Wall clock time and date at job start Tue Mar 31 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27021 * 125.11720 * 2 1 4 4 N 1.39346 * 114.47626 * 180.20620 * 3 2 1 5 5 C 1.34772 * 125.64990 * 179.76571 * 4 3 2 6 6 O 1.21792 * 120.00127 * 174.54959 * 5 4 3 7 7 C 1.41754 * 119.99973 * 354.54638 * 5 4 3 8 8 H 1.07996 * 119.99305 * 6.41427 * 7 5 4 9 9 C 1.40172 * 119.99944 * 186.41805 * 7 5 4 10 10 N 1.30619 * 119.99915 * 184.81283 * 9 7 5 11 11 Si 1.86804 * 120.00247 * 4.80576 * 9 7 5 12 12 H 1.48493 * 109.47346 * 180.02562 * 11 9 7 13 13 H 1.48492 * 109.47059 * 60.00229 * 11 9 7 14 14 H 1.48509 * 109.46852 * 300.00431 * 11 9 7 15 15 C 1.47236 * 108.69879 * 359.50606 * 4 3 2 16 16 O 1.42898 * 110.65690 * 241.82050 * 15 4 3 17 17 C 1.50699 * 110.66256 * 118.87139 * 15 4 3 18 18 C 1.38240 * 119.99478 * 351.47300 * 17 15 4 19 19 C 1.38195 * 120.02936 * 179.72596 * 18 17 15 20 20 C 1.38386 * 120.01180 * 0.54921 * 19 18 17 21 21 Cl 1.73597 * 120.01050 * 179.74455 * 20 19 18 22 22 C 1.38313 * 119.98247 * 359.72504 * 20 19 18 23 23 C 1.38336 * 119.99235 * 171.74731 * 17 15 4 24 24 Cl 1.73598 * 120.00539 * 0.02562 * 23 17 15 25 25 C 1.51210 * 125.12487 * 179.67048 * 2 1 3 26 26 H 1.08997 * 109.47303 * 270.32836 * 1 2 3 27 27 H 1.08997 * 109.47381 * 30.33284 * 1 2 3 28 28 H 1.09000 * 109.46939 * 150.32905 * 1 2 3 29 29 H 0.96996 * 119.99192 * 354.90114 * 10 9 7 30 30 H 0.96703 * 113.99939 * 298.54230 * 16 15 4 31 31 H 1.08010 * 119.98681 * 0.02562 * 18 17 15 32 32 H 1.07996 * 119.99675 * 180.27193 * 19 18 17 33 33 H 1.08004 * 120.01127 * 179.97438 * 22 20 19 34 34 H 1.09003 * 110.55875 * 61.41439 * 25 2 1 35 35 H 1.09000 * 110.67913 * 298.63748 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2377 1.0390 0.0000 4 7 3.6072 0.7817 -0.0046 5 6 4.5814 1.7130 -0.0100 6 8 5.7475 1.3750 0.0865 7 6 4.2488 3.0859 -0.1281 8 1 3.2140 3.3942 -0.1095 9 6 5.2631 4.0431 -0.2692 10 7 4.9638 5.3144 -0.2835 11 14 7.0427 3.5005 -0.4365 12 1 7.9140 4.6955 -0.5705 13 1 7.1879 2.6439 -1.6407 14 1 7.4410 2.7307 0.7695 15 6 3.8136 -0.6761 0.0038 16 8 4.5148 -1.0792 1.1819 17 6 4.5567 -1.1151 -1.2316 18 6 4.7859 -0.2159 -2.2562 19 6 5.4721 -0.6161 -3.3870 20 6 5.9204 -1.9206 -3.4991 21 17 6.7767 -2.4251 -4.9224 22 6 5.6864 -2.8222 -2.4767 23 6 5.0043 -2.4193 -1.3424 24 17 4.7095 -3.5504 -0.0589 25 6 2.3770 -1.2367 0.0071 26 1 -0.3634 0.0059 1.0276 27 1 -0.3634 0.8869 -0.5190 28 1 -0.3633 -0.8929 -0.5087 29 1 4.0351 5.5941 -0.2711 30 1 5.3983 -0.6948 1.2646 31 1 4.4326 0.8013 -2.1710 32 1 5.6547 0.0879 -4.1853 33 1 6.0357 -3.8404 -2.5639 34 1 2.1978 -1.8359 -0.8857 35 1 2.1987 -1.8276 0.9055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408563302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:47 Heat of formation + Delta-G solvation = -26.250533 kcal Electronic energy + Delta-G solvation = -25955.591603 eV Core-core repulsion = 22006.432414 eV Total energy + Delta-G solvation = -3949.159189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 342.032 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79054 -38.87839 -37.26913 -36.79188 -36.21847 -35.67302 -33.16117 -32.32505 -31.42897 -30.84876 -28.69671 -28.07632 -26.51466 -23.60684 -22.91182 -21.50628 -20.21803 -19.38890 -17.90969 -17.83500 -16.59394 -16.06304 -15.57910 -15.25937 -14.93007 -14.51343 -14.14679 -14.08796 -13.79916 -13.68059 -13.60898 -13.06065 -12.87372 -12.60719 -12.47908 -12.32971 -12.23980 -12.12962 -11.88001 -11.62581 -11.16058 -11.03647 -10.99861 -10.98965 -10.51273 -10.33379 -10.26547 -9.71574 -9.23386 -9.18797 -8.94295 -8.66872 -8.20024 -7.92282 -7.25538 -5.21587 0.91043 1.11729 1.79518 2.28131 2.43935 3.20737 3.37849 3.43388 3.61090 3.99000 3.99278 4.14237 4.39391 4.54153 4.61363 4.75029 4.90546 5.03066 5.15589 5.25573 5.35787 5.37275 5.59889 5.65511 5.75910 5.77405 5.81788 5.90065 6.01709 6.12918 6.32323 6.51246 6.59055 7.40550 7.58330 7.81527 7.93450 7.96470 8.59118 8.85813 9.73002 10.06468 Molecular weight = 342.03amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.006024 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.246339 B = 4646.878594 C = 6342.953023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.038 3.962 3 N -0.202 5.202 4 N -0.482 5.482 5 C 0.566 3.434 6 O -0.612 6.612 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.060 3.940 10 N -0.807 5.807 11 Si 1.126 2.874 12 H -0.319 1.319 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.358 3.642 16 O -0.545 6.545 17 C -0.096 4.096 18 C -0.052 4.052 19 C -0.107 4.107 20 C -0.020 4.020 21 Cl -0.065 7.065 22 C -0.114 4.114 23 C -0.005 4.005 24 Cl -0.045 7.045 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.284 0.716 30 H 0.392 0.608 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -15.359 -5.168 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.157 4.157 3 N -0.010 5.010 4 N -0.311 5.311 5 C 0.386 3.614 6 O -0.505 6.505 7 C -0.595 4.595 8 H 0.104 0.896 9 C -0.161 4.161 10 N -0.433 5.433 11 Si 0.958 3.042 12 H -0.251 1.251 13 H -0.215 1.215 14 H -0.204 1.204 15 C 0.232 3.768 16 O -0.349 6.349 17 C -0.099 4.099 18 C -0.071 4.071 19 C -0.126 4.126 20 C -0.046 4.046 21 Cl -0.037 7.037 22 C -0.133 4.133 23 C -0.033 4.033 24 Cl -0.016 7.016 25 C -0.148 4.148 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.243 0.757 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.115 0.885 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.041 -14.314 -5.084 15.492 hybrid contribution -1.040 -1.157 0.061 1.556 sum -4.081 -15.471 -5.023 16.770 Atomic orbital electron populations 1.20182 0.86136 1.03346 1.03062 1.24921 0.97044 0.90389 1.03360 1.73833 0.91358 1.27324 1.08470 1.50732 1.01205 1.04245 1.74912 1.16813 0.81577 0.85503 0.77490 1.90200 1.17384 1.80535 1.62393 1.21404 0.97769 0.90473 1.49824 0.89617 1.27458 1.08209 0.92092 0.88383 1.70588 1.23608 1.16405 1.32653 0.82406 0.70903 0.71708 0.79157 1.25083 1.21528 1.20428 1.20419 0.91159 0.82345 0.82904 1.86497 1.34534 1.72219 1.41631 1.20339 1.00148 0.92107 0.97312 1.21222 0.94816 1.00143 0.90922 1.21174 0.98094 0.94178 0.99179 1.20748 0.99691 0.94549 0.89660 1.98365 1.75751 1.91274 1.38262 1.20761 1.00511 1.00363 0.91687 1.20460 1.01127 0.90774 0.90909 1.98379 1.94506 1.59680 1.49031 1.22008 0.89680 0.98292 1.04870 0.90486 0.90412 0.90595 0.90500 0.75691 0.83424 0.84167 0.83943 0.88463 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.48 36.00 0.38 -0.35 16 2 C 0.04 0.60 7.43 -79.06 -0.59 0.01 16 3 N -0.20 -4.11 11.11 34.85 0.39 -3.73 16 4 N -0.48 -10.67 2.90 -54.85 -0.16 -10.83 16 5 C 0.57 14.55 5.42 -14.92 -0.08 14.47 16 6 O -0.61 -16.21 10.29 5.10 0.05 -16.16 16 7 C -0.56 -15.41 9.48 -37.51 -0.36 -15.77 16 8 H 0.09 2.43 7.64 -52.49 -0.40 2.03 16 9 C 0.06 1.65 5.52 -17.34 -0.10 1.55 16 10 N -0.81 -22.27 13.64 55.56 0.76 -21.52 16 11 Si 1.13 28.41 25.96 -169.99 -4.41 23.99 16 12 H -0.32 -7.83 7.11 56.52 0.40 -7.43 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.28 -7.21 6.77 56.52 0.38 -6.83 16 15 C 0.36 6.65 0.88 -68.05 -0.06 6.59 16 16 O -0.54 -10.36 11.24 -35.23 -0.40 -10.75 16 17 C -0.10 -1.69 4.46 -104.59 -0.47 -2.16 16 18 C -0.05 -0.96 8.43 -39.60 -0.33 -1.30 16 19 C -0.11 -1.69 9.83 -39.54 -0.39 -2.07 16 20 C -0.02 -0.28 6.32 -39.50 -0.25 -0.53 16 21 Cl -0.07 -0.79 28.96 -51.86 -1.50 -2.29 16 22 C -0.11 -1.55 9.62 -39.51 -0.38 -1.93 16 23 C -0.01 -0.08 6.21 -39.50 -0.25 -0.32 16 24 Cl -0.05 -0.62 26.09 -51.86 -1.35 -1.97 16 25 C -0.11 -1.64 5.85 -27.00 -0.16 -1.79 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.28 7.55 8.72 -40.82 -0.36 7.20 16 30 H 0.39 7.80 7.89 45.56 0.36 8.16 16 31 H 0.15 3.12 5.91 -52.48 -0.31 2.81 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.10 1.28 7.74 -51.93 -0.40 0.88 16 35 H 0.11 1.50 8.00 -51.93 -0.42 1.08 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -30.00 327.53 -7.17 -37.17 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.45 Total: 4.75 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.02 Total: -3.59 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.99 Total: -36.07 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.34 Total: -26.92 kcal Atomic # 14 Polarization: 28.41 SS G_CDS: -4.41 Total: 23.99 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -2.85 Total: -4.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.00 -7.17 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408563302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.917 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds