Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47426 * 2 1 4 4 O 1.45203 * 109.47171 * 120.00421 * 2 1 3 5 5 C 1.34228 * 116.99895 * 89.99766 * 4 2 1 6 6 O 1.20829 * 120.00245 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99702 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47049 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.47326 * 180.02562 * 8 7 5 10 10 C 1.34771 * 120.00438 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99740 * 5.02148 * 10 9 8 12 12 N 1.34775 * 120.00389 * 185.02507 * 10 9 8 13 13 C 1.46962 * 120.59367 * 174.80919 * 12 10 9 14 14 C 1.53374 * 108.77314 * 235.15956 * 13 12 10 15 15 H 1.09003 * 109.60625 * 190.91766 * 14 13 12 16 16 C 1.53001 * 109.61098 * 70.40860 * 14 13 12 17 17 N 1.47046 * 108.59373 * 310.83477 * 14 13 12 18 18 C 1.36937 * 120.44792 * 235.04796 * 17 14 13 19 19 H 1.08000 * 120.00006 * 55.63391 * 18 17 14 20 20 C 1.38812 * 120.00065 * 235.62749 * 18 17 14 21 21 N 1.31625 * 119.99911 * 204.25215 * 20 18 17 22 22 Si 1.86795 * 119.99939 * 24.25372 * 20 18 17 23 23 H 1.48494 * 109.47445 * 94.69385 * 22 20 18 24 24 H 1.48500 * 109.47442 * 214.69903 * 22 20 18 25 25 H 1.48502 * 109.46993 * 334.69518 * 22 20 18 26 26 C 1.46955 * 118.95490 * 54.95601 * 17 14 13 27 27 H 1.09003 * 109.75633 * 64.69869 * 26 17 14 28 28 C 1.52996 * 109.61078 * 185.13005 * 26 17 14 29 29 C 1.46962 * 120.58999 * 354.83042 * 12 10 9 30 30 H 1.08996 * 109.47224 * 59.99542 * 1 2 3 31 31 H 1.09000 * 109.47592 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47097 * 299.99607 * 1 2 3 33 33 H 1.09004 * 109.47144 * 239.99851 * 2 1 3 34 34 H 1.09004 * 109.47256 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47293 * 300.00416 * 3 2 1 36 36 H 1.09006 * 109.46662 * 60.00127 * 3 2 1 37 37 H 1.09002 * 109.47197 * 60.00421 * 7 5 4 38 38 H 1.08998 * 109.47361 * 300.00015 * 7 5 4 39 39 H 1.08994 * 109.47524 * 59.99769 * 8 7 5 40 40 H 1.09005 * 109.46699 * 299.99990 * 8 7 5 41 41 H 0.97006 * 119.99453 * 0.02562 * 9 8 7 42 42 H 1.08999 * 109.60947 * 354.98736 * 13 12 10 43 43 H 1.09003 * 109.61213 * 115.33241 * 13 12 10 44 44 H 1.09001 * 109.46930 * 59.99776 * 16 14 13 45 45 H 1.09003 * 109.47268 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.46725 * 299.99741 * 16 14 13 47 47 H 0.97000 * 119.99562 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.47906 * 179.14905 * 28 26 17 49 49 H 1.09005 * 109.47233 * 299.14342 * 28 26 17 50 50 H 1.08998 * 109.47531 * 59.13808 * 28 26 17 51 51 H 1.09003 * 109.60789 * 244.49744 * 29 12 10 52 52 H 1.08993 * 109.61299 * 4.83399 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2170 -2.0076 1.0850 6 8 1.9981 -2.5748 0.0408 7 6 2.7193 -2.7853 2.2742 8 6 2.8643 -4.2604 1.8945 9 7 3.3519 -5.0165 3.0507 10 6 3.5567 -6.3447 2.9496 11 8 3.4249 -6.9002 1.8760 12 7 3.9076 -7.0574 4.0384 13 6 4.0236 -8.5208 3.9690 14 6 3.1264 -9.1387 5.0486 15 1 3.3448 -10.2026 5.1408 16 6 1.6572 -8.9436 4.6689 17 7 3.3968 -8.4628 6.3263 18 6 3.7528 -9.1869 7.4327 19 1 4.6053 -9.8488 7.3935 20 6 3.0181 -9.0701 8.6046 21 7 3.5775 -9.3500 9.7627 22 14 1.2355 -8.5159 8.5380 23 1 0.3477 -9.7059 8.5107 24 1 0.9270 -7.6955 9.7368 25 1 1.0145 -7.7054 7.3135 26 6 3.2808 -6.9995 6.3955 27 1 2.2463 -6.7032 6.2215 28 6 3.7289 -6.5136 7.7754 29 6 4.1807 -6.3849 5.3163 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 2.0104 -2.6895 3.0967 38 1 3.6884 -2.3928 2.5821 39 1 3.5732 -4.3559 1.0722 40 1 1.8953 -4.6531 1.5864 41 1 3.5274 -4.5611 3.8890 42 1 3.7044 -8.8669 2.9860 43 1 5.0590 -8.8143 4.1418 44 1 1.4613 -9.4299 3.7133 45 1 1.0217 -9.3839 5.4373 46 1 1.4419 -7.8783 4.5854 47 1 3.0639 -9.2687 10.5816 48 1 3.6563 -5.4269 7.8193 49 1 3.0880 -6.9516 8.5406 50 1 4.7614 -6.8162 7.9496 51 1 5.2267 -6.5265 5.5879 52 1 3.9682 -5.3200 5.2220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = -83.535118 kcal Electronic energy + Delta-G solvation = -31193.595861 eV Core-core repulsion = 27001.585337 eV Total energy + Delta-G solvation = -4192.010524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.96074 -40.11051 -37.84059 -37.29840 -35.25697 -34.15264 -33.63037 -32.93709 -31.63651 -30.92410 -28.36643 -27.76446 -26.47105 -25.94671 -24.53490 -23.30979 -22.14464 -21.26095 -20.86758 -20.22701 -18.67157 -18.15364 -18.05194 -16.89093 -16.59406 -16.44549 -15.92691 -15.56929 -15.06784 -14.86752 -14.76625 -14.36243 -14.13429 -13.91605 -13.76026 -13.62618 -13.41813 -13.16264 -12.78146 -12.74686 -12.59622 -12.39059 -12.20968 -12.19186 -12.15779 -11.84640 -11.65395 -11.51001 -11.37360 -11.31568 -11.00336 -10.91667 -10.77679 -10.73226 -10.59000 -10.20148 -10.11132 -9.99928 -9.76065 -9.52707 -9.08613 -8.52754 -8.09138 -6.47484 -6.12191 -3.69895 1.86313 2.12939 2.97157 3.30081 3.42209 3.47179 3.49112 4.03596 4.27808 4.31685 4.43279 4.44221 4.49401 4.65480 4.67335 4.83410 5.00721 5.05690 5.15466 5.23828 5.28211 5.36607 5.47819 5.56104 5.57343 5.60596 5.62653 5.68106 5.75892 5.86527 5.96889 6.04961 6.13012 6.20408 6.22797 6.32193 6.37485 6.46795 6.50212 6.56895 6.69434 6.80098 6.90877 7.05370 7.24163 7.29821 7.40525 8.01385 8.18082 8.48893 8.83518 8.96770 9.59766 10.17301 11.00133 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002391 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.638441 B =11706.626449 C =12334.268930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.354 6.354 5 C 0.468 3.532 6 O -0.501 6.501 7 C -0.128 4.128 8 C 0.152 3.848 9 N -0.754 5.754 10 C 0.708 3.292 11 O -0.597 6.597 12 N -0.614 5.614 13 C 0.120 3.880 14 C 0.148 3.852 15 H 0.084 0.916 16 C -0.157 4.157 17 N -0.590 5.590 18 C -0.281 4.281 19 H 0.069 0.931 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.861 3.139 23 H -0.291 1.291 24 H -0.297 1.297 25 H -0.256 1.256 26 C 0.153 3.847 27 H 0.036 0.964 28 C -0.136 4.136 29 C 0.100 3.900 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.396 0.604 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.264 0.736 48 H 0.034 0.966 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.071 0.929 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 19.736 -14.211 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.271 6.271 5 C 0.310 3.690 6 O -0.388 6.388 7 C -0.166 4.166 8 C 0.027 3.973 9 N -0.414 5.414 10 C 0.409 3.591 11 O -0.476 6.476 12 N -0.350 5.350 13 C -0.004 4.004 14 C 0.041 3.959 15 H 0.102 0.898 16 C -0.216 4.216 17 N -0.314 5.314 18 C -0.410 4.410 19 H 0.086 0.914 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.689 3.311 23 H -0.219 1.219 24 H -0.224 1.224 25 H -0.180 1.180 26 C 0.046 3.954 27 H 0.053 0.947 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.233 0.767 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.455 19.144 -15.127 24.523 hybrid contribution -1.132 0.594 0.570 1.400 sum -3.587 19.738 -14.557 24.786 Atomic orbital electron populations 1.22219 0.94180 1.03257 1.03180 1.22767 0.94719 0.93076 0.86953 1.21897 1.02159 0.93383 1.03260 1.86561 1.77045 1.22146 1.41371 1.23367 0.74428 0.81331 0.89838 1.90713 1.47486 1.69897 1.30709 1.21525 1.04722 0.94608 0.95741 1.20790 1.01207 0.86987 0.88269 1.45163 1.73548 1.07452 1.15208 1.15751 0.78126 0.80985 0.84213 1.90888 1.59950 1.70053 1.26669 1.47137 1.71449 1.07663 1.08704 1.22078 1.00247 0.77504 1.00580 1.21194 0.91621 0.96847 0.86192 0.89841 1.22174 0.98964 1.00803 0.99640 1.44240 1.80600 0.99633 1.06944 1.18457 1.09969 1.24500 0.88065 0.91354 1.25911 0.97153 0.95334 0.95600 1.69938 1.36123 1.48830 0.97530 0.87219 0.87690 0.78592 0.77619 1.21881 1.22441 1.17990 1.21087 0.95415 0.85828 0.93070 0.94673 1.21889 1.03686 0.97092 0.96691 1.22334 1.01166 0.94595 0.84358 0.90621 0.91835 0.91434 0.89592 0.91614 0.90303 0.91296 0.86815 0.86849 0.90657 0.90822 0.76730 0.89759 0.91921 0.93744 0.93182 0.93805 0.92612 0.94685 0.91372 0.91216 0.91104 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.55 37.15 0.35 -0.78 16 2 C 0.08 0.59 3.18 -26.74 -0.09 0.51 16 3 C -0.15 -0.76 9.57 37.16 0.36 -0.40 16 4 O -0.35 -3.16 9.88 -39.25 -0.39 -3.55 16 5 C 0.47 4.65 7.93 36.01 0.29 4.94 16 6 O -0.50 -6.52 15.20 -18.75 -0.29 -6.80 16 7 C -0.13 -0.99 5.93 -27.88 -0.17 -1.16 16 8 C 0.15 1.75 4.97 -4.04 -0.02 1.73 16 9 N -0.75 -9.55 5.47 -65.22 -0.36 -9.91 16 10 C 0.71 12.00 8.29 -86.92 -0.72 11.28 16 11 O -0.60 -12.17 15.78 5.28 0.08 -12.08 16 12 N -0.61 -10.36 2.62 -178.22 -0.47 -10.82 16 13 C 0.12 2.12 5.95 -3.60 -0.02 2.10 16 14 C 0.15 2.89 3.32 -67.44 -0.22 2.66 16 15 H 0.08 1.64 7.93 -51.93 -0.41 1.22 16 16 C -0.16 -2.97 9.15 37.16 0.34 -2.63 16 17 N -0.59 -12.80 1.85 -156.97 -0.29 -13.09 16 18 C -0.28 -7.20 8.71 -15.06 -0.13 -7.33 16 19 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 20 C 0.06 1.68 3.73 -17.43 -0.07 1.62 16 21 N -0.89 -25.02 13.97 55.49 0.78 -24.25 16 22 Si 0.86 20.82 25.22 -169.99 -4.29 16.53 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.26 -5.94 5.39 56.52 0.30 -5.63 16 26 C 0.15 2.93 2.04 -67.49 -0.14 2.79 16 27 H 0.04 0.72 6.04 -51.93 -0.31 0.41 16 28 C -0.14 -2.64 7.86 37.16 0.29 -2.35 16 29 C 0.10 1.57 5.91 -3.60 -0.02 1.55 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.72 7.16 -51.93 -0.37 0.35 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.40 4.02 5.92 -40.82 -0.24 3.77 16 42 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 1.00 7.79 -51.93 -0.40 0.60 16 46 H 0.04 0.85 7.01 -51.93 -0.36 0.49 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 1.53 3.51 -51.93 -0.18 1.34 16 50 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 51 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 52 H 0.06 0.74 5.55 -51.93 -0.29 0.45 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -32.48 401.70 -8.04 -40.52 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.92 Total: 2.87 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 0.04 Total: 14.53 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.34 Total: -58.08 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.59 Total: -22.44 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.29 Total: 16.53 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.48 -8.04 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.010 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds