Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.45055 * 2 1 4 4 C 1.53043 * 109.48830 * 119.94475 * 2 1 3 5 5 C 1.53184 * 109.34204 * 181.35578 * 4 2 1 6 6 N 1.46928 * 108.77550 * 305.38150 * 5 4 2 7 7 C 1.34779 * 120.63482 * 233.58746 * 6 5 4 8 8 O 1.21683 * 120.00518 * 185.10877 * 7 6 5 9 9 C 1.46380 * 119.99417 * 5.11166 * 7 6 5 10 10 H 1.07993 * 120.00166 * 354.77590 * 9 7 6 11 11 C 1.40051 * 119.99838 * 174.78437 * 9 7 6 12 12 N 1.30675 * 119.99868 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00151 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47260 * 59.99624 * 13 11 9 15 15 H 1.48499 * 109.47393 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46818 * 299.99679 * 13 11 9 17 17 C 1.46928 * 118.73846 * 53.61036 * 6 5 4 18 18 C 1.53036 * 109.46288 * 240.03357 * 2 1 3 19 19 N 1.46899 * 109.49695 * 58.66290 * 18 2 1 20 20 C 1.46891 * 111.00123 * 39.88024 * 19 18 2 21 21 C 1.38332 * 110.99820 * 275.92278 * 19 18 2 22 22 N 1.32983 * 120.83891 * 0.26203 * 21 19 18 23 23 C 1.32079 * 121.03420 * 180.24724 * 22 21 19 24 24 N 1.31552 * 122.71312 * 359.45498 * 23 22 21 25 25 C 1.33198 * 120.71132 * 0.27730 * 24 23 22 26 26 N 1.36775 * 134.29842 * 179.97438 * 25 24 23 27 27 H 0.97003 * 124.99138 * 0.02562 * 26 25 24 28 28 C 1.37101 * 110.02404 * 180.02562 * 26 25 24 29 29 C 1.34299 * 109.80991 * 359.97438 * 28 26 25 30 30 C 1.40301 * 120.83669 * 179.97438 * 21 19 18 31 31 H 1.09006 * 109.47230 * 184.36802 * 1 2 3 32 32 H 1.09000 * 109.47376 * 304.37138 * 1 2 3 33 33 H 1.09008 * 109.47261 * 64.37156 * 1 2 3 34 34 H 1.09002 * 109.46557 * 61.39922 * 4 2 1 35 35 H 1.08997 * 109.52271 * 301.34048 * 4 2 1 36 36 H 1.08998 * 109.58721 * 185.59722 * 5 4 2 37 37 H 1.08998 * 109.58990 * 65.16483 * 5 4 2 38 38 H 0.97001 * 120.00199 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.58682 * 186.60577 * 17 6 5 40 40 H 1.08993 * 109.70322 * 66.24766 * 17 6 5 41 41 H 1.09001 * 109.49827 * 298.59685 * 18 2 1 42 42 H 1.09000 * 109.47420 * 290.67188 * 20 19 18 43 43 H 1.08999 * 109.47392 * 50.67521 * 20 19 18 44 44 H 1.09006 * 109.47089 * 170.67177 * 20 19 18 45 45 H 1.08002 * 118.64551 * 179.73224 * 23 22 21 46 46 H 1.07997 * 125.09722 * 180.02562 * 28 26 25 47 47 H 1.07999 * 126.59866 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7202 1.2502 5 6 3.5719 -0.6887 1.2640 6 7 4.0679 -1.2494 -0.0003 7 6 4.9617 -2.2582 -0.0004 8 8 5.4350 -2.6518 -1.0500 9 6 5.3629 -2.8805 1.2624 10 1 5.0087 -2.4774 2.1995 11 6 6.2064 -3.9985 1.2552 12 7 6.6348 -4.4864 0.1211 13 14 6.7179 -4.7930 2.8664 14 1 5.5102 -5.2595 3.5937 15 1 7.6053 -5.9506 2.5878 16 1 7.4446 -3.8008 3.6988 17 6 3.5714 -0.6892 -1.2646 18 6 2.0398 -0.7207 -1.2500 19 7 1.5242 -0.0468 -2.4491 20 6 1.5447 1.4125 -2.2828 21 6 0.2520 -0.4926 -2.7598 22 7 -0.3507 -1.4107 -2.0100 23 6 -1.5633 -1.8426 -2.3059 24 7 -2.2462 -1.3934 -3.3367 25 6 -1.7293 -0.4688 -4.1443 26 7 -2.1752 0.1791 -5.2633 27 1 -3.0403 0.0395 -5.6794 28 6 -1.2199 1.0549 -5.7106 29 6 -0.1438 1.0031 -4.9088 30 6 -0.4373 0.0170 -3.8705 31 1 -0.3634 -1.0247 0.0783 32 1 -0.3634 0.5802 0.8482 33 1 -0.3634 0.4445 -0.9266 34 1 1.6979 -1.7549 1.2387 35 1 1.6583 -0.2203 2.1401 36 1 3.9422 -1.2846 2.0981 37 1 3.9154 0.3407 1.3666 38 1 7.2187 -5.2610 0.1160 39 1 3.9412 -1.2856 -2.0987 40 1 3.9147 0.3398 -1.3705 41 1 1.6973 -1.7555 -1.2385 42 1 0.7994 1.7044 -1.5429 43 1 2.5329 1.7260 -1.9463 44 1 1.3170 1.8901 -3.2358 45 1 -2.0146 -2.5924 -1.6730 46 1 -1.3184 1.6916 -6.5774 47 1 0.7642 1.5788 -5.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560407587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = 93.556766 kcal Electronic energy + Delta-G solvation = -31165.644535 eV Core-core repulsion = 27157.770389 eV Total energy + Delta-G solvation = -4007.874146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13587 -40.13013 -38.43570 -37.19555 -35.25080 -32.74691 -32.67541 -32.25199 -31.23848 -29.81837 -29.06104 -27.86687 -26.67949 -25.74444 -23.53155 -23.31805 -22.56284 -21.75393 -20.89362 -19.91920 -19.02861 -18.55961 -17.48333 -16.60138 -16.25791 -15.93772 -15.60801 -15.28635 -14.80440 -14.68616 -14.58226 -14.21947 -14.00313 -13.83883 -13.60886 -13.36447 -13.15401 -12.98549 -12.69749 -12.35238 -12.19652 -11.98790 -11.75214 -11.63937 -11.38366 -11.12169 -11.08176 -10.95529 -10.90356 -10.67525 -10.54615 -10.25337 -10.19858 -9.99661 -9.78477 -9.16193 -9.03844 -8.92281 -8.81434 -7.86976 -7.54491 -7.17675 -6.16220 -4.60963 0.81297 1.35278 2.44143 2.53392 3.17703 3.22638 3.24070 3.42843 3.89767 4.11669 4.22258 4.39800 4.56145 4.59335 4.65644 4.84910 4.90325 5.04925 5.14399 5.20328 5.27562 5.34754 5.39596 5.49913 5.69381 5.72142 5.76535 5.82593 5.85415 5.90539 5.98066 6.08480 6.09822 6.16561 6.28562 6.31869 6.45527 6.53770 6.58339 6.60975 6.68431 6.75733 6.88604 6.95448 7.17529 7.37991 7.49109 7.67090 8.17239 8.28337 8.38809 9.05446 9.47476 10.61503 10.80087 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.002902 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.317250 B = 9647.807294 C = 9740.352199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.065 0.935 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.639 5.639 7 C 0.561 3.439 8 O -0.576 6.576 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.134 3.866 18 C 0.077 3.923 19 N -0.464 5.464 20 C 0.022 3.978 21 C 0.422 3.578 22 N -0.562 5.562 23 C 0.338 3.662 24 N -0.560 5.560 25 C 0.329 3.671 26 N -0.574 5.574 27 H 0.420 0.580 28 C 0.038 3.962 29 C -0.159 4.159 30 C -0.227 4.227 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.269 0.731 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.197 0.803 46 H 0.179 0.821 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 13.298 -5.935 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.083 0.917 4 C -0.162 4.162 5 C -0.005 4.005 6 N -0.377 5.377 7 C 0.367 3.633 8 O -0.458 6.458 9 C -0.580 4.580 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.397 5.397 13 Si 0.730 3.270 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.193 1.193 17 C 0.009 3.991 18 C -0.030 4.030 19 N -0.178 5.178 20 C -0.124 4.124 21 C 0.177 3.823 22 N -0.285 5.285 23 C 0.047 3.953 24 N -0.284 5.284 25 C 0.089 3.911 26 N -0.182 5.182 27 H 0.257 0.743 28 C -0.087 4.087 29 C -0.186 4.186 30 C -0.239 4.239 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.213 0.787 46 H 0.196 0.804 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.145 12.189 -6.562 22.036 hybrid contribution -0.354 0.296 0.570 0.734 sum -17.499 12.486 -5.991 22.316 Atomic orbital electron populations 1.22203 0.95361 1.02809 0.99250 1.21603 0.95562 0.99309 0.96091 0.91676 1.21944 0.97136 1.01036 0.96043 1.21460 0.91951 0.97694 0.89373 1.48146 1.47251 1.39164 1.03133 1.18235 0.77271 0.77157 0.90648 1.90597 1.56996 1.63983 1.34250 1.20931 1.31310 1.13842 0.91939 0.90932 1.25722 0.94350 0.96247 0.96872 1.70008 1.24786 1.18670 1.26204 0.86468 0.79017 0.78904 0.82581 1.19255 1.20606 1.19272 1.20997 0.89833 0.97846 0.90410 1.22348 0.96385 0.99787 0.84528 1.58701 1.15098 1.07345 1.36654 1.22707 1.03259 0.84006 1.02400 1.19527 0.86854 0.88641 0.87269 1.68883 1.12235 1.17357 1.30010 1.24460 0.86641 0.94383 0.89836 1.67371 1.39080 1.14472 1.07446 1.18258 0.90462 0.92964 0.89435 1.41473 1.17957 1.35469 1.23297 0.74278 1.21893 0.89006 0.96619 1.01137 1.21634 0.99576 1.01683 0.95678 1.19950 0.97154 1.05993 1.00853 0.90394 0.94272 0.94203 0.91255 0.91970 0.88737 0.94246 0.92066 0.89350 0.94190 0.87422 0.93304 0.89591 0.90320 0.78708 0.80366 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.10 37.15 0.26 -1.58 16 2 C -0.11 -1.53 1.64 -90.58 -0.15 -1.68 16 3 H 0.06 0.88 6.53 -51.93 -0.34 0.54 16 4 C -0.12 -1.89 5.36 -26.61 -0.14 -2.03 16 5 C 0.12 2.20 6.35 -3.71 -0.02 2.17 16 6 N -0.64 -14.49 2.97 -174.43 -0.52 -15.01 16 7 C 0.56 16.00 7.62 -12.98 -0.10 15.90 16 8 O -0.58 -18.81 14.47 5.20 0.08 -18.73 16 9 C -0.54 -15.16 8.88 -35.63 -0.32 -15.47 16 10 H 0.07 1.83 5.64 -52.49 -0.30 1.53 16 11 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 12 N -0.77 -23.11 11.84 55.55 0.66 -22.45 16 13 Si 0.91 20.07 29.56 -169.99 -5.02 15.04 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C 0.13 2.69 5.91 -3.71 -0.02 2.67 16 18 C 0.08 1.30 1.89 -67.59 -0.13 1.17 16 19 N -0.46 -6.84 4.66 -172.98 -0.81 -7.64 16 20 C 0.02 0.25 7.81 60.06 0.47 0.72 16 21 C 0.42 6.24 4.59 -154.73 -0.71 5.53 16 22 N -0.56 -8.36 4.96 -13.67 -0.07 -8.43 16 23 C 0.34 4.47 12.23 -92.12 -1.13 3.34 16 24 N -0.56 -7.58 10.47 -13.89 -0.15 -7.73 16 25 C 0.33 4.20 8.48 -155.86 -1.32 2.88 16 26 N -0.57 -5.08 6.03 -12.14 -0.07 -5.16 16 27 H 0.42 2.52 8.96 -40.82 -0.37 2.15 16 28 C 0.04 0.28 11.83 -16.59 -0.20 0.09 16 29 C -0.16 -1.59 9.88 -37.79 -0.37 -1.96 16 30 C -0.23 -3.01 5.91 -105.00 -0.62 -3.63 16 31 H 0.08 1.10 6.80 -51.93 -0.35 0.75 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.54 4.04 -51.92 -0.21 0.33 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.83 5.30 -51.93 -0.28 1.55 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 39 H 0.09 2.08 7.04 -51.93 -0.37 1.71 16 40 H 0.04 0.73 6.94 -51.93 -0.36 0.37 16 41 H 0.11 2.14 6.90 -51.93 -0.36 1.78 16 42 H 0.05 0.55 5.31 -51.93 -0.28 0.28 16 43 H 0.09 0.96 6.64 -51.93 -0.35 0.61 16 44 H 0.08 0.76 5.42 -51.93 -0.28 0.48 16 45 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 46 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.15 1.28 6.86 -52.49 -0.36 0.92 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -36.57 356.60 -10.97 -47.54 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.86 Total: 6.73 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -4.59 Total: 10.47 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.95 Total: -66.42 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.08 Total: -18.73 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.57 -10.97 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560407587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.102 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds