Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 114.65103 * 2 1 4 4 N 1.49355 * 108.33158 * 121.10344 * 2 1 3 5 5 S 1.65597 * 120.00164 * 297.53130 * 4 2 1 6 6 O 1.42102 * 106.40573 * 293.54127 * 5 4 2 7 7 O 1.42108 * 106.40285 * 66.46127 * 5 4 2 8 8 N 1.65597 * 107.22086 * 179.97438 * 5 4 2 9 9 C 1.36936 * 119.99946 * 270.00259 * 8 5 4 10 10 H 1.07995 * 120.00364 * 326.35763 * 9 8 5 11 11 C 1.38810 * 119.99999 * 146.36039 * 9 8 5 12 12 N 1.31618 * 120.00242 * 156.59924 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 336.59951 * 11 9 8 14 14 H 1.48502 * 109.47248 * 95.44769 * 13 11 9 15 15 H 1.48507 * 109.47290 * 215.44623 * 13 11 9 16 16 H 1.48497 * 109.47334 * 335.44706 * 13 11 9 17 17 C 1.46500 * 120.00225 * 90.00337 * 8 5 4 18 18 C 1.47202 * 109.47245 * 94.78590 * 17 8 5 19 19 N 6.86971 * 107.36082 * 86.86682 * 2 1 3 20 20 C 1.76199 * 108.33378 * 238.89202 * 2 1 3 21 21 C 1.38233 * 119.99807 * 329.72437 * 20 2 1 22 22 C 1.38241 * 119.99589 * 179.78901 * 21 20 2 23 23 C 1.38236 * 119.99753 * 0.44178 * 22 21 20 24 24 C 1.38227 * 120.00457 * 359.81288 * 23 22 21 25 25 C 1.38233 * 119.99947 * 150.00406 * 20 2 1 26 26 H 1.09003 * 109.47231 * 300.00418 * 1 2 3 27 27 H 1.09005 * 109.46917 * 59.99995 * 1 2 3 28 28 H 1.08993 * 109.47078 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00183 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47216 * 214.79311 * 17 8 5 31 31 H 1.09005 * 109.46745 * 334.78824 * 17 8 5 32 32 H 1.07999 * 120.00325 * 0.02562 * 21 20 2 33 33 H 1.08004 * 119.99657 * 180.28152 * 22 21 20 34 34 H 1.08004 * 119.99402 * 179.83418 * 23 22 21 35 35 H 1.08001 * 120.00345 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00223 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.4067 1.2915 0.0000 4 7 2.2837 -0.7324 1.2139 5 16 1.9149 -0.1573 2.7224 6 8 2.6097 1.0743 2.8633 7 8 0.5058 -0.2751 2.8633 8 7 2.5830 -1.2002 3.8216 9 6 1.8607 -2.2712 4.2758 10 1 0.7905 -2.1895 4.3948 11 6 2.5042 -3.4621 4.5834 12 7 1.9504 -4.3119 5.4221 13 14 4.1562 -3.8587 3.8068 14 1 5.2470 -3.4536 4.7296 15 1 4.2438 -5.3183 3.5475 16 1 4.2914 -3.1194 2.5261 17 6 3.9467 -0.9770 4.3081 18 6 3.8997 -0.2239 5.5720 19 7 3.8638 0.3584 6.5470 20 6 2.3682 -0.8641 -1.4320 21 6 1.6042 -1.8879 -1.9603 22 6 2.0370 -2.5629 -3.0864 23 6 3.2381 -2.2202 -3.6787 24 6 4.0046 -1.2000 -3.1473 25 6 3.5698 -0.5222 -2.0237 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.3999 -5.1443 5.6367 30 1 4.4345 -1.9373 4.4752 31 1 4.5083 -0.4083 3.5669 32 1 0.6674 -2.1578 -1.4956 33 1 1.4379 -3.3597 -3.5019 34 1 3.5775 -2.7494 -4.5569 35 1 4.9432 -0.9326 -3.6098 36 1 4.1687 0.2749 -1.6086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = 19.190364 kcal Electronic energy + Delta-G solvation = -25953.126419 eV Core-core repulsion = 22080.432292 eV Total energy + Delta-G solvation = -3872.694128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.29999 -37.04919 -36.26153 -35.87600 -35.03849 -34.72789 -32.43443 -32.17443 -31.57396 -31.32634 -29.16215 -27.77678 -24.38456 -23.39342 -22.92877 -19.74953 -18.67310 -18.46365 -17.55403 -17.29109 -16.54853 -16.26745 -15.93392 -15.83250 -15.65620 -14.79528 -14.63821 -14.13542 -13.82386 -13.77968 -13.58305 -13.25337 -13.22248 -13.08993 -12.93569 -12.60723 -12.40032 -12.05408 -11.96567 -11.64737 -11.49898 -11.21065 -11.05273 -10.98305 -10.93250 -10.87730 -10.71741 -10.48114 -10.15986 -9.66026 -9.54837 -9.44849 -9.34787 -9.27309 -8.59950 -6.93033 -4.19767 -0.42880 0.58356 1.06224 1.72740 2.85035 2.94596 3.04790 3.18809 3.24616 3.31223 3.43314 3.77441 3.83867 4.06363 4.19523 4.44900 4.57423 4.62926 4.67120 4.71186 4.88501 4.96604 5.07964 5.21698 5.42085 5.51499 5.57448 5.66503 5.71125 5.81804 5.87416 5.90762 5.98565 6.10392 6.51638 6.57427 7.14081 7.94183 8.16198 8.54207 8.59124 10.11279 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005015 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.705531 B = 5581.574109 C = 6384.792428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.359 3.641 3 O -0.939 6.939 4 N -1.487 6.487 5 S 2.639 3.361 6 O -1.010 7.010 7 O -1.003 7.003 8 N -0.807 5.807 9 C -0.215 4.215 10 H 0.135 0.865 11 C 0.056 3.944 12 N -0.802 5.802 13 Si 0.862 3.138 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.231 1.231 17 C 0.210 3.790 18 C 0.218 3.782 19 N -0.437 5.437 20 C -0.557 4.557 21 C -0.039 4.039 22 C -0.135 4.135 23 C -0.073 4.073 24 C -0.135 4.135 25 C -0.020 4.020 26 H 0.144 0.856 27 H 0.121 0.879 28 H 0.139 0.861 29 H 0.288 0.712 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -1.834 -18.658 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.551 3.449 3 O -0.924 6.924 4 N -1.502 6.502 5 S 2.664 3.336 6 O -0.993 6.993 7 O -0.986 6.986 8 N -0.633 5.633 9 C -0.369 4.369 10 H 0.152 0.848 11 C -0.162 4.162 12 N -0.438 5.438 13 Si 0.687 3.313 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.153 1.153 17 C 0.080 3.920 18 C -0.102 4.102 19 N -0.116 5.116 20 C -0.652 4.652 21 C -0.058 4.058 22 C -0.154 4.154 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.040 4.040 26 H 0.162 0.838 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.614 0.311 -17.177 17.255 hybrid contribution 0.343 -1.169 -1.103 1.643 sum 1.956 -0.858 -18.280 18.404 Atomic orbital electron populations 1.30472 1.24932 1.12559 1.11773 1.12287 0.79011 0.76077 0.77564 1.93521 1.72672 1.40549 1.85620 1.77968 1.71822 1.73739 1.26622 1.09181 0.75215 0.75669 0.73537 1.93516 1.74349 1.45818 1.85598 1.93464 1.31898 1.87455 1.85832 1.53947 1.21446 1.43710 1.44201 1.19698 0.95817 0.89318 1.32076 0.84754 1.25844 1.00032 0.95010 0.95281 1.69823 1.39191 1.09541 1.25243 0.87070 0.82028 0.79414 0.82819 1.18909 1.20214 1.15328 1.18821 0.86787 0.98589 0.87839 1.29585 0.93119 0.92901 0.94630 1.81016 1.07628 1.10742 1.12179 1.29044 1.05896 1.12479 1.17825 1.21006 0.98319 0.92001 0.94500 1.21267 0.97193 1.00501 0.96445 1.21469 0.93803 0.95271 0.98550 1.21297 1.00549 0.96868 0.96711 1.20956 0.92729 0.97013 0.93287 0.83787 0.85999 0.84250 0.90150 0.88166 0.85995 0.84458 0.84845 0.85189 0.84846 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -8.50 9.54 101.05 0.96 -7.54 16 2 S 2.36 40.18 4.34 -98.05 -0.43 39.75 16 3 O -0.94 -19.19 16.84 -39.59 -0.67 -19.85 16 4 N -1.49 -30.81 10.92 60.35 0.66 -30.15 16 5 S 2.64 63.60 5.69 -98.05 -0.56 63.04 16 6 O -1.01 -26.36 16.47 -60.95 -1.00 -27.36 16 7 O -1.00 -24.78 14.81 -57.17 -0.85 -25.63 16 8 N -0.81 -19.06 2.56 -62.77 -0.16 -19.22 16 9 C -0.21 -5.30 9.59 -15.06 -0.14 -5.45 16 10 H 0.14 3.54 7.53 -52.49 -0.40 3.14 16 11 C 0.06 1.32 5.32 -17.43 -0.09 1.23 16 12 N -0.80 -19.63 13.97 55.49 0.78 -18.85 16 13 Si 0.86 17.30 24.94 -169.99 -4.24 13.06 16 14 H -0.26 -4.87 6.68 56.52 0.38 -4.50 16 15 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.23 -4.54 7.11 56.52 0.40 -4.13 16 17 C 0.21 4.37 4.78 -6.83 -0.03 4.34 16 18 C 0.22 4.83 15.73 -20.75 -0.33 4.50 16 19 N -0.44 -10.12 18.54 42.16 0.78 -9.33 16 20 C -0.56 -7.44 5.95 -39.59 -0.24 -7.67 16 21 C -0.04 -0.41 9.46 -39.58 -0.37 -0.79 16 22 C -0.14 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.07 -0.60 10.05 -39.59 -0.40 -1.00 16 24 C -0.14 -1.29 10.05 -39.59 -0.40 -1.69 16 25 C -0.02 -0.25 9.57 -39.58 -0.38 -0.63 16 26 H 0.14 2.22 6.69 -51.92 -0.35 1.88 16 27 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.14 1.50 7.35 -51.93 -0.38 1.12 16 29 H 0.29 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.10 1.95 2.64 -51.93 -0.14 1.82 16 31 H 0.12 2.21 7.62 -51.93 -0.40 1.81 16 32 H 0.14 1.09 6.92 -52.49 -0.36 0.73 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.75 7.75 -52.49 -0.41 1.34 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -34.07 337.17 -5.69 -39.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.28 Total: 5.98 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.81 Total: -16.27 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: 2.05 Total: -77.56 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -2.52 Total: -72.84 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -4.24 Total: 13.06 kcal Atomic # 16 Polarization: 103.77 SS G_CDS: -0.98 Total: 102.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.07 -5.69 -39.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.950 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds