Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38171 * 120.49843 * 2 1 4 4 N 1.31794 * 120.89424 * 180.28741 * 3 2 1 5 5 C 1.31836 * 122.04998 * 359.73123 * 4 3 2 6 6 C 1.38130 * 120.89275 * 0.02562 * 5 4 3 7 7 C 1.39800 * 120.50017 * 179.76372 * 2 1 3 8 8 C 1.48153 * 120.92029 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00001 * 353.64346 * 8 7 2 10 10 N 1.34780 * 119.99879 * 173.65105 * 8 7 2 11 11 C 1.46488 * 119.99916 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.91823 * 31.09784 * 11 10 8 13 13 C 1.54916 * 111.00863 * 267.19453 * 11 10 8 14 14 N 1.47420 * 104.83245 * 204.92274 * 13 11 10 15 15 C 1.36946 * 125.64450 * 204.15012 * 14 13 11 16 16 H 1.07994 * 119.99988 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99876 * 359.97095 * 15 14 13 18 18 N 1.31618 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46844 * 89.99884 * 19 17 15 21 21 H 1.48493 * 109.47345 * 209.99820 * 19 17 15 22 22 H 1.48499 * 109.47103 * 330.00288 * 19 17 15 23 23 C 1.47015 * 108.70902 * 24.12165 * 14 13 11 24 24 C 1.54326 * 107.26985 * 358.94505 * 23 14 13 25 25 H 1.08999 * 110.72031 * 219.44095 * 24 23 14 26 26 N 1.46510 * 110.87127 * 96.23880 * 24 23 14 27 27 C 1.35311 * 125.86693 * 331.38573 * 26 24 23 28 28 C 1.35349 * 106.17574 * 180.02562 * 27 26 24 29 29 N 1.33776 * 106.49305 * 0.02562 * 28 27 26 30 30 N 1.28633 * 108.88582 * 359.73660 * 29 28 27 31 31 H 1.08997 * 109.47369 * 263.89693 * 1 2 3 32 32 H 1.08994 * 109.47097 * 23.90114 * 1 2 3 33 33 H 1.09004 * 109.46795 * 143.90159 * 1 2 3 34 34 H 1.08000 * 119.55020 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.55232 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.49242 * 179.97438 * 6 5 4 37 37 H 0.97000 * 119.99507 * 359.97438 * 10 8 7 38 38 H 1.09006 * 110.35953 * 323.75616 * 13 11 10 39 39 H 1.08995 * 110.36510 * 86.07785 * 13 11 10 40 40 H 0.96998 * 120.00468 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.88735 * 239.52523 * 23 14 13 42 42 H 1.09008 * 109.88003 * 118.35844 * 23 14 13 43 43 H 1.08005 * 126.91079 * 359.97438 * 27 26 24 44 44 H 1.08002 * 126.75299 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1997 -0.0057 5 6 4.2335 0.0871 -0.0063 6 6 3.6137 -1.1473 -0.0015 7 6 2.2166 -1.2045 0.0050 8 6 1.5078 -2.5055 0.0098 9 8 0.2987 -2.5383 0.1259 10 7 2.2043 -3.6528 -0.1146 11 6 1.5036 -4.9392 -0.1093 12 1 0.5054 -4.8404 -0.5359 13 6 1.4399 -5.5311 1.3209 14 7 1.3033 -6.9853 1.1218 15 6 0.7578 -7.8658 2.0178 16 1 0.7028 -8.9170 1.7766 17 6 0.2757 -7.4070 3.2359 18 7 0.3423 -6.1257 3.5297 19 14 -0.4690 -8.6077 4.4577 20 1 0.5952 -9.1243 5.3555 21 1 -1.5042 -7.9141 5.2653 22 1 -1.0899 -9.7396 3.7238 23 6 1.8489 -7.3339 -0.1981 24 6 2.3238 -6.0224 -0.8584 25 1 2.0869 -6.0184 -1.9223 26 7 3.7600 -5.8225 -0.6484 27 6 4.4785 -6.2793 0.4032 28 6 5.7519 -5.8701 0.1961 29 7 5.7499 -5.1914 -0.9567 30 7 4.5557 -5.1858 -1.4345 31 1 -0.3634 -0.1093 1.0218 32 1 -0.3633 0.9395 -0.4163 33 1 -0.3633 -0.8304 -0.6055 34 1 1.6691 2.1263 -0.0004 35 1 5.3120 0.1416 -0.0106 36 1 4.1995 -2.0547 -0.0025 37 1 3.1694 -3.6265 -0.2076 38 1 2.3575 -5.3073 1.8652 39 1 0.5752 -5.1384 1.8558 40 1 0.0058 -5.8051 4.3810 41 1 1.0741 -7.7971 -0.8090 42 1 2.6906 -8.0168 -0.0827 43 1 4.1099 -6.8541 1.2401 44 1 6.6022 -6.0544 0.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685940887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = 128.966538 kcal Electronic energy + Delta-G solvation = -30494.073698 eV Core-core repulsion = 26449.620603 eV Total energy + Delta-G solvation = -4044.453096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.35460 -41.89665 -40.51193 -39.28234 -36.01018 -35.12466 -34.47497 -33.55926 -33.06323 -31.94743 -30.52115 -29.31243 -28.32361 -26.81135 -25.69242 -24.14442 -23.67990 -23.31677 -22.46031 -21.69484 -21.53578 -19.62549 -19.07670 -18.65870 -17.77900 -17.30795 -16.85362 -16.69565 -16.35391 -16.28466 -16.10706 -15.88636 -15.68918 -15.13486 -15.00084 -14.78690 -14.46579 -14.41992 -14.34573 -13.98129 -13.69619 -13.53843 -13.23064 -13.20288 -12.83124 -12.77128 -12.60937 -12.36877 -12.33458 -12.10541 -11.93898 -11.83605 -11.40104 -11.21707 -10.99413 -10.79337 -10.48100 -10.33717 -10.25371 -9.98782 -9.01842 -7.82353 -5.29459 -0.44118 -0.00202 0.57720 1.22483 1.48972 1.50121 1.58321 1.59611 1.68901 1.80969 2.45922 2.72071 3.11516 3.27364 3.31562 3.38239 3.41205 3.54016 3.66966 3.69200 3.73779 3.85329 3.89919 4.13113 4.21677 4.29292 4.31145 4.35910 4.54766 4.66152 4.67900 4.73831 4.75864 4.77054 4.79290 4.97185 5.05970 5.25474 5.33927 5.37527 5.47152 5.55975 5.60944 5.68724 6.15623 6.21185 6.80848 6.90373 7.00651 7.48477 7.67305 8.25215 9.18624 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004189 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.603230 B = 6682.053328 C = 8477.037044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C 0.097 3.903 4 N -0.477 5.477 5 C 0.090 3.910 6 C -0.134 4.134 7 C -0.111 4.111 8 C 0.555 3.445 9 O -0.546 6.546 10 N -0.702 5.702 11 C 0.121 3.879 12 H 0.112 0.888 13 C 0.160 3.840 14 N -0.613 5.613 15 C -0.235 4.235 16 H 0.094 0.906 17 C -0.058 4.058 18 N -0.946 5.946 19 Si 0.976 3.024 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.266 1.266 23 C 0.130 3.870 24 C 0.131 3.869 25 H 0.153 0.847 26 N -0.278 5.278 27 C -0.029 4.029 28 C -0.054 4.054 29 N -0.289 5.289 30 N -0.110 5.110 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.194 0.806 35 H 0.190 0.810 36 H 0.137 0.863 37 H 0.401 0.599 38 H -0.001 1.001 39 H 0.075 0.925 40 H 0.245 0.755 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.185 0.815 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 7.592 -8.636 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.061 4.061 4 N -0.186 5.186 5 C -0.066 4.066 6 C -0.154 4.154 7 C -0.122 4.122 8 C 0.343 3.657 9 O -0.424 6.424 10 N -0.354 5.354 11 C 0.013 3.987 12 H 0.130 0.870 13 C 0.034 3.966 14 N -0.340 5.340 15 C -0.363 4.363 16 H 0.112 0.888 17 C -0.251 4.251 18 N -0.595 5.595 19 Si 0.805 3.195 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.191 1.191 23 C 0.004 3.996 24 C 0.028 3.972 25 H 0.170 0.830 26 N -0.072 5.072 27 C -0.180 4.180 28 C -0.211 4.211 29 N -0.155 5.155 30 N -0.089 5.089 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.211 0.789 35 H 0.207 0.793 36 H 0.155 0.845 37 H 0.239 0.761 38 H 0.017 0.983 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.202 0.798 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.479 9.110 -9.716 14.811 hybrid contribution -0.654 -2.247 2.109 3.151 sum 5.825 6.863 -7.607 11.785 Atomic orbital electron populations 1.20923 0.88574 1.04137 1.03217 1.21326 0.98944 0.92439 0.96089 1.23202 0.89631 0.97913 0.95311 1.67644 1.08736 1.31989 1.10228 1.23138 1.01897 0.86333 0.95208 1.22401 0.93161 1.01022 0.98853 1.20262 0.94632 0.93207 1.04072 1.18536 0.86857 0.84270 0.76080 1.90749 1.14599 1.87382 1.49645 1.45610 1.10967 1.05056 1.73750 1.22743 0.96150 0.81221 0.98537 0.86988 1.21930 1.00062 0.83633 0.91004 1.44509 1.70935 1.03413 1.15183 1.19406 1.31608 0.90239 0.95046 0.88848 1.25562 1.02105 0.97574 0.99842 1.70019 1.52656 1.13642 1.23163 0.85108 0.77477 0.78042 0.78852 1.21360 1.22914 1.19086 1.21816 0.98319 0.92263 0.87251 1.23127 0.73321 0.97144 1.03598 0.82982 1.47447 1.09754 1.34807 1.15162 1.23935 0.92761 1.05492 0.95858 1.24061 0.97968 1.01837 0.97188 1.75061 1.11552 1.18471 1.10375 1.78265 0.95955 1.16435 1.18241 0.91216 0.88577 0.90889 0.78930 0.79268 0.84504 0.76132 0.98297 0.90715 0.94490 0.90588 0.92859 0.79774 0.76466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 8.83 71.24 0.63 -2.07 16 2 C -0.09 -2.17 5.93 -19.50 -0.12 -2.29 16 3 C 0.10 2.07 10.84 84.68 0.92 2.99 16 4 N -0.48 -11.03 10.34 -196.01 -2.03 -13.06 16 5 C 0.09 1.94 11.17 84.67 0.95 2.88 16 6 C -0.13 -3.31 9.60 22.63 0.22 -3.09 16 7 C -0.11 -3.22 5.91 -19.88 -0.12 -3.34 16 8 C 0.55 19.16 7.73 86.88 0.67 19.83 16 9 O -0.55 -21.86 13.18 -3.77 -0.05 -21.91 16 10 N -0.70 -22.91 5.12 -438.53 -2.24 -25.16 16 11 C 0.12 4.22 3.29 46.39 0.15 4.37 16 12 H 0.11 4.11 7.54 -2.38 -0.02 4.09 16 13 C 0.16 7.12 5.18 86.86 0.45 7.57 16 14 N -0.61 -26.62 3.39 -691.99 -2.35 -28.97 16 15 C -0.23 -11.51 10.27 84.03 0.86 -10.64 16 16 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.00 5.49 84.86 0.47 -2.54 16 18 N -0.95 -53.47 10.09 21.65 0.22 -53.25 16 19 Si 0.98 42.72 29.55 68.60 2.03 44.75 16 20 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 C 0.13 4.16 6.29 86.73 0.55 4.70 16 24 C 0.13 3.74 3.96 46.18 0.18 3.92 16 25 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 26 N -0.28 -7.94 2.37 -321.51 -0.76 -8.70 16 27 C -0.03 -0.82 9.37 83.49 0.78 -0.04 16 28 C -0.05 -1.35 12.05 83.73 1.01 -0.34 16 29 N -0.29 -8.36 12.41 -58.25 -0.72 -9.08 16 30 N -0.11 -3.26 12.30 37.02 0.46 -2.80 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.07 2.13 5.96 -2.39 -0.01 2.12 16 34 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.14 3.22 6.58 -2.91 -0.02 3.20 16 37 H 0.40 12.23 4.99 -92.71 -0.46 11.77 16 38 H 0.00 -0.04 7.60 -2.38 -0.02 -0.06 16 39 H 0.07 4.11 5.87 -2.39 -0.01 4.10 16 40 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.65 7.17 -2.38 -0.02 1.63 16 43 H 0.19 5.63 7.71 -2.91 -0.02 5.61 16 44 H 0.22 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -65.79 362.21 2.74 -63.05 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.59 Total: 33.20 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 7.60 Total: 21.92 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -7.43 Total: -141.01 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.79 2.74 -63.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685940887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.018 kcal (2) G-P(sol) polarization free energy of solvation -65.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds