Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38171 * 120.49843 * 2 1 4 4 N 1.31794 * 120.89424 * 180.28741 * 3 2 1 5 5 C 1.31836 * 122.04998 * 359.73123 * 4 3 2 6 6 C 1.38130 * 120.89275 * 0.02562 * 5 4 3 7 7 C 1.39800 * 120.50017 * 179.76372 * 2 1 3 8 8 C 1.48153 * 120.92029 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00001 * 353.64346 * 8 7 2 10 10 N 1.34780 * 119.99879 * 173.65105 * 8 7 2 11 11 C 1.46488 * 119.99916 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.91823 * 31.09784 * 11 10 8 13 13 C 1.54916 * 111.00863 * 267.19453 * 11 10 8 14 14 N 1.47420 * 104.83245 * 204.92274 * 13 11 10 15 15 C 1.36946 * 125.64450 * 204.15012 * 14 13 11 16 16 H 1.07994 * 119.99988 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99876 * 359.97095 * 15 14 13 18 18 N 1.31618 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46844 * 89.99884 * 19 17 15 21 21 H 1.48493 * 109.47345 * 209.99820 * 19 17 15 22 22 H 1.48499 * 109.47103 * 330.00288 * 19 17 15 23 23 C 1.47015 * 108.70902 * 24.12165 * 14 13 11 24 24 C 1.54326 * 107.26985 * 358.94505 * 23 14 13 25 25 H 1.08999 * 110.72031 * 219.44095 * 24 23 14 26 26 N 1.46510 * 110.87127 * 96.23880 * 24 23 14 27 27 C 1.35311 * 125.86693 * 331.38573 * 26 24 23 28 28 C 1.35349 * 106.17574 * 180.02562 * 27 26 24 29 29 N 1.33776 * 106.49305 * 0.02562 * 28 27 26 30 30 N 1.28633 * 108.88582 * 359.73660 * 29 28 27 31 31 H 1.08997 * 109.47369 * 263.89693 * 1 2 3 32 32 H 1.08994 * 109.47097 * 23.90114 * 1 2 3 33 33 H 1.09004 * 109.46795 * 143.90159 * 1 2 3 34 34 H 1.08000 * 119.55020 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.55232 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.49242 * 179.97438 * 6 5 4 37 37 H 0.97000 * 119.99507 * 359.97438 * 10 8 7 38 38 H 1.09006 * 110.35953 * 323.75616 * 13 11 10 39 39 H 1.08995 * 110.36510 * 86.07785 * 13 11 10 40 40 H 0.96998 * 120.00468 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.88735 * 239.52523 * 23 14 13 42 42 H 1.09008 * 109.88003 * 118.35844 * 23 14 13 43 43 H 1.08005 * 126.91079 * 359.97438 * 27 26 24 44 44 H 1.08002 * 126.75299 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1997 -0.0057 5 6 4.2335 0.0871 -0.0063 6 6 3.6137 -1.1473 -0.0015 7 6 2.2166 -1.2045 0.0050 8 6 1.5078 -2.5055 0.0098 9 8 0.2987 -2.5383 0.1259 10 7 2.2043 -3.6528 -0.1146 11 6 1.5036 -4.9392 -0.1093 12 1 0.5054 -4.8404 -0.5359 13 6 1.4399 -5.5311 1.3209 14 7 1.3033 -6.9853 1.1218 15 6 0.7578 -7.8658 2.0178 16 1 0.7028 -8.9170 1.7766 17 6 0.2757 -7.4070 3.2359 18 7 0.3423 -6.1257 3.5297 19 14 -0.4690 -8.6077 4.4577 20 1 0.5952 -9.1243 5.3555 21 1 -1.5042 -7.9141 5.2653 22 1 -1.0899 -9.7396 3.7238 23 6 1.8489 -7.3339 -0.1981 24 6 2.3238 -6.0224 -0.8584 25 1 2.0869 -6.0184 -1.9223 26 7 3.7600 -5.8225 -0.6484 27 6 4.4785 -6.2793 0.4032 28 6 5.7519 -5.8701 0.1961 29 7 5.7499 -5.1914 -0.9567 30 7 4.5557 -5.1858 -1.4345 31 1 -0.3634 -0.1093 1.0218 32 1 -0.3633 0.9395 -0.4163 33 1 -0.3633 -0.8304 -0.6055 34 1 1.6691 2.1263 -0.0004 35 1 5.3120 0.1416 -0.0106 36 1 4.1995 -2.0547 -0.0025 37 1 3.1694 -3.6265 -0.2076 38 1 2.3575 -5.3073 1.8652 39 1 0.5752 -5.1384 1.8558 40 1 0.0058 -5.8051 4.3810 41 1 1.0741 -7.7971 -0.8090 42 1 2.6906 -8.0168 -0.0827 43 1 4.1099 -6.8541 1.2401 44 1 6.6022 -6.0544 0.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685940887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = 148.095658 kcal Electronic energy + Delta-G solvation = -30493.244198 eV Core-core repulsion = 26449.620603 eV Total energy + Delta-G solvation = -4043.623595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.16268 -40.77775 -39.25850 -37.87122 -34.49904 -33.77309 -33.42586 -32.21076 -31.71926 -30.76333 -28.99225 -27.91341 -27.21149 -25.19796 -24.50971 -22.87518 -22.46204 -22.22980 -21.11076 -20.27117 -20.19692 -18.39002 -17.65797 -17.12519 -16.65388 -16.08320 -15.46943 -15.35252 -15.27402 -15.06682 -14.74309 -14.68832 -14.11021 -13.90239 -13.82236 -13.49856 -13.42795 -13.04703 -12.81782 -12.70230 -12.51186 -12.37734 -11.94732 -11.64972 -11.55851 -11.44535 -11.09101 -10.88923 -10.80191 -10.58356 -10.27642 -10.20448 -10.04127 -9.94707 -9.90967 -9.37218 -9.17897 -9.07438 -8.91457 -8.79336 -7.20522 -5.90391 -3.37339 0.64232 0.94723 1.78572 2.44727 2.73218 2.92794 3.09801 3.26916 3.32505 3.35167 3.73690 4.23971 4.26874 4.40728 4.54856 4.60270 4.65165 4.71349 4.80848 4.86269 4.98274 5.24718 5.25945 5.32148 5.41279 5.47465 5.50952 5.54927 5.66301 5.69852 5.75388 5.76445 5.97174 5.98960 6.04517 6.10852 6.27740 6.32854 6.44661 6.52497 6.82793 7.04426 7.32273 7.48425 7.58577 7.75878 8.03555 8.22444 8.66828 8.91085 9.51993 10.08805 11.12785 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004189 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.603230 B = 6682.053328 C = 8477.037044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C 0.090 3.910 4 N -0.467 5.467 5 C 0.087 3.913 6 C -0.132 4.132 7 C -0.090 4.090 8 C 0.559 3.441 9 O -0.515 6.515 10 N -0.708 5.708 11 C 0.110 3.890 12 H 0.120 0.880 13 C 0.145 3.855 14 N -0.597 5.597 15 C -0.238 4.238 16 H 0.083 0.917 17 C 0.000 4.000 18 N -0.915 5.915 19 Si 0.919 3.081 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.130 3.870 24 C 0.116 3.884 25 H 0.121 0.879 26 N -0.278 5.278 27 C -0.017 4.017 28 C -0.067 4.067 29 N -0.276 5.276 30 N -0.104 5.104 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.396 0.604 38 H 0.021 0.979 39 H 0.123 0.877 40 H 0.257 0.743 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.194 0.806 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 7.371 -7.275 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.068 4.068 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.101 4.101 8 C 0.346 3.654 9 O -0.391 6.391 10 N -0.360 5.360 11 C 0.003 3.997 12 H 0.137 0.863 13 C 0.019 3.981 14 N -0.325 5.325 15 C -0.365 4.365 16 H 0.101 0.899 17 C -0.197 4.197 18 N -0.561 5.561 19 Si 0.749 3.251 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.002 3.998 24 C 0.013 3.987 25 H 0.139 0.861 26 N -0.071 5.071 27 C -0.169 4.169 28 C -0.224 4.224 29 N -0.142 5.142 30 N -0.083 5.083 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.152 0.848 37 H 0.232 0.768 38 H 0.039 0.961 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.211 0.789 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.968 8.912 -8.309 13.159 hybrid contribution -0.256 -2.195 1.710 2.794 sum 4.711 6.717 -6.599 10.529 Atomic orbital electron populations 1.20993 0.88906 1.03304 1.04152 1.21131 0.98519 0.92331 0.95868 1.22723 0.89770 0.97324 0.96957 1.67537 1.08317 1.31738 1.10011 1.22679 1.00547 0.87112 0.96617 1.22340 0.93955 1.00216 0.98727 1.20273 0.93720 0.93984 1.02083 1.18068 0.87031 0.83342 0.76971 1.90762 1.13222 1.86840 1.48278 1.45694 1.10822 1.05521 1.73979 1.23129 0.95478 0.80127 1.00960 0.86276 1.22413 1.03400 0.83200 0.89084 1.44388 1.70810 1.03594 1.13710 1.19018 1.33294 0.89351 0.94861 0.89890 1.24833 1.00637 0.96402 0.97866 1.69733 1.50914 1.12013 1.23451 0.86023 0.78648 0.79608 0.80863 1.21400 1.21471 1.20483 1.21664 0.97680 0.91135 0.89296 1.23238 0.73480 0.99484 1.02502 0.86127 1.47471 1.09925 1.34679 1.15050 1.23917 0.92155 1.04864 0.95963 1.23566 0.97524 1.03565 0.97792 1.75056 1.11642 1.17921 1.09601 1.78269 0.95725 1.16234 1.18040 0.90093 0.91948 0.88569 0.82149 0.82143 0.84821 0.76757 0.96084 0.85954 0.93227 0.92564 0.93980 0.78853 0.79601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.83 36.01 0.32 -1.10 16 2 C -0.08 -0.99 5.93 -104.06 -0.62 -1.61 16 3 C 0.09 1.06 10.84 -17.59 -0.19 0.87 16 4 N -0.47 -5.95 10.34 -13.30 -0.14 -6.08 16 5 C 0.09 1.02 11.17 -17.59 -0.20 0.83 16 6 C -0.13 -1.69 9.60 -39.03 -0.37 -2.07 16 7 C -0.09 -1.30 5.91 -104.65 -0.62 -1.92 16 8 C 0.56 9.38 7.73 -12.19 -0.09 9.28 16 9 O -0.51 -9.82 13.18 5.35 0.07 -9.75 16 10 N -0.71 -11.40 5.12 -52.57 -0.27 -11.67 16 11 C 0.11 1.89 3.29 -65.78 -0.22 1.68 16 12 H 0.12 2.13 7.54 -51.93 -0.39 1.74 16 13 C 0.14 3.10 5.18 -2.53 -0.01 3.08 16 14 N -0.60 -12.89 3.39 -170.07 -0.58 -13.47 16 15 C -0.24 -5.81 10.27 -15.05 -0.15 -5.97 16 16 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 17 C 0.00 -0.01 5.49 -17.43 -0.10 -0.11 16 18 N -0.91 -24.69 10.09 55.49 0.56 -24.13 16 19 Si 0.92 20.44 29.55 -169.99 -5.02 15.41 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.13 2.18 6.29 -3.07 -0.02 2.16 16 24 C 0.12 1.74 3.96 -66.09 -0.26 1.47 16 25 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 26 N -0.28 -4.17 2.37 -52.97 -0.13 -4.30 16 27 C -0.02 -0.26 9.37 -17.05 -0.16 -0.42 16 28 C -0.07 -0.92 12.05 -17.73 -0.21 -1.13 16 29 N -0.28 -4.29 12.41 30.24 0.38 -3.91 16 30 N -0.10 -1.63 12.30 60.35 0.74 -0.89 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.10 1.36 5.96 -51.93 -0.31 1.05 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.63 6.58 -52.48 -0.35 1.29 16 37 H 0.40 6.08 4.99 -40.82 -0.20 5.88 16 38 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 39 H 0.12 3.17 5.87 -51.93 -0.30 2.86 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.70 7.17 -51.92 -0.37 0.32 16 43 H 0.19 3.00 7.71 -52.48 -0.40 2.59 16 44 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -29.33 362.21 -7.06 -36.39 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.23 Total: 11.89 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.91 Total: 5.04 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.57 Total: -64.44 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.33 -7.06 -36.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685940887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.486 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds