Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47080 * 283.27064 * 3 2 1 5 5 C 1.36940 * 120.00278 * 275.00329 * 4 3 2 6 6 H 1.08000 * 119.99899 * 187.00198 * 5 4 3 7 7 C 1.38810 * 119.99586 * 6.99478 * 5 4 3 8 8 N 1.31616 * 120.00116 * 24.75921 * 7 5 4 9 9 Si 1.86795 * 119.99769 * 204.75202 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00789 * 9 7 5 11 11 H 1.48499 * 109.47098 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47503 * 300.00386 * 9 7 5 13 13 S 1.65599 * 119.99949 * 95.00066 * 4 3 2 14 14 O 1.42100 * 106.40389 * 150.33487 * 13 4 3 15 15 O 1.42100 * 106.40118 * 17.41854 * 13 4 3 16 16 C 1.76204 * 107.21854 * 263.87649 * 13 4 3 17 17 C 1.38241 * 119.99074 * 270.24880 * 16 13 4 18 18 C 1.38213 * 120.01158 * 180.29724 * 17 16 13 19 19 C 1.38323 * 119.98741 * 359.47687 * 18 17 16 20 20 Br 1.89108 * 120.01103 * 180.27611 * 19 18 17 21 21 C 1.38332 * 119.98305 * 0.24913 * 19 18 17 22 22 C 1.38219 * 119.98441 * 0.02562 * 21 19 18 23 23 H 4.40642 * 5.51477 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.46987 * 163.27360 * 3 2 1 25 25 H 1.09003 * 109.47070 * 43.27220 * 3 2 1 26 26 H 0.97002 * 120.00279 * 179.97438 * 8 7 5 27 27 H 1.08003 * 119.99181 * 0.02666 * 17 16 13 28 28 H 1.07996 * 120.00964 * 179.75006 * 18 17 16 29 29 H 1.07996 * 120.00923 * 180.02562 * 21 19 18 30 30 H 1.08001 * 119.99402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3162 1.3443 5 6 3.2648 0.6776 2.2774 6 1 3.7296 0.4670 3.2292 7 6 2.7994 1.9556 1.9998 8 7 1.8390 2.1288 1.1166 9 14 3.5362 3.4294 2.8797 10 1 4.9899 3.5054 2.5861 11 1 2.8703 4.6705 2.4092 12 1 3.3338 3.2841 4.3436 13 16 3.5290 -1.8762 1.7356 14 8 4.5513 -1.7968 2.7194 15 8 3.6860 -2.5708 0.5059 16 6 2.1261 -2.5849 2.5319 17 6 1.9878 -2.4876 3.9040 18 6 0.8907 -3.0488 4.5298 19 6 -0.0746 -3.6984 3.7818 20 35 -1.5800 -4.4596 4.6364 21 6 0.0612 -3.7907 2.4082 22 6 1.1617 -3.2341 1.7840 23 1 -1.0500 0.0002 0.0002 24 1 3.0089 0.9850 -0.2958 25 1 3.0097 -0.7474 -0.7044 26 1 1.5136 3.0218 0.9229 27 1 2.7396 -1.9768 4.4875 28 1 0.7848 -2.9762 5.6021 29 1 -0.6924 -4.2974 1.8237 30 1 1.2681 -3.3064 0.7116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304151110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = 30.551188 kcal Electronic energy + Delta-G solvation = -19838.709055 eV Core-core repulsion = 16581.910331 eV Total energy + Delta-G solvation = -3256.798723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 342.966 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.71256 -36.44585 -35.96749 -34.54533 -32.20425 -32.09651 -31.24383 -30.76084 -29.05538 -26.68451 -23.96809 -22.52990 -22.25015 -18.67229 -18.19463 -17.47039 -16.72199 -16.45427 -15.26700 -15.25139 -14.72810 -14.31468 -14.21487 -13.45021 -13.37510 -13.22398 -13.08209 -12.49828 -11.95590 -11.79972 -11.38185 -11.12909 -11.05795 -10.90335 -10.84138 -10.83072 -10.59819 -10.40087 -10.24473 -10.01809 -9.68051 -9.28704 -8.94170 -8.73938 -8.62983 -8.42060 -6.70293 -4.08103 1.04332 1.56572 1.60518 1.69686 3.02219 3.07756 3.14455 3.61779 3.83848 3.92138 4.13106 4.49135 4.58846 4.94942 4.98440 5.10812 5.40271 5.53625 5.64323 5.86394 5.89492 6.18884 6.24790 6.26718 6.37500 6.62625 6.66259 6.89898 7.04992 7.09892 7.14879 8.02252 8.42835 8.84509 8.88018 10.18231 Molecular weight = 342.97amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.004313 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.406195 B = 6490.741911 C = 6824.922107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.110 4.110 3 C 0.234 3.766 4 N -0.790 5.790 5 C -0.238 4.238 6 H 0.123 0.877 7 C 0.029 3.971 8 N -0.810 5.810 9 Si 0.933 3.067 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.518 3.482 14 O -0.979 6.979 15 O -0.998 6.998 16 C -0.639 4.639 17 C -0.022 4.022 18 C -0.119 4.119 19 C -0.061 4.061 20 Br -0.065 7.065 21 C -0.118 4.118 22 C -0.022 4.022 23 H 0.195 0.805 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.279 0.721 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -5.445 3.283 8.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.611 5.611 5 C -0.387 4.387 6 H 0.140 0.860 7 C -0.185 4.185 8 N -0.448 5.448 9 Si 0.757 3.243 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.192 1.192 13 S 2.616 3.384 14 O -0.969 6.969 15 O -0.987 6.987 16 C -0.716 4.716 17 C -0.041 4.041 18 C -0.139 4.139 19 C -0.140 4.140 20 Br 0.020 6.980 21 C -0.138 4.138 22 C -0.042 4.042 23 H 0.212 0.788 24 H 0.132 0.868 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.871 -6.368 3.338 9.283 hybrid contribution -0.887 0.820 0.666 1.379 sum -6.758 -5.549 4.004 9.618 Atomic orbital electron populations 1.24171 0.95264 1.06438 1.02608 1.23277 0.94462 0.95496 0.98044 1.18509 0.84102 1.02660 0.83841 1.55569 1.71582 1.19194 1.14736 1.20130 1.30269 0.86650 1.01648 0.85965 1.25668 0.94889 1.00205 0.97717 1.70217 1.20112 1.24297 1.30205 0.85866 0.79798 0.78932 0.79654 1.18981 1.20526 1.19227 1.12412 0.78751 0.74152 0.73075 1.93366 1.56448 1.86318 1.60744 1.93336 1.87412 1.74041 1.43961 1.32758 1.24466 1.09534 1.04821 1.20903 0.95849 0.94092 0.93301 1.21176 0.94101 0.98764 0.99865 1.21842 0.94266 1.02611 0.95285 1.96641 1.38785 1.82661 1.79906 1.21143 0.98959 1.01238 0.92503 1.20850 0.91212 0.92211 0.99963 0.78772 0.86823 0.89789 0.90983 0.84120 0.85157 0.85236 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.34 19.21 29.55 0.57 -4.77 16 2 C -0.11 -2.36 11.06 -37.12 -0.41 -2.77 16 3 C 0.23 4.98 5.45 -6.83 -0.04 4.94 16 4 N -0.79 -17.77 2.89 -62.78 -0.18 -17.95 16 5 C -0.24 -5.45 9.46 -15.06 -0.14 -5.59 16 6 H 0.12 2.74 7.36 -52.49 -0.39 2.35 16 7 C 0.03 0.64 4.94 -17.43 -0.09 0.55 16 8 N -0.81 -18.30 8.81 55.49 0.49 -17.81 16 9 Si 0.93 17.45 29.62 -169.99 -5.03 12.41 16 10 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 13 S 2.52 56.31 5.64 -107.50 -0.61 55.70 16 14 O -0.98 -23.69 16.24 -57.17 -0.93 -24.62 16 15 O -1.00 -23.41 15.73 -57.17 -0.90 -24.31 16 16 C -0.64 -13.03 5.97 -39.58 -0.24 -13.26 16 17 C -0.02 -0.41 9.52 -39.59 -0.38 -0.78 16 18 C -0.12 -1.98 9.79 -39.56 -0.39 -2.36 16 19 C -0.06 -0.98 6.22 -39.52 -0.25 -1.23 16 20 Br -0.07 -0.88 33.70 -68.01 -2.29 -3.17 16 21 C -0.12 -1.96 9.79 -39.55 -0.39 -2.35 16 22 C -0.02 -0.42 9.52 -39.59 -0.38 -0.80 16 23 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 24 H 0.11 2.41 6.55 -51.93 -0.34 2.07 16 25 H 0.08 1.67 6.87 -51.93 -0.36 1.31 16 26 H 0.28 5.99 8.31 -40.82 -0.34 5.65 16 27 H 0.14 2.53 7.62 -52.48 -0.40 2.13 16 28 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.14 2.48 7.62 -52.49 -0.40 2.08 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -27.03 303.14 -9.29 -36.32 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.29 Total: 7.29 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -2.12 Total: -28.43 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.31 Total: -35.76 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.83 Total: -48.94 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 56.31 SS G_CDS: -0.61 Total: 55.70 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.03 -9.29 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304151110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.875 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds