Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47080 * 283.27064 * 3 2 1 5 5 C 1.36940 * 120.00278 * 275.00329 * 4 3 2 6 6 H 1.08000 * 119.99899 * 187.00198 * 5 4 3 7 7 C 1.38810 * 119.99586 * 6.99478 * 5 4 3 8 8 N 1.31616 * 120.00116 * 24.75921 * 7 5 4 9 9 Si 1.86795 * 119.99769 * 204.75202 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00789 * 9 7 5 11 11 H 1.48499 * 109.47098 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47503 * 300.00386 * 9 7 5 13 13 S 1.65599 * 119.99949 * 95.00066 * 4 3 2 14 14 O 1.42100 * 106.40389 * 150.33487 * 13 4 3 15 15 O 1.42100 * 106.40118 * 17.41854 * 13 4 3 16 16 C 1.76204 * 107.21854 * 263.87649 * 13 4 3 17 17 C 1.38241 * 119.99074 * 270.24880 * 16 13 4 18 18 C 1.38213 * 120.01158 * 180.29724 * 17 16 13 19 19 C 1.38323 * 119.98741 * 359.47687 * 18 17 16 20 20 Br 1.89108 * 120.01103 * 180.27611 * 19 18 17 21 21 C 1.38332 * 119.98305 * 0.24913 * 19 18 17 22 22 C 1.38219 * 119.98441 * 0.02562 * 21 19 18 23 23 H 4.40642 * 5.51477 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.46987 * 163.27360 * 3 2 1 25 25 H 1.09003 * 109.47070 * 43.27220 * 3 2 1 26 26 H 0.97002 * 120.00279 * 179.97438 * 8 7 5 27 27 H 1.08003 * 119.99181 * 0.02666 * 17 16 13 28 28 H 1.07996 * 120.00964 * 179.75006 * 18 17 16 29 29 H 1.07996 * 120.00923 * 180.02562 * 21 19 18 30 30 H 1.08001 * 119.99402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3162 1.3443 5 6 3.2648 0.6776 2.2774 6 1 3.7296 0.4670 3.2292 7 6 2.7994 1.9556 1.9998 8 7 1.8390 2.1288 1.1166 9 14 3.5362 3.4294 2.8797 10 1 4.9899 3.5054 2.5861 11 1 2.8703 4.6705 2.4092 12 1 3.3338 3.2841 4.3436 13 16 3.5290 -1.8762 1.7356 14 8 4.5513 -1.7968 2.7194 15 8 3.6860 -2.5708 0.5059 16 6 2.1261 -2.5849 2.5319 17 6 1.9878 -2.4876 3.9040 18 6 0.8907 -3.0488 4.5298 19 6 -0.0746 -3.6984 3.7818 20 35 -1.5800 -4.4596 4.6364 21 6 0.0612 -3.7907 2.4082 22 6 1.1617 -3.2341 1.7840 23 1 -1.0500 0.0002 0.0002 24 1 3.0089 0.9850 -0.2958 25 1 3.0097 -0.7474 -0.7044 26 1 1.5136 3.0218 0.9229 27 1 2.7396 -1.9768 4.4875 28 1 0.7848 -2.9762 5.6021 29 1 -0.6924 -4.2974 1.8237 30 1 1.2681 -3.3064 0.7116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304151110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = 15.818851 kcal Electronic energy + Delta-G solvation = -19839.347897 eV Core-core repulsion = 16581.910331 eV Total energy + Delta-G solvation = -3257.437565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 342.966 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.09517 -38.11684 -37.81878 -36.41880 -33.75628 -33.51562 -32.89431 -32.14260 -30.37501 -28.34375 -25.66753 -23.91676 -23.69553 -20.37397 -19.81238 -19.05171 -18.43238 -18.10671 -16.82267 -16.70853 -16.33560 -15.90337 -15.64221 -15.15075 -14.96887 -14.59184 -14.47972 -14.14574 -13.56724 -13.23904 -13.11279 -12.75173 -12.67184 -12.59686 -12.44304 -12.32013 -12.13939 -11.98668 -11.66239 -11.40600 -11.29455 -10.91564 -10.55190 -10.13317 -10.10372 -9.97347 -8.34627 -5.82142 -0.41784 -0.09419 0.21965 0.40570 1.51743 1.57612 1.65917 2.02704 2.34810 2.37194 2.50895 2.82003 2.91760 3.23423 3.56056 3.82630 3.83615 3.99221 4.25350 4.38576 4.53663 4.55043 4.85325 4.87072 4.96579 5.00290 5.17727 5.24785 5.42117 5.53320 5.70187 6.32629 6.74867 7.15795 7.27199 8.54080 Molecular weight = 342.97amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.004313 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.406195 B = 6490.741911 C = 6824.922107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.142 4.142 3 C 0.235 3.765 4 N -0.802 5.802 5 C -0.271 4.271 6 H 0.117 0.883 7 C 0.003 3.997 8 N -0.831 5.831 9 Si 0.988 3.012 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.266 1.266 13 S 2.540 3.460 14 O -1.003 7.003 15 O -1.014 7.014 16 C -0.662 4.662 17 C -0.037 4.037 18 C -0.116 4.116 19 C -0.062 4.062 20 Br -0.030 7.030 21 C -0.114 4.114 22 C -0.035 4.035 23 H 0.225 0.775 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.280 0.720 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -5.964 4.228 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.623 5.623 5 C -0.418 4.418 6 H 0.135 0.865 7 C -0.209 4.209 8 N -0.468 5.468 9 Si 0.810 3.190 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.190 1.190 13 S 2.641 3.359 14 O -0.993 6.993 15 O -1.004 7.004 16 C -0.743 4.743 17 C -0.057 4.057 18 C -0.136 4.136 19 C -0.142 4.142 20 Br 0.056 6.944 21 C -0.135 4.135 22 C -0.055 4.055 23 H 0.242 0.758 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.158 0.842 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.645 -6.854 4.267 11.119 hybrid contribution -0.470 0.772 0.426 0.999 sum -8.115 -6.082 4.693 11.174 Atomic orbital electron populations 1.24905 0.96102 1.05124 1.01243 1.23477 0.94951 0.96730 0.99302 1.18466 0.84618 1.02512 0.83433 1.55265 1.72847 1.18991 1.15235 1.20205 1.32206 0.87528 1.01836 0.86527 1.26267 0.94800 1.01559 0.98226 1.70289 1.20768 1.24618 1.31168 0.85051 0.78903 0.76305 0.78691 1.19075 1.20093 1.19045 1.11000 0.78460 0.73949 0.72496 1.93330 1.57795 1.86794 1.61396 1.93307 1.87844 1.74449 1.44796 1.32326 1.24291 1.11914 1.05811 1.21040 0.97023 0.94773 0.92848 1.21464 0.93163 0.97680 1.01309 1.22133 0.95082 1.01553 0.95451 1.96683 1.36563 1.81945 1.79199 1.21436 0.98590 1.00358 0.93072 1.20967 0.91819 0.92624 1.00101 0.75835 0.87379 0.89246 0.90914 0.84161 0.82401 0.82405 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.95 19.21 74.32 1.43 -8.52 16 2 C -0.14 -6.10 11.06 31.12 0.34 -5.75 16 3 C 0.23 10.22 5.45 84.57 0.46 10.68 16 4 N -0.80 -36.93 2.89 -352.52 -1.02 -37.95 16 5 C -0.27 -12.68 9.46 84.03 0.79 -11.89 16 6 H 0.12 5.42 7.36 -2.91 -0.02 5.39 16 7 C 0.00 0.13 4.94 84.86 0.42 0.55 16 8 N -0.83 -37.70 8.81 21.65 0.19 -37.51 16 9 Si 0.99 35.76 29.62 68.60 2.03 37.79 16 10 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 11 H -0.28 -9.71 7.11 99.48 0.71 -9.00 16 12 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 13 S 2.54 115.94 5.64 -56.49 -0.32 115.62 16 14 O -1.00 -49.76 16.24 -128.00 -2.08 -51.83 16 15 O -1.01 -48.43 15.73 -128.00 -2.01 -50.44 16 16 C -0.66 -26.96 5.97 22.27 0.13 -26.83 16 17 C -0.04 -1.37 9.52 22.26 0.21 -1.16 16 18 C -0.12 -3.61 9.79 22.28 0.22 -3.39 16 19 C -0.06 -1.85 6.22 22.31 0.14 -1.71 16 20 Br -0.03 -0.69 33.70 -20.37 -0.69 -1.38 16 21 C -0.11 -3.52 9.79 22.29 0.22 -3.31 16 22 C -0.04 -1.29 9.52 22.27 0.21 -1.07 16 23 H 0.22 6.98 7.80 -4.42 -0.03 6.94 16 24 H 0.11 4.75 6.55 -2.39 -0.02 4.73 16 25 H 0.09 3.67 6.87 -2.39 -0.02 3.65 16 26 H 0.28 12.03 8.31 -92.71 -0.77 11.25 16 27 H 0.14 5.09 7.62 -2.91 -0.02 5.06 16 28 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.14 4.92 7.62 -2.91 -0.02 4.89 16 Total: -1.00 -56.88 303.14 1.86 -55.02 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.17 Total: 23.08 kcal Atomic # 6 Polarization: -56.99 SS G_CDS: 4.58 Total: -52.41 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -0.83 Total: -75.45 kcal Atomic # 8 Polarization: -98.18 SS G_CDS: -4.09 Total: -102.28 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 115.94 SS G_CDS: -0.32 Total: 115.62 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.38 kcal Total: -56.88 1.86 -55.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304151110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.839 kcal (2) G-P(sol) polarization free energy of solvation -56.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds