Wall clock time and date at job start Tue Mar 31 2020 05:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 O 1.45203 * 109.47185 * 119.99904 * 2 1 3 5 5 C 1.34228 * 117.00286 * 149.99996 * 4 2 1 6 6 O 1.20825 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00125 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47123 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47239 * 179.97438 * 8 7 5 10 10 C 1.34778 * 120.00209 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99918 * 5.41633 * 10 9 8 12 12 N 1.34774 * 119.99913 * 185.40689 * 10 9 8 13 13 C 1.46963 * 120.59350 * 186.00635 * 12 10 9 14 14 C 1.53370 * 108.63859 * 235.20885 * 13 12 10 15 15 H 1.08999 * 109.60815 * 70.31725 * 14 13 12 16 16 C 1.52994 * 109.75176 * 190.74860 * 14 13 12 17 17 N 1.46965 * 108.63219 * 310.57860 * 14 13 12 18 18 C 1.36935 * 120.59153 * 235.20056 * 17 14 13 19 19 H 1.08008 * 120.00050 * 127.10715 * 18 17 14 20 20 C 1.38811 * 120.00243 * 307.10798 * 18 17 14 21 21 N 1.31623 * 119.99812 * 336.89105 * 20 18 17 22 22 Si 1.86805 * 120.00356 * 156.89334 * 20 18 17 23 23 H 1.48501 * 109.47115 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46567 * 299.99756 * 22 20 18 25 25 H 1.48499 * 109.46900 * 59.99583 * 22 20 18 26 26 C 1.46958 * 118.81480 * 55.47815 * 17 14 13 27 27 H 1.08997 * 109.61603 * 64.26306 * 26 17 14 28 28 C 1.53004 * 109.61117 * 184.77582 * 26 17 14 29 29 C 1.46965 * 120.59295 * 5.98940 * 12 10 9 30 30 H 1.09002 * 109.46858 * 300.00566 * 1 2 3 31 31 H 1.09002 * 109.46697 * 59.99902 * 1 2 3 32 32 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46858 * 239.99434 * 2 1 3 34 34 H 1.08994 * 109.47359 * 59.99751 * 3 2 1 35 35 H 1.08998 * 109.47307 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46852 * 299.99490 * 3 2 1 37 37 H 1.09006 * 109.47308 * 59.99890 * 7 5 4 38 38 H 1.09001 * 109.46850 * 299.99763 * 7 5 4 39 39 H 1.08994 * 109.47253 * 59.99765 * 8 7 5 40 40 H 1.09001 * 109.47250 * 299.99745 * 8 7 5 41 41 H 0.97004 * 119.99570 * 0.02562 * 9 8 7 42 42 H 1.09001 * 109.60693 * 115.46407 * 13 12 10 43 43 H 1.08996 * 109.74823 * 355.04019 * 13 12 10 44 44 H 1.09004 * 109.47371 * 186.99235 * 16 14 13 45 45 H 1.08994 * 109.47141 * 306.99182 * 16 14 13 46 46 H 1.08999 * 109.47104 * 66.99203 * 16 14 13 47 47 H 0.97006 * 119.99998 * 175.07082 * 21 20 18 48 48 H 1.09001 * 109.46732 * 63.51504 * 28 26 17 49 49 H 1.08996 * 109.47064 * 183.50998 * 28 26 17 50 50 H 1.08998 * 109.47112 * 303.51358 * 28 26 17 51 51 H 1.09001 * 109.61165 * 244.53052 * 29 12 10 52 52 H 1.08993 * 109.61426 * 4.87691 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 3.1937 -1.3170 1.0852 6 8 3.8015 -1.2997 0.0411 7 6 3.7594 -2.0496 2.2744 8 6 5.1017 -2.6781 1.8949 9 7 5.6520 -3.3899 3.0511 10 6 6.8361 -4.0258 2.9501 11 8 7.4941 -3.9273 1.9324 12 7 7.2907 -4.7706 3.9771 13 6 8.6356 -5.3618 3.9346 14 6 8.5132 -6.8745 4.1556 15 1 8.0525 -7.3358 3.2821 16 6 9.9007 -7.4777 4.3830 17 7 7.6732 -7.1098 5.3383 18 6 8.1351 -7.8667 6.3818 19 1 8.1098 -7.4731 7.3873 20 6 8.6359 -9.1400 6.1474 21 7 8.2741 -9.8011 5.0683 22 14 9.8234 -9.9151 7.3634 23 1 10.2080 -11.2677 6.8860 24 1 11.0374 -9.0676 7.4783 25 1 9.1693 -10.0258 8.6919 26 6 6.3263 -6.5234 5.3785 27 1 5.7134 -6.9602 4.5900 28 6 5.6873 -6.7974 6.7415 29 6 6.4507 -5.0059 5.1599 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9562 -0.8901 37 1 3.0662 -2.8325 2.5824 38 1 3.9053 -1.3493 3.0968 39 1 5.7951 -1.8957 1.5867 40 1 4.9555 -3.3785 1.0726 41 1 5.1638 -3.4040 3.8892 42 1 9.2518 -4.9258 4.7209 43 1 9.0917 -5.1697 2.9635 44 1 9.8236 -8.5645 4.4157 45 1 10.5623 -7.1848 3.5678 46 1 10.3049 -7.1136 5.3276 47 1 8.6779 -10.6600 4.8675 48 1 6.2652 -6.2996 7.5202 49 1 4.6662 -6.4163 6.7472 50 1 5.6755 -7.8712 6.9279 51 1 6.9114 -4.5448 6.0335 52 1 5.4622 -4.5762 4.9979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:58 Heat of formation + Delta-G solvation = -86.732637 kcal Electronic energy + Delta-G solvation = -30783.313896 eV Core-core repulsion = 26591.164717 eV Total energy + Delta-G solvation = -4192.149179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.92320 -39.92971 -37.62868 -37.21575 -35.15897 -34.22604 -33.58995 -32.77526 -31.63036 -30.63416 -27.75381 -27.74388 -26.19167 -25.89586 -24.59459 -23.42251 -22.03255 -20.84223 -20.38127 -20.22015 -19.20558 -18.08942 -17.78437 -16.85528 -16.53230 -16.13604 -15.79495 -15.39212 -15.01056 -14.74963 -14.46541 -14.33935 -14.07615 -13.97959 -13.75203 -13.64206 -13.41840 -12.96870 -12.76260 -12.66732 -12.54832 -12.25890 -12.16515 -11.96748 -11.74366 -11.60745 -11.49432 -11.37201 -11.34579 -10.97612 -10.90056 -10.83420 -10.73316 -10.56481 -10.47587 -10.30602 -10.04407 -9.89946 -9.79796 -9.54827 -9.00042 -8.28996 -7.89673 -6.44761 -5.75583 -3.58333 1.90045 2.16967 3.06349 3.31475 3.39024 3.41537 3.56113 4.12990 4.33441 4.34151 4.41744 4.45583 4.54418 4.69647 4.69878 5.04257 5.07444 5.13255 5.23074 5.25772 5.30346 5.39412 5.58426 5.64044 5.66223 5.68126 5.69574 5.75600 5.90095 6.03856 6.16246 6.18596 6.28878 6.32008 6.36555 6.47654 6.56788 6.61850 6.79796 6.89293 6.95274 7.03075 7.19656 7.33775 7.44185 7.48243 7.68567 7.82500 8.28673 8.56262 8.93746 9.14455 9.68492 10.45832 11.11720 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.002031 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.826787 B =13784.830502 C =14318.687606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.171 4.171 4 O -0.354 6.354 5 C 0.468 3.532 6 O -0.500 6.500 7 C -0.127 4.127 8 C 0.152 3.848 9 N -0.754 5.754 10 C 0.706 3.294 11 O -0.597 6.597 12 N -0.615 5.615 13 C 0.112 3.888 14 C 0.182 3.818 15 H 0.031 0.969 16 C -0.144 4.144 17 N -0.575 5.575 18 C -0.267 4.267 19 H 0.053 0.947 20 C 0.039 3.961 21 N -0.869 5.869 22 Si 0.880 3.120 23 H -0.290 1.290 24 H -0.278 1.278 25 H -0.279 1.279 26 C 0.156 3.844 27 H 0.029 0.971 28 C -0.128 4.128 29 C 0.099 3.901 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.395 0.605 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.053 0.947 47 H 0.255 0.745 48 H 0.051 0.949 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 18.235 -4.170 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.228 4.228 4 O -0.272 6.272 5 C 0.310 3.690 6 O -0.387 6.387 7 C -0.165 4.165 8 C 0.027 3.973 9 N -0.413 5.413 10 C 0.407 3.593 11 O -0.476 6.476 12 N -0.350 5.350 13 C -0.012 4.012 14 C 0.075 3.925 15 H 0.049 0.951 16 C -0.202 4.202 17 N -0.299 5.299 18 C -0.396 4.396 19 H 0.071 0.929 20 C -0.164 4.164 21 N -0.508 5.508 22 Si 0.708 3.292 23 H -0.216 1.216 24 H -0.204 1.204 25 H -0.205 1.205 26 C 0.049 3.951 27 H 0.046 0.954 28 C -0.186 4.186 29 C -0.026 4.026 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.415 18.101 -5.310 23.148 hybrid contribution 0.341 -0.446 0.831 1.003 sum -13.074 17.655 -4.479 22.421 Atomic orbital electron populations 1.21896 0.92281 1.03305 1.03212 1.22766 0.95031 0.92741 0.87014 1.22215 1.02277 0.95157 1.03136 1.86558 1.36567 1.62692 1.41341 1.23379 0.79264 0.76484 0.89883 1.90715 1.59122 1.58198 1.30698 1.21519 0.98232 1.01112 0.95636 1.20789 0.91642 0.96595 0.88288 1.45133 1.23006 1.58085 1.15106 1.15799 0.80893 0.78903 0.83678 1.90884 1.58400 1.68448 1.29835 1.47205 1.17826 1.51954 1.18014 1.22348 0.80928 0.96393 1.01523 1.20611 0.92272 0.89195 0.90385 0.95095 1.22007 0.94396 1.04827 0.98983 1.43968 1.09124 1.58620 1.18234 1.18594 1.39314 0.93382 0.88316 0.92928 1.25497 0.99207 0.95233 0.96464 1.70218 1.39317 1.13337 1.27926 0.86784 0.82354 0.78375 0.81724 1.21584 1.20382 1.20459 1.20929 0.89011 0.89180 0.95992 0.95359 1.21670 0.97107 1.03193 0.96638 1.22435 0.92636 1.00074 0.87440 0.91322 0.90327 0.91577 0.89574 0.91476 0.91851 0.90640 0.86811 0.86915 0.90718 0.90791 0.76848 0.92338 0.90198 0.89227 0.95624 0.92830 0.93460 0.93020 0.94583 0.91073 0.91777 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.57 37.16 0.36 -0.43 16 2 C 0.08 0.60 3.18 -26.73 -0.09 0.52 16 3 C -0.17 -1.11 9.55 37.16 0.35 -0.76 16 4 O -0.35 -3.20 9.88 -39.25 -0.39 -3.59 16 5 C 0.47 4.75 7.93 36.00 0.29 5.04 16 6 O -0.50 -6.68 15.20 -18.75 -0.29 -6.96 16 7 C -0.13 -1.01 5.92 -27.89 -0.17 -1.18 16 8 C 0.15 1.83 4.97 -4.04 -0.02 1.81 16 9 N -0.75 -10.01 5.42 -65.23 -0.35 -10.37 16 10 C 0.71 12.88 8.29 -86.92 -0.72 12.16 16 11 O -0.60 -13.15 15.77 5.29 0.08 -13.06 16 12 N -0.61 -11.28 2.95 -177.94 -0.52 -11.80 16 13 C 0.11 2.25 5.91 -3.60 -0.02 2.23 16 14 C 0.18 4.15 3.26 -67.49 -0.22 3.93 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.14 -3.23 7.83 37.15 0.29 -2.94 16 17 N -0.58 -13.36 2.75 -156.76 -0.43 -13.79 16 18 C -0.27 -6.66 6.57 -15.06 -0.10 -6.76 16 19 H 0.05 1.33 7.29 -52.48 -0.38 0.95 16 20 C 0.04 1.00 3.14 -17.43 -0.05 0.95 16 21 N -0.87 -23.86 11.82 55.49 0.66 -23.20 16 22 Si 0.88 20.22 29.62 -169.99 -5.03 15.18 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.16 3.08 3.67 -67.25 -0.25 2.83 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 C -0.13 -2.26 8.19 37.16 0.30 -1.96 16 29 C 0.10 1.60 5.85 -3.36 -0.02 1.58 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.75 7.16 -51.93 -0.37 0.38 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.40 4.10 6.06 -40.82 -0.25 3.85 16 42 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 43 H 0.08 1.64 7.00 -51.93 -0.36 1.28 16 44 H 0.09 2.23 4.90 -51.93 -0.25 1.98 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 1.20 7.56 -51.93 -0.39 0.81 16 47 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 48 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.07 1.45 7.54 -51.93 -0.39 1.06 16 51 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 52 H 0.06 0.76 5.72 -51.93 -0.30 0.46 16 LS Contribution 407.94 15.07 6.15 6.15 Total: -1.00 -32.33 407.94 -9.18 -41.51 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.99 Total: 2.92 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -0.06 Total: 17.02 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.65 Total: -59.16 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.59 Total: -23.62 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.33 -9.18 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.221 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds