Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48502 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47482 * 299.99994 * 3 2 1 6 6 H 1.48503 * 109.46860 * 60.00452 * 3 2 1 7 7 C 1.40046 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00419 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99972 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99933 * 4.99128 * 9 7 2 11 11 N 1.34777 * 120.00127 * 184.99911 * 9 7 2 12 12 C 1.47209 * 121.32691 * 174.77659 * 11 9 7 13 13 C 1.52782 * 107.94187 * 115.88438 * 12 11 9 14 14 C 1.50594 * 110.86025 * 47.49423 * 13 12 11 15 15 C 1.39077 * 117.62209 * 160.11784 * 14 13 12 16 16 Br 1.89091 * 119.71156 * 358.81421 * 15 14 13 17 17 C 1.38006 * 120.58346 * 178.79248 * 15 14 13 18 18 C 1.38238 * 119.83006 * 359.74296 * 17 15 14 19 19 C 1.38079 * 119.70916 * 0.79733 * 18 17 15 20 20 Cl 1.73607 * 119.74953 * 179.72621 * 19 18 17 21 21 C 1.37626 * 122.85381 * 339.42453 * 14 13 12 22 22 C 1.46683 * 121.32319 * 354.74626 * 11 9 7 23 23 H 0.96999 * 120.00180 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.77019 * 356.27094 * 12 11 9 25 25 H 1.09004 * 109.81283 * 235.51868 * 12 11 9 26 26 H 1.08999 * 109.19668 * 287.14052 * 13 12 11 27 27 H 1.08998 * 109.16612 * 167.82929 * 13 12 11 28 28 H 1.07998 * 120.08558 * 180.02562 * 17 15 14 29 29 H 1.07994 * 120.14578 * 180.55244 * 18 17 15 30 30 H 1.09004 * 109.43376 * 104.45663 * 22 11 9 31 31 H 1.09002 * 109.43853 * 344.59250 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0618 -2.4824 -0.0938 11 7 1.9451 -3.6455 0.0995 12 6 1.2345 -4.9295 0.2156 13 6 1.5589 -5.7608 -1.0245 14 6 3.0394 -5.7574 -1.3002 15 6 3.5480 -6.7721 -2.1039 16 35 2.3883 -8.1062 -2.7752 17 6 4.8916 -6.8137 -2.4162 18 6 5.7408 -5.8364 -1.9315 19 6 5.2406 -4.8342 -1.1242 20 17 6.3074 -3.6104 -0.5091 21 6 3.8889 -4.7944 -0.8049 22 6 3.4114 -3.6846 0.0977 23 1 -0.4850 0.8400 0.0004 24 1 0.1603 -4.7528 0.2703 25 1 1.5673 -5.4564 1.1100 26 1 1.0334 -5.3433 -1.8834 27 1 1.2264 -6.7864 -0.8649 28 1 5.2779 -7.6051 -3.0413 29 1 6.7915 -5.8590 -2.1800 30 1 3.7708 -3.8616 1.1114 31 1 3.7992 -2.7317 -0.2627 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390832989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -14.091668 kcal Electronic energy + Delta-G solvation = -19496.237883 eV Core-core repulsion = 16235.459594 eV Total energy + Delta-G solvation = -3260.778289 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 342.972 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11021 -37.62312 -36.53284 -34.92679 -33.09841 -32.56091 -31.17630 -30.52409 -28.60202 -26.44431 -25.04474 -23.46715 -21.89120 -20.83653 -18.80744 -16.93451 -16.72544 -15.78525 -15.54293 -15.17442 -14.70497 -14.45281 -14.00675 -13.77770 -13.44366 -13.04163 -12.60392 -12.37716 -12.21035 -11.87555 -11.77673 -11.40571 -11.35643 -11.10171 -10.98500 -10.89471 -10.55643 -10.45555 -10.26598 -10.17687 -10.09033 -8.91200 -8.67678 -8.54312 -7.68138 -7.39303 -6.25763 -4.70945 0.85163 1.16812 1.52993 2.12700 3.10264 3.19046 3.23086 3.37775 4.02651 4.36306 4.46291 4.60022 4.64921 5.02635 5.13013 5.28841 5.47786 5.56281 5.64947 5.78623 5.86810 5.94899 5.96660 6.12710 6.17376 6.40952 6.43520 6.52789 6.62978 7.39633 7.43189 8.03222 8.26768 8.96765 9.32375 10.49740 10.68404 Molecular weight = 342.97amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.004420 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.459641 B = 6333.886958 C = 7836.440879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.562 3.438 10 O -0.572 6.572 11 N -0.642 5.642 12 C 0.119 3.881 13 C -0.105 4.105 14 C -0.022 4.022 15 C -0.093 4.093 16 Br -0.048 7.048 17 C -0.087 4.087 18 C -0.113 4.113 19 C -0.020 4.020 20 Cl -0.058 7.058 21 C -0.068 4.068 22 C 0.160 3.840 23 H 0.269 0.731 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -14.941 -4.209 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.369 3.631 10 O -0.455 6.455 11 N -0.380 5.380 12 C -0.005 4.005 13 C -0.143 4.143 14 C -0.024 4.024 15 C -0.173 4.173 16 Br 0.037 6.963 17 C -0.107 4.107 18 C -0.133 4.133 19 C -0.047 4.047 20 Cl -0.029 7.029 21 C -0.071 4.071 22 C 0.036 3.964 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.692 -15.190 -4.449 18.560 hybrid contribution 1.059 1.068 0.063 1.505 sum 10.751 -14.122 -4.386 18.283 Atomic orbital electron populations 1.70011 1.07073 1.27342 1.35018 1.25708 0.94607 1.00305 0.92490 0.86354 0.80640 0.81777 0.78327 1.18603 1.20070 1.20059 1.20989 0.93610 0.89134 1.54161 0.90922 1.18235 0.86899 0.81847 0.76138 1.90601 1.14209 1.85797 1.54845 1.48261 1.03790 1.06197 1.79786 1.21162 0.99859 0.85120 0.94379 1.21111 0.90012 1.01640 1.01508 1.19449 0.96797 0.91713 0.94460 1.21984 0.94362 0.97279 1.03682 1.96658 1.64086 1.49968 1.85551 1.20872 0.91162 0.98957 0.99725 1.20888 1.00517 0.93763 0.98097 1.20991 0.90937 0.92992 0.99824 1.98381 1.64394 1.53864 1.86289 1.20119 0.90853 0.97414 0.98727 1.20345 0.83649 0.96272 0.96172 0.92037 0.88760 0.93067 0.89296 0.89661 0.84428 0.84244 0.91547 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.52 11.84 55.55 0.66 -21.86 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.90 19.80 29.56 -169.99 -5.02 14.78 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -14.91 8.83 -35.63 -0.31 -15.23 16 8 H 0.07 1.83 5.88 -52.48 -0.31 1.53 16 9 C 0.56 15.65 7.64 -12.99 -0.10 15.56 16 10 O -0.57 -18.07 14.54 5.20 0.08 -17.99 16 11 N -0.64 -14.35 2.94 -176.07 -0.52 -14.86 16 12 C 0.12 2.26 6.43 -3.77 -0.02 2.23 16 13 C -0.10 -1.70 5.17 -28.05 -0.14 -1.85 16 14 C -0.02 -0.34 5.76 -104.59 -0.60 -0.95 16 15 C -0.09 -1.26 6.22 -39.36 -0.24 -1.50 16 16 Br -0.05 -0.57 31.65 -68.01 -2.15 -2.73 16 17 C -0.09 -1.00 9.77 -39.67 -0.39 -1.39 16 18 C -0.11 -1.32 9.82 -39.64 -0.39 -1.71 16 19 C -0.02 -0.28 6.31 -39.38 -0.25 -0.53 16 20 Cl -0.06 -0.78 27.43 -51.86 -1.42 -2.21 16 21 C -0.07 -1.12 5.82 -104.53 -0.61 -1.73 16 22 C 0.16 3.01 5.20 -5.04 -0.03 2.98 16 23 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 24 H 0.09 1.96 7.09 -51.93 -0.37 1.59 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.19 6.84 -51.93 -0.36 0.83 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.11 2.20 5.10 -51.93 -0.26 1.93 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -32.02 295.49 -9.66 -41.68 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.54 Total: 0.51 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.19 Total: -1.76 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.14 Total: -36.73 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.08 Total: -17.99 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.42 Total: -2.21 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.15 Total: -2.73 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.02 -9.66 -41.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390832989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.588 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds