Wall clock time and date at job start Tue Mar 31 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 O 1.45195 * 109.46866 * 119.99945 * 2 1 3 5 5 C 1.34234 * 116.99764 * 90.00327 * 4 2 1 6 6 O 1.20822 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99778 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47021 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.47324 * 180.02562 * 8 7 5 10 10 C 1.34770 * 120.00363 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99583 * 354.79126 * 10 9 8 12 12 N 1.34779 * 120.00289 * 174.78466 * 10 9 8 13 13 C 1.46961 * 120.59625 * 184.91995 * 12 10 9 14 14 C 1.53810 * 108.39813 * 124.75755 * 13 12 10 15 15 H 1.09004 * 109.67050 * 169.38676 * 14 13 12 16 16 C 1.52996 * 109.74306 * 289.84597 * 14 13 12 17 17 N 1.46963 * 108.57855 * 49.63732 * 14 13 12 18 18 C 1.36944 * 120.59319 * 124.66437 * 17 14 13 19 19 H 1.07996 * 120.00456 * 303.55090 * 18 17 14 20 20 C 1.38813 * 119.99548 * 123.54223 * 18 17 14 21 21 N 1.31616 * 119.99800 * 156.08082 * 20 18 17 22 22 Si 1.86799 * 120.00392 * 336.07970 * 20 18 17 23 23 H 1.48499 * 109.47107 * 93.67437 * 22 20 18 24 24 H 1.48496 * 109.47144 * 213.67702 * 22 20 18 25 25 H 1.48498 * 109.46988 * 333.67252 * 22 20 18 26 26 C 1.46955 * 118.81468 * 304.64596 * 17 14 13 27 27 H 1.09000 * 109.75057 * 295.39913 * 26 17 14 28 28 C 1.53001 * 109.61177 * 174.97054 * 26 17 14 29 29 C 1.46963 * 120.59099 * 5.19972 * 12 10 9 30 30 H 1.08998 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47048 * 299.99726 * 1 2 3 32 32 H 1.09003 * 109.46773 * 60.00391 * 1 2 3 33 33 H 1.09003 * 109.46868 * 240.00072 * 2 1 3 34 34 H 1.08993 * 109.46999 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47287 * 300.00173 * 3 2 1 36 36 H 1.08998 * 109.46788 * 59.99825 * 3 2 1 37 37 H 1.09003 * 109.47059 * 299.99688 * 7 5 4 38 38 H 1.08991 * 109.47162 * 59.99657 * 7 5 4 39 39 H 1.09003 * 109.46657 * 299.99577 * 8 7 5 40 40 H 1.08991 * 109.47724 * 59.99644 * 8 7 5 41 41 H 0.97003 * 119.99433 * 359.97438 * 9 8 7 42 42 H 1.08991 * 109.60845 * 244.54242 * 13 12 10 43 43 H 1.09001 * 109.60957 * 5.05319 * 13 12 10 44 44 H 1.09004 * 109.47620 * 179.15700 * 16 14 13 45 45 H 1.09000 * 109.47485 * 299.15921 * 16 14 13 46 46 H 1.09008 * 109.46900 * 59.16176 * 16 14 13 47 47 H 0.96998 * 120.00528 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.47141 * 301.95316 * 28 26 17 49 49 H 1.08994 * 109.47293 * 61.95761 * 28 26 17 50 50 H 1.09005 * 109.46784 * 181.95975 * 28 26 17 51 51 H 1.08999 * 109.61176 * 354.94660 * 29 12 10 52 52 H 1.08995 * 109.60973 * 115.45629 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0851 6 8 1.9983 -2.5748 0.0410 7 6 2.7193 -2.7852 2.2743 8 6 2.8644 -4.2602 1.8947 9 7 3.3520 -5.0163 3.0509 10 6 3.5559 -6.3447 2.9501 11 8 3.2463 -6.9316 1.9312 12 7 4.1030 -7.0225 3.9786 13 6 4.4304 -8.4489 3.8446 14 6 5.9169 -8.6404 4.1899 15 1 6.1384 -9.7038 4.2814 16 6 6.7861 -8.0277 3.0900 17 7 6.1912 -7.9677 5.4675 18 6 6.7471 -8.6564 6.5125 19 1 6.2661 -9.5470 6.8891 20 6 7.9288 -8.2098 7.0877 21 7 8.2231 -8.5397 8.3274 22 14 9.1015 -7.1405 6.1023 23 1 8.8115 -5.7093 6.3718 24 1 10.5001 -7.4452 6.4978 25 1 8.9253 -7.4172 4.6540 26 6 5.8588 -6.5427 5.6033 27 1 6.4737 -5.9545 4.9223 28 6 6.1116 -6.0914 7.0432 29 6 4.3773 -6.3499 5.2561 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.6884 -2.3926 2.5822 38 1 2.0105 -2.6893 3.0967 39 1 1.8955 -4.6530 1.5865 40 1 3.5734 -4.3558 1.0724 41 1 3.5281 -4.5608 3.8890 42 1 3.8149 -9.0314 4.5300 43 1 4.2468 -8.7717 2.8198 44 1 7.8382 -8.1526 3.3463 45 1 6.5810 -8.5282 2.1436 46 1 6.5586 -6.9658 2.9963 47 1 9.0487 -8.2273 8.7295 48 1 5.5149 -6.6981 7.7243 49 1 7.1685 -6.2111 7.2812 50 1 5.8315 -5.0434 7.1500 51 1 4.1588 -5.2860 5.1637 52 1 3.7581 -6.7863 6.0397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:03 Heat of formation + Delta-G solvation = -83.776584 kcal Electronic energy + Delta-G solvation = -31179.716258 eV Core-core repulsion = 26987.695263 eV Total energy + Delta-G solvation = -4192.020995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.96159 -40.10853 -37.83102 -37.29766 -35.25638 -34.14718 -33.62936 -32.91131 -31.64369 -30.92540 -28.35828 -27.76718 -26.47288 -25.94664 -24.53475 -23.31832 -22.14269 -21.24299 -20.86794 -20.22226 -18.66255 -18.15224 -18.05257 -16.89451 -16.57852 -16.48302 -15.92127 -15.54054 -15.11797 -14.88991 -14.65049 -14.38806 -14.12950 -13.99229 -13.78791 -13.56845 -13.41676 -13.16559 -12.78286 -12.74349 -12.60443 -12.44957 -12.27567 -12.19874 -12.16686 -11.83205 -11.62492 -11.55652 -11.37355 -11.29961 -11.04199 -11.00214 -10.77263 -10.59944 -10.57515 -10.27004 -10.04129 -9.88361 -9.65235 -9.59212 -9.08542 -8.53345 -8.10633 -6.47922 -6.11465 -3.71261 1.86316 2.12958 2.97225 3.27351 3.42191 3.47013 3.50194 4.03466 4.27786 4.31634 4.43074 4.44413 4.49357 4.65492 4.67298 4.82950 5.00733 5.05395 5.15225 5.23671 5.27961 5.36497 5.47221 5.56268 5.56952 5.60594 5.63007 5.67218 5.76076 5.84212 5.98056 6.05474 6.12997 6.20906 6.22886 6.31068 6.39231 6.47337 6.50759 6.58197 6.70217 6.84462 6.91865 7.06918 7.25038 7.31606 7.40520 8.01342 8.17951 8.49342 8.83500 8.95938 9.59137 10.16773 11.00071 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.002378 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.013720 B =11770.308183 C =12461.293228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.354 6.354 5 C 0.468 3.532 6 O -0.501 6.501 7 C -0.128 4.128 8 C 0.152 3.848 9 N -0.754 5.754 10 C 0.708 3.292 11 O -0.596 6.596 12 N -0.614 5.614 13 C 0.120 3.880 14 C 0.149 3.851 15 H 0.083 0.917 16 C -0.162 4.162 17 N -0.590 5.590 18 C -0.280 4.280 19 H 0.069 0.931 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.862 3.138 23 H -0.283 1.283 24 H -0.302 1.302 25 H -0.257 1.257 26 C 0.154 3.846 27 H 0.028 0.972 28 C -0.141 4.141 29 C 0.101 3.899 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.396 0.604 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.264 0.736 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.033 0.967 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.310 17.821 -11.057 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.271 6.271 5 C 0.310 3.690 6 O -0.388 6.388 7 C -0.166 4.166 8 C 0.027 3.973 9 N -0.414 5.414 10 C 0.409 3.591 11 O -0.475 6.475 12 N -0.350 5.350 13 C -0.005 4.005 14 C 0.042 3.958 15 H 0.101 0.899 16 C -0.221 4.221 17 N -0.314 5.314 18 C -0.409 4.409 19 H 0.087 0.913 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.690 3.310 23 H -0.210 1.210 24 H -0.229 1.229 25 H -0.181 1.181 26 C 0.047 3.953 27 H 0.046 0.954 28 C -0.199 4.199 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.233 0.767 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.052 0.948 51 H 0.079 0.921 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.479 17.216 -11.979 24.405 hybrid contribution 0.890 1.027 -0.079 1.361 sum -11.588 18.243 -12.058 24.749 Atomic orbital electron populations 1.22219 0.94191 1.03218 1.03166 1.22770 0.94697 0.93098 0.86973 1.21897 1.02210 0.93367 1.03244 1.86561 1.77057 1.22146 1.41355 1.23365 0.74413 0.81334 0.89848 1.90711 1.47480 1.69904 1.30701 1.21523 1.04747 0.94631 0.95699 1.20789 1.01311 0.86965 0.88190 1.45164 1.73598 1.07371 1.15250 1.15754 0.78611 0.81078 0.83646 1.90886 1.58223 1.68042 1.30390 1.47153 1.64146 1.11416 1.12277 1.22184 0.97566 0.78836 1.01873 1.21249 0.90596 0.97446 0.86468 0.89909 1.22299 1.01193 1.00481 0.98146 1.44248 1.72224 1.05532 1.09412 1.18447 1.03374 1.11008 1.08044 0.91341 1.25924 0.96707 0.96206 0.95203 1.69924 1.24901 1.46034 1.11538 0.87303 0.80481 0.80236 0.82960 1.20999 1.22903 1.18134 1.20979 0.90870 0.87525 0.95927 0.95389 1.21994 1.04353 0.97605 0.95936 1.22321 0.99808 0.95069 0.85181 0.91853 0.91450 0.90624 0.89587 0.91592 0.90306 0.91295 0.86818 0.86850 0.90672 0.90805 0.76735 0.91885 0.89740 0.92299 0.93859 0.93996 0.92591 0.91220 0.90872 0.94786 0.92077 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.55 37.16 0.35 -0.74 16 2 C 0.08 0.59 3.18 -26.73 -0.09 0.51 16 3 C -0.15 -0.78 9.57 37.16 0.36 -0.42 16 4 O -0.35 -3.17 9.88 -39.27 -0.39 -3.56 16 5 C 0.47 4.66 7.93 36.01 0.29 4.95 16 6 O -0.50 -6.53 15.20 -18.75 -0.28 -6.81 16 7 C -0.13 -1.00 5.93 -27.88 -0.17 -1.16 16 8 C 0.15 1.76 4.97 -4.04 -0.02 1.74 16 9 N -0.75 -9.58 5.47 -65.23 -0.36 -9.94 16 10 C 0.71 12.02 8.29 -86.92 -0.72 11.30 16 11 O -0.60 -12.19 15.78 5.29 0.08 -12.10 16 12 N -0.61 -10.38 2.58 -177.95 -0.46 -10.84 16 13 C 0.12 2.12 5.99 -3.37 -0.02 2.10 16 14 C 0.15 2.92 3.32 -67.26 -0.22 2.70 16 15 H 0.08 1.63 7.93 -51.93 -0.41 1.22 16 16 C -0.16 -3.10 9.12 37.16 0.34 -2.77 16 17 N -0.59 -12.82 1.83 -156.77 -0.29 -13.10 16 18 C -0.28 -7.16 8.67 -15.06 -0.13 -7.29 16 19 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 20 C 0.06 1.67 3.77 -17.43 -0.07 1.60 16 21 N -0.89 -24.96 13.97 55.49 0.78 -24.19 16 22 Si 0.86 20.73 25.27 -169.99 -4.30 16.44 16 23 H -0.28 -6.62 6.62 56.52 0.37 -6.25 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.26 -6.10 5.03 56.52 0.28 -5.81 16 26 C 0.15 2.96 2.10 -67.49 -0.14 2.82 16 27 H 0.03 0.57 7.05 -51.93 -0.37 0.20 16 28 C -0.14 -2.78 7.87 37.16 0.29 -2.49 16 29 C 0.10 1.59 5.90 -3.60 -0.02 1.57 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.73 7.16 -51.93 -0.37 0.36 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.40 4.03 5.92 -40.82 -0.24 3.79 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 44 H 0.06 1.22 6.09 -51.93 -0.32 0.90 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.04 0.82 7.02 -51.92 -0.36 0.45 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.07 1.45 7.83 -51.93 -0.41 1.05 16 49 H 0.07 1.66 3.34 -51.93 -0.17 1.49 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.75 5.55 -51.93 -0.29 0.46 16 52 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -32.25 400.04 -8.07 -40.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.92 Total: 3.35 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 0.03 Total: 14.41 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.33 Total: -58.07 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.59 Total: -22.48 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.30 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.25 -8.07 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.452 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds