869 4.9765 -0.5490 9 6 2.1618 5.3941 1.4437 10 6 2.6366 6.8577 1.4435 11 6 3.0715 7.1798 -0.0011 12 1 2.2566 7.6510 -0.5508 13 6 4.2884 8.0686 0.0002 14 1 5.2251 7.7022 -0.3935 15 6 4.2063 9.3494 0.5039 16 7 3.0658 9.7954 0.9836 17 14 5.7150 10.4508 0.5062 18 1 5.7684 11.2198 -0.7630 19 1 5.6391 11.3919 1.6524 20 1 6.9369 9.6162 0.6310 21 6 3.4093 5.7980 -0.6134 22 8 3.6126 0.6859 -0.0054 23 6 3.6984 -0.6585 -0.0001 24 6 2.3864 -1.1686 -0.0001 25 6 2.1717 -2.5486 -0.0006 26 6 0.7677 -3.0961 -0.0001 27 6 3.2405 -3.4003 -0.0016 28 6 4.5361 -2.9029 -0.0015 29 6 4.7694 -1.5444 0.0000 30 6 6.1825 -1.0207 0.0006 31 1 -0.3633 -0.0900 -1.0237 32 1 -0.3633 -0.8416 0.5898 33 1 -0.3633 0.9316 0.4340 34 1 3.7233 3.2809 0.0012 35 1 2.7758 4.8024 2.1227 36 1 1.1152 5.3410 1.7437 37 1 3.4809 6.9763 2.1225 38 1 1.8204 7.5150 1.7435 39 1 3.0080 10.6964 1.3383 40 1 3.3244 5.8255 -1.6997 41 1 4.4054 5.4749 -0.3107 42 1 0.3923 -3.1344 -1.0227 43 1 0.7695 -4.1002 0.4241 44 1 0.1259 -2.4498 0.5986 45 1 3.0757 -4.4676 -0.0016 46 1 5.3711 -3.5879 -0.0019 47 1 6.5232 -0.8933 -1.0269 48 1 6.2139 -0.0605 0.5155 49 1 6.8324 -1.7295 0.5137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295615325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:41 Heat of formation + Delta-G solvation = -36.225728 kcal Electronic energy + Delta-G solvation = -29173.288073 eV Core-core repulsion = 25258.345206 eV Total energy + Delta-G solvation = -3914.942866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.75067 -39.63400 -38.50321 -37.15937 -35.03693 -33.85990 -32.74793 -32.05947 -30.26355 -29.74691 -28.25629 -27.97729 -26.75366 -25.18266 -24.14358 -23.27665 -22.82072 -20.76280 -19.99676 -19.43544 -19.05265 -18.09534 -17.21387 -16.64358 -16.57428 -15.72189 -15.62468 -15.17538 -14.82961 -14.52203 -14.36159 -14.22837 -14.01133 -13.81965 -13.59728 -13.38685 -13.14111 -12.93552 -12.87078 -12.60185 -12.52674 -12.44716 -12.06464 -11.83445 -11.73377 -11.61911 -11.27234 -11.13665 -11.03214 -10.90550 -10.59770 -10.34133 -10.04310 -9.92285 -9.85779 -9.59727 -9.27196 -8.90700 -8.76413 -8.69850 -8.39362 -8.15361 -6.01996 -4.05093 0.36297 1.06061 1.64189 2.33521 3.15990 3.25851 3.29988 3.32335 3.37109 3.39721 4.19325 4.27875 4.43317 4.48565 4.61217 4.73007 4.85932 4.88948 5.05126 5.17871 5.26242 5.27541 5.29402 5.35296 5.37354 5.48410 5.54259 5.59755 5.61923 5.68958 5.78795 5.80491 5.88523 5.92546 6.10003 6.17558 6.21797 6.27332 6.30600 6.35051 6.49452 6.62353 6.67618 6.80031 6.86364 6.89502 7.23103 7.29013 7.63755 7.68959 7.86059 7.99926 8.18877 8.42691 8.97600 9.59058 11.07841 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002305 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.956842 B =12146.617281 C =13376.227189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.083 4.083 3 C -0.030 4.030 4 C 0.595 3.405 5 O -0.517 6.517 6 N -0.702 5.702 7 C 0.133 3.867 8 H 0.091 0.909 9 C -0.135 4.135 10 C -0.097 4.097 11 C 0.052 3.948 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.120 4.120 22 O -0.180 6.180 23 C 0.075 3.925 24 C -0.136 4.136 25 C -0.031 4.031 26 C -0.122 4.122 27 C -0.141 4.141 28 C -0.085 4.085 29 C -0.082 4.082 30 C -0.113 4.113 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.403 0.597 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -27.809 -1.559 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 C -0.080 4.080 4 C 0.380 3.620 5 O -0.396 6.396 6 N -0.351 5.351 7 C 0.030 3.970 8 H 0.109 0.891 9 C -0.173 4.173 10 C -0.135 4.135 11 C 0.033 3.967 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.158 4.158 22 O -0.082 6.082 23 C 0.027 3.973 24 C -0.137 4.137 25 C -0.031 4.031 26 C -0.178 4.178 27 C -0.159 4.159 28 C -0.103 4.103 29 C -0.083 4.083 30 C -0.170 4.170 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.238 0.762 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.963 -27.223 -1.470 27.279 hybrid contribution 1.336 0.461 0.104 1.417 sum 0.373 -26.761 -1.366 26.799 Atomic orbital electron populations 1.20624 0.87594 1.04434 1.02846 1.21332 0.96958 0.89342 1.01017 1.21957 0.80936 0.95103 1.10018 1.16676 0.86145 0.81602 0.77619 1.90823 1.15302 1.82263 1.51194 1.46203 1.09636 1.06759 1.72478 1.22243 0.99460 0.77325 0.97943 0.89094 1.22642 1.00387 0.99308 0.94990 1.22096 1.00051 0.90746 1.00627 1.19399 0.96701 0.89277 0.91347 0.94755 1.21109 0.95871 0.97695 1.40600 0.92619 1.24985 0.95795 0.97912 0.95282 1.69970 1.24454 1.17364 1.40853 0.86639 0.83443 0.80609 0.77555 1.20724 1.21296 1.19965 1.22887 0.96495 0.97469 0.98990 1.84018 1.27148 1.20722 1.76299 1.19496 0.94972 0.81094 1.01746 1.19623 0.92312 0.93717 1.08073 1.19115 0.96485 0.90280 0.97243 1.20961 0.92718 1.01240 1.02891 1.20638 0.91741 0.99681 1.03805 1.20847 0.97381 0.93075 0.99035 1.18827 0.93422 0.91216 1.04801 1.20750 0.91539 1.01890 1.02822 0.90583 0.91073 0.88611 0.76178 0.92936 0.92792 0.92840 0.92464 0.93031 0.92655 0.91932 0.90671 0.91230 0.90633 0.85243 0.84688 0.90848 0.91103 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.38 36.01 0.34 -0.77 16 2 C -0.08 -1.10 6.39 -102.28 -0.65 -1.76 16 3 C -0.03 -0.44 7.07 -36.91 -0.26 -0.71 16 4 C 0.59 9.63 7.79 -12.72 -0.10 9.53 16 5 O -0.52 -9.43 14.17 5.23 0.07 -9.36 16 6 N -0.70 -11.07 5.09 -53.41 -0.27 -11.34 16 7 C 0.13 2.41 3.22 -66.27 -0.21 2.20 16 8 H 0.09 1.73 7.56 -51.93 -0.39 1.34 16 9 C -0.13 -2.58 6.54 -25.61 -0.17 -2.75 16 10 C -0.10 -2.21 5.60 -25.61 -0.14 -2.36 16 11 C 0.05 1.25 2.72 -90.13 -0.25 1.00 16 12 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.51 -13.76 8.36 -34.44 -0.29 -14.05 16 14 H 0.06 1.46 7.77 -52.48 -0.41 1.06 16 15 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 16 N -0.89 -25.33 12.63 55.43 0.70 -24.63 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.12 -2.36 5.90 -24.75 -0.15 -2.51 16 22 O -0.18 -2.51 10.28 2.76 0.03 -2.48 16 23 C 0.08 0.96 7.07 -38.35 -0.27 0.69 16 24 C -0.14 -1.67 6.15 -105.19 -0.65 -2.32 16 25 C -0.03 -0.30 5.88 -104.66 -0.62 -0.92 16 26 C -0.12 -0.86 9.59 36.00 0.35 -0.52 16 27 C -0.14 -1.14 9.60 -39.95 -0.38 -1.53 16 28 C -0.09 -0.69 9.67 -39.53 -0.38 -1.08 16 29 C -0.08 -0.83 5.89 -104.49 -0.62 -1.45 16 30 C -0.11 -0.92 10.02 36.01 0.36 -0.55 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.63 5.65 -51.93 -0.29 0.34 16 33 H 0.10 1.25 6.11 -51.93 -0.32 0.93 16 34 H 0.40 5.65 8.28 -40.82 -0.34 5.31 16 35 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 38 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.19 7.93 -51.92 -0.41 0.78 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.37 8.04 -51.93 -0.42 -0.05 16 44 H 0.08 0.54 5.44 -51.93 -0.28 0.26 16 45 H 0.13 0.71 8.05 -52.49 -0.42 0.28 16 46 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 49 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -30.32 395.35 -10.18 -40.50 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.46 Total: 3.55 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -4.18 Total: -18.24 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.43 Total: -35.97 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.32 -10.18 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295615325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.274 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds